Wall clock time and date at job start Sun Mar 29 2020 21:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47189 * 2 1 4 4 C 1.46902 * 111.00082 * 291.09177 * 3 2 1 5 5 C 1.50702 * 109.47306 * 160.31139 * 4 3 2 6 6 H 1.07997 * 119.99854 * 4.66480 * 5 4 3 7 7 C 1.37876 * 119.99984 * 184.66372 * 5 4 3 8 8 N 1.31519 * 120.00268 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47451 * 60.00157 * 9 7 5 11 11 H 1.48503 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47026 * 300.00183 * 9 7 5 13 13 C 1.46902 * 111.00080 * 167.13691 * 3 2 1 14 14 C 1.50690 * 109.47158 * 293.95504 * 13 3 2 15 15 C 1.34677 * 126.59258 * 270.02282 * 14 13 3 16 16 C 1.50698 * 125.98818 * 359.73887 * 15 14 13 17 17 N 1.34128 * 108.02083 * 179.73323 * 15 14 13 18 18 C 1.30496 * 109.25739 * 0.02562 * 17 15 14 19 19 N 1.35042 * 108.69896 * 359.97438 * 18 17 15 20 20 C 1.46507 * 126.39467 * 180.02562 * 19 18 17 21 21 H 1.09003 * 109.46756 * 59.22241 * 1 2 3 22 22 H 1.08999 * 109.47187 * 179.21779 * 1 2 3 23 23 H 1.08991 * 109.47113 * 299.22234 * 1 2 3 24 24 H 1.09003 * 109.46871 * 239.99993 * 2 1 3 25 25 H 1.08998 * 109.47255 * 120.00098 * 2 1 3 26 26 H 1.09001 * 109.47317 * 280.31276 * 4 3 2 27 27 H 1.09004 * 109.47296 * 40.31108 * 4 3 2 28 28 H 0.96993 * 120.00052 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47005 * 173.95321 * 13 3 2 30 30 H 1.09003 * 109.47166 * 53.95538 * 13 3 2 31 31 H 1.08999 * 109.47282 * 89.99546 * 16 15 14 32 32 H 1.08994 * 109.47043 * 209.99998 * 16 15 14 33 33 H 1.09008 * 109.46934 * 330.00017 * 16 15 14 34 34 H 1.08001 * 125.64596 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.46879 * 269.95354 * 20 19 18 36 36 H 1.09003 * 109.46751 * 29.95555 * 20 19 18 37 37 H 1.08998 * 109.46923 * 149.95501 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7299 2.0458 -1.2796 5 6 1.7887 3.5407 -1.0976 6 1 2.0917 3.9576 -0.1486 7 6 1.4555 4.3760 -2.1427 8 7 1.0860 3.8683 -3.2983 9 14 1.5277 6.2289 -1.9169 10 1 2.9129 6.6310 -1.5638 11 1 1.1244 6.8976 -3.1800 12 1 0.6026 6.6311 -0.8271 13 6 3.4557 1.4356 0.3053 14 6 3.6847 0.9744 1.7215 15 6 3.6962 1.7461 2.8252 16 6 3.4861 3.2378 2.8650 17 7 3.9273 0.9541 3.8828 18 6 4.0600 -0.2788 3.4764 19 7 3.9155 -0.3102 2.1341 20 6 3.9913 -1.4975 1.2791 21 1 -0.3633 0.5259 -0.8830 22 1 -0.3633 -1.0276 -0.0140 23 1 -0.3633 0.5017 0.8968 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.4679 1.7408 -2.0214 27 1 0.7342 1.7600 -1.6188 28 1 0.8513 4.4560 -4.0334 29 1 3.8150 2.4586 0.1938 30 1 3.9963 0.7838 -0.3810 31 1 2.4243 3.4521 2.9867 32 1 4.0404 3.6605 3.7028 33 1 3.8416 3.6797 1.9341 34 1 4.2534 -1.1326 4.1089 35 1 5.0210 -1.6460 0.9542 36 1 3.6575 -2.3707 1.8396 37 1 3.3516 -1.3589 0.4075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235540329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:44 Heat of formation + Delta-G solvation = 63.827476 kcal Electronic energy + Delta-G solvation = -17482.995687 eV Core-core repulsion = 14875.572337 eV Total energy + Delta-G solvation = -2607.423350 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.84045 -37.01319 -34.10947 -32.64607 -31.61785 -29.93822 -28.27921 -26.94305 -25.53258 -24.19181 -22.68902 -20.48526 -20.22791 -18.85900 -16.59890 -16.48451 -15.75566 -14.85791 -14.59857 -14.42441 -13.89666 -13.48901 -13.24541 -13.14168 -12.67619 -12.27001 -12.13077 -11.97709 -11.77957 -11.60869 -11.26123 -11.19119 -10.93189 -10.80954 -10.60213 -10.30393 -9.77297 -9.53595 -9.30482 -9.15395 -8.41722 -7.80375 -7.29548 -6.02536 -4.03586 2.34480 3.03449 3.35064 3.38996 3.42440 3.47120 4.43396 4.75835 4.86503 4.92482 5.10670 5.15235 5.33569 5.35414 5.50228 5.59352 5.68847 5.81341 5.96381 6.00946 6.19024 6.24626 6.37924 6.45910 6.49839 6.58429 6.72395 6.78041 7.15957 7.20807 7.27953 7.50481 7.81522 8.07876 8.15410 8.42982 8.51136 9.03959 9.60704 11.08070 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.007708 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.771002 B = 3631.767777 C = 4324.106406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.138 3.862 14 C -0.001 4.001 15 C 0.013 3.987 16 C -0.062 4.062 17 N -0.495 5.495 18 C 0.166 3.834 19 N -0.462 5.462 20 C 0.063 3.937 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.018 0.982 25 H 0.058 0.942 26 H -0.012 1.012 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -9.984 7.657 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.251 5.251 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.120 4.120 17 N -0.214 5.214 18 C -0.116 4.116 19 N -0.147 5.147 20 C -0.079 4.079 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.006 0.994 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.215 0.785 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.593 -9.531 8.543 13.598 hybrid contribution 0.362 -0.030 -1.460 1.505 sum 4.955 -9.561 7.082 12.889 Atomic orbital electron populations 1.21750 0.95265 0.99929 1.03171 1.22199 0.96441 0.91315 0.98322 1.62178 1.12402 1.13366 1.37193 1.19825 0.96488 0.94182 0.82891 1.21136 1.44747 0.90418 0.97982 0.91692 1.24976 0.95416 0.98989 0.95166 1.69942 1.46212 1.35257 1.02666 0.86584 0.78584 0.85143 0.77280 1.20194 1.21469 1.20097 1.20388 0.90401 1.01633 0.86734 1.21230 1.08928 0.83157 0.98174 1.20431 1.06666 0.96705 0.87796 1.19994 1.02160 0.87800 1.02008 1.70117 1.19504 1.00651 1.31149 1.24678 1.07664 0.97518 0.81693 1.45244 1.53801 1.07449 1.08163 1.22182 1.03485 0.86187 0.96094 0.91717 0.93761 0.92318 0.96375 0.92340 0.99434 0.94227 0.92907 0.87708 0.95901 0.91174 0.92289 0.91000 0.78517 0.90923 0.89717 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.95 37.16 0.37 -2.11 16 2 C 0.05 0.81 4.26 -3.83 -0.02 0.80 16 3 N -0.53 -11.07 4.39 -237.52 -1.04 -12.11 16 4 C 0.19 4.78 4.60 -4.97 -0.02 4.76 16 5 C -0.50 -13.73 8.61 -34.44 -0.30 -14.03 16 6 H 0.06 1.75 7.66 -52.49 -0.40 1.34 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.14 2.63 4.74 -4.98 -0.02 2.60 16 14 C 0.00 -0.02 5.61 -81.61 -0.46 -0.47 16 15 C 0.01 0.24 7.09 -82.85 -0.59 -0.35 16 16 C -0.06 -1.06 10.22 36.00 0.37 -0.69 16 17 N -0.49 -8.77 11.25 -10.87 -0.12 -8.90 16 18 C 0.17 2.38 12.56 -90.38 -1.14 1.24 16 19 N -0.46 -6.67 2.75 -121.36 -0.33 -7.01 16 20 C 0.06 0.65 10.00 59.85 0.60 1.25 16 21 H 0.06 1.24 6.35 -51.93 -0.33 0.91 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.02 0.32 7.82 -51.93 -0.41 -0.09 16 25 H 0.06 0.95 4.60 -51.93 -0.24 0.71 16 26 H -0.01 -0.32 8.00 -51.93 -0.42 -0.74 16 27 H 0.04 1.06 6.04 -51.93 -0.31 0.75 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.10 2.15 6.36 -51.93 -0.33 1.82 16 30 H 0.02 0.42 7.86 -51.93 -0.41 0.01 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.23 7.17 -51.92 -0.37 0.85 16 34 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.04 4.97 -51.93 -0.26 0.78 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -31.39 297.70 -8.17 -39.56 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.57 Total: -1.29 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.30 Total: -5.56 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.76 Total: -53.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.39 -8.17 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235540329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.383 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds