Wall clock time and date at job start Sun Mar 29 2020 22:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 N 1.46896 * 109.47501 * 299.99787 * 3 2 1 5 5 C 1.47479 * 111.00216 * 265.97381 * 4 3 2 6 6 C 1.53510 * 87.93014 * 221.29496 * 5 4 3 7 7 C 1.50703 * 114.17052 * 139.67366 * 6 5 4 8 8 H 1.08001 * 119.99503 * 266.15846 * 7 6 5 9 9 C 1.37869 * 120.00183 * 86.15444 * 7 6 5 10 10 N 1.31519 * 120.00248 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00067 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47192 * 60.00020 * 11 9 7 13 13 H 1.48500 * 109.47370 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47288 * 300.00087 * 11 9 7 15 15 C 1.47480 * 111.00138 * 169.99671 * 4 3 2 16 16 C 1.52999 * 109.46991 * 119.99661 * 2 1 3 17 17 C 1.53006 * 109.46626 * 60.00378 * 16 2 1 18 18 C 1.52997 * 109.47164 * 59.99702 * 17 16 2 19 19 C 1.53002 * 109.47415 * 300.00027 * 18 17 16 20 20 C 1.52996 * 109.46972 * 59.99860 * 19 18 17 21 21 H 1.09000 * 109.47611 * 300.00272 * 1 2 3 22 22 H 1.09001 * 109.47289 * 59.99701 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47107 * 59.99949 * 3 2 1 25 25 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 26 26 H 1.08996 * 113.47243 * 336.06158 * 5 4 3 27 27 H 1.08997 * 113.47567 * 106.52469 * 5 4 3 28 28 H 1.09006 * 114.17140 * 272.37010 * 6 5 4 29 29 H 0.96996 * 119.99905 * 180.02562 * 10 9 7 30 30 H 1.08998 * 113.47727 * 253.47164 * 15 4 3 31 31 H 1.08992 * 113.47427 * 23.88243 * 15 4 3 32 32 H 1.08993 * 109.47839 * 300.00447 * 16 2 1 33 33 H 1.09000 * 109.47160 * 180.02562 * 16 2 1 34 34 H 1.09001 * 109.46998 * 179.97438 * 17 16 2 35 35 H 1.09000 * 109.47050 * 299.99699 * 17 16 2 36 36 H 1.09000 * 109.47140 * 60.00051 * 18 17 16 37 37 H 1.09001 * 109.47230 * 179.97438 * 18 17 16 38 38 H 1.08992 * 109.46974 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.46550 * 300.00288 * 19 18 17 40 40 H 1.09000 * 109.47054 * 60.00300 * 20 19 18 41 41 H 1.09001 * 109.46997 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5504 2.1351 -1.1994 5 6 2.5412 2.0684 -2.2897 6 6 2.2132 3.5351 -2.6025 7 6 3.4150 4.3759 -2.9485 8 1 3.9166 4.9435 -2.1787 9 6 3.8743 4.4205 -4.2477 10 7 3.2632 3.7296 -5.1853 11 14 5.3644 5.4622 -4.6764 12 1 6.5378 4.9920 -3.8971 13 1 5.6533 5.3393 -6.1278 14 1 5.0871 6.8829 -4.3450 15 6 1.8181 3.5832 -1.1199 16 6 2.0399 -0.7212 1.2493 17 6 1.5299 -2.1637 1.2492 18 6 2.0399 -2.8849 0.0000 19 6 1.5300 -2.1636 -1.2493 20 6 2.0400 -0.7212 -1.2492 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4426 0.0005 26 1 3.5623 1.9169 -1.9398 27 1 2.2623 1.3811 -3.0884 28 1 1.3790 3.6688 -3.2914 29 1 3.5865 3.7607 -6.0992 30 1 0.9264 4.1797 -0.9273 31 1 2.6455 3.8360 -0.4571 32 1 1.6766 -0.2075 2.1392 33 1 3.1299 -0.7208 1.2495 34 1 1.8936 -2.6777 2.1390 35 1 0.4399 -2.1637 1.2492 36 1 3.1299 -2.8849 0.0000 37 1 1.6770 -3.9127 0.0001 38 1 1.8930 -2.6777 -2.1392 39 1 0.4400 -2.1636 -1.2493 40 1 3.1300 -0.7212 -1.2492 41 1 1.6763 -0.2072 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208894743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:52 Heat of formation + Delta-G solvation = 4.679077 kcal Electronic energy + Delta-G solvation = -17807.297777 eV Core-core repulsion = 15300.849902 eV Total energy + Delta-G solvation = -2506.447874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80741 -38.04538 -33.19167 -32.18779 -30.61953 -28.50842 -26.65656 -25.42985 -24.69524 -22.73611 -22.17558 -20.44233 -18.59162 -18.01400 -16.55017 -15.54711 -14.82679 -14.60778 -14.41348 -14.14825 -13.87245 -13.75158 -12.88030 -12.68826 -12.47593 -11.92127 -11.83612 -11.58300 -11.39339 -11.29542 -11.06586 -10.93227 -10.79852 -10.77521 -10.61131 -10.25941 -10.11528 -9.88811 -9.69729 -9.42959 -9.08033 -8.86829 -8.39675 -7.88346 -6.03149 -4.07253 3.30992 3.36104 3.38303 4.41590 4.75005 4.84942 4.92751 5.11054 5.25321 5.31863 5.46127 5.54335 5.59596 5.63003 5.72124 5.77721 5.83368 5.98090 6.05628 6.12954 6.13639 6.17598 6.21255 6.31638 6.35568 6.38194 6.50346 6.54214 6.56019 6.60949 6.68961 6.75591 6.82190 6.94036 7.21669 7.28888 7.75420 7.95062 8.17138 8.41106 8.95426 9.57327 11.06434 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039521 B = 0.005629 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.309139 B = 4973.218685 C = 5202.505115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 C 0.031 3.969 4 N -0.479 5.479 5 C 0.009 3.991 6 C 0.039 3.961 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.006 4.006 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.109 4.109 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -10.436 10.245 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 C -0.099 4.099 4 N -0.201 5.201 5 C -0.120 4.120 6 C 0.021 3.979 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.135 4.135 10 N -0.524 5.524 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.135 4.135 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.147 4.147 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.791 -10.754 9.980 15.153 hybrid contribution 1.817 0.724 0.016 1.956 sum -1.974 -10.029 9.995 14.297 Atomic orbital electron populations 1.21805 0.94492 1.00398 1.02176 1.20395 0.96081 0.93934 0.94364 1.22658 0.97452 0.94442 0.95301 1.68782 1.41280 1.05350 1.04670 1.24083 0.92585 1.02074 0.93224 1.20107 0.96854 0.91212 0.89775 1.21007 1.12440 1.28152 0.93823 0.92617 1.25001 0.96854 0.95288 0.96401 1.69958 1.40157 1.40800 1.01505 0.86699 0.83259 0.80986 0.77288 1.20303 1.21241 1.20170 1.23966 0.98482 0.89526 1.01513 1.21585 1.00263 0.95243 0.97647 1.21540 1.00916 0.95733 0.97326 1.21527 1.00542 0.98302 0.95176 1.21583 1.00859 0.96290 0.97057 1.21644 0.99902 0.94465 0.98654 0.93877 0.91251 0.93339 0.92408 0.94554 0.93174 0.91896 0.91926 0.92857 0.92263 0.93129 0.92466 0.92430 0.92745 0.91792 0.92380 0.92727 0.92558 0.91879 0.92804 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.62 37.16 0.28 -1.57 16 2 C -0.05 -0.69 0.59 -154.51 -0.09 -0.78 16 3 C 0.03 0.52 3.89 -3.82 -0.01 0.51 16 4 N -0.48 -9.55 5.27 -244.62 -1.29 -10.84 16 5 C 0.01 0.21 5.72 -7.54 -0.04 0.17 16 6 C 0.04 1.00 3.77 -91.24 -0.34 0.65 16 7 C -0.52 -14.13 8.82 -34.44 -0.30 -14.44 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 10 N -0.89 -25.66 13.26 55.43 0.74 -24.93 16 11 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 C -0.01 -0.13 7.25 -7.54 -0.05 -0.18 16 16 C -0.11 -1.36 4.73 -26.73 -0.13 -1.48 16 17 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 18 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 19 C -0.12 -1.52 5.65 -26.73 -0.15 -1.67 16 20 C -0.11 -1.65 3.94 -26.73 -0.11 -1.76 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.11 7.60 -51.93 -0.39 0.72 16 23 H 0.05 0.61 4.81 -51.93 -0.25 0.36 16 24 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 25 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 26 H 0.05 1.17 7.37 -51.93 -0.38 0.79 16 27 H 0.06 1.49 7.06 -51.93 -0.37 1.12 16 28 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.37 5.82 -51.93 -0.30 1.07 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -27.38 304.68 -9.68 -37.06 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.34 Total: -0.33 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.36 Total: -21.69 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.55 Total: -35.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.38 -9.68 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208894743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.742 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds