Wall clock time and date at job start Sun Mar 29 2020 21:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47189 * 2 1 4 4 C 1.46902 * 111.00082 * 291.09177 * 3 2 1 5 5 C 1.50702 * 109.47306 * 160.31139 * 4 3 2 6 6 H 1.07997 * 119.99854 * 4.66480 * 5 4 3 7 7 C 1.37876 * 119.99984 * 184.66372 * 5 4 3 8 8 N 1.31519 * 120.00268 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47451 * 60.00157 * 9 7 5 11 11 H 1.48503 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47026 * 300.00183 * 9 7 5 13 13 C 1.46902 * 111.00080 * 167.13691 * 3 2 1 14 14 C 1.50690 * 109.47158 * 293.95504 * 13 3 2 15 15 C 1.34677 * 126.59258 * 270.02282 * 14 13 3 16 16 C 1.50698 * 125.98818 * 359.73887 * 15 14 13 17 17 N 1.34128 * 108.02083 * 179.73323 * 15 14 13 18 18 C 1.30496 * 109.25739 * 0.02562 * 17 15 14 19 19 N 1.35042 * 108.69896 * 359.97438 * 18 17 15 20 20 C 1.46507 * 126.39467 * 180.02562 * 19 18 17 21 21 H 1.09003 * 109.46756 * 59.22241 * 1 2 3 22 22 H 1.08999 * 109.47187 * 179.21779 * 1 2 3 23 23 H 1.08991 * 109.47113 * 299.22234 * 1 2 3 24 24 H 1.09003 * 109.46871 * 239.99993 * 2 1 3 25 25 H 1.08998 * 109.47255 * 120.00098 * 2 1 3 26 26 H 1.09001 * 109.47317 * 280.31276 * 4 3 2 27 27 H 1.09004 * 109.47296 * 40.31108 * 4 3 2 28 28 H 0.96993 * 120.00052 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47005 * 173.95321 * 13 3 2 30 30 H 1.09003 * 109.47166 * 53.95538 * 13 3 2 31 31 H 1.08999 * 109.47282 * 89.99546 * 16 15 14 32 32 H 1.08994 * 109.47043 * 209.99998 * 16 15 14 33 33 H 1.09008 * 109.46934 * 330.00017 * 16 15 14 34 34 H 1.08001 * 125.64596 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.46879 * 269.95354 * 20 19 18 36 36 H 1.09003 * 109.46751 * 29.95555 * 20 19 18 37 37 H 1.08998 * 109.46923 * 149.95501 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7299 2.0458 -1.2796 5 6 1.7887 3.5407 -1.0976 6 1 2.0917 3.9576 -0.1486 7 6 1.4555 4.3760 -2.1427 8 7 1.0860 3.8683 -3.2983 9 14 1.5277 6.2289 -1.9169 10 1 2.9129 6.6310 -1.5638 11 1 1.1244 6.8976 -3.1800 12 1 0.6026 6.6311 -0.8271 13 6 3.4557 1.4356 0.3053 14 6 3.6847 0.9744 1.7215 15 6 3.6962 1.7461 2.8252 16 6 3.4861 3.2378 2.8650 17 7 3.9273 0.9541 3.8828 18 6 4.0600 -0.2788 3.4764 19 7 3.9155 -0.3102 2.1341 20 6 3.9913 -1.4975 1.2791 21 1 -0.3633 0.5259 -0.8830 22 1 -0.3633 -1.0276 -0.0140 23 1 -0.3633 0.5017 0.8968 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.4679 1.7408 -2.0214 27 1 0.7342 1.7600 -1.6188 28 1 0.8513 4.4560 -4.0334 29 1 3.8150 2.4586 0.1938 30 1 3.9963 0.7838 -0.3810 31 1 2.4243 3.4521 2.9867 32 1 4.0404 3.6605 3.7028 33 1 3.8416 3.6797 1.9341 34 1 4.2534 -1.1326 4.1089 35 1 5.0210 -1.6460 0.9542 36 1 3.6575 -2.3707 1.8396 37 1 3.3516 -1.3589 0.4075 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235540329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:44 Heat of formation + Delta-G solvation = 44.442774 kcal Electronic energy + Delta-G solvation = -17483.836271 eV Core-core repulsion = 14875.572337 eV Total energy + Delta-G solvation = -2608.263934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.05430 -38.64928 -35.27551 -34.69804 -32.98986 -31.45776 -29.79041 -28.40895 -26.89932 -25.65164 -24.47355 -21.94193 -21.54188 -20.20851 -18.58122 -17.68069 -17.14280 -16.60927 -16.03786 -15.83011 -15.49383 -15.01123 -14.59038 -14.31078 -14.13137 -13.79509 -13.51868 -13.37715 -13.07263 -13.01181 -12.92437 -12.86323 -12.62710 -12.44957 -12.29403 -12.10674 -11.52044 -11.30361 -10.84204 -10.54891 -10.34731 -9.15442 -8.95876 -8.16223 -6.24747 1.10996 1.43671 1.46087 1.53607 1.97275 2.20588 2.43551 3.15611 3.37830 3.74734 3.88537 3.98363 4.07357 4.12804 4.33386 4.39203 4.48289 4.53098 4.61814 4.66731 4.75089 4.85869 4.93912 5.01481 5.12623 5.17142 5.25480 5.27846 5.32631 5.49050 5.71341 5.86366 6.11040 6.34442 6.43979 6.62300 6.90167 7.20422 7.44291 8.93987 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.007708 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.771002 B = 3631.767777 C = 4324.106406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.208 3.792 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.147 3.853 14 C -0.019 4.019 15 C -0.008 4.008 16 C -0.059 4.059 17 N -0.531 5.531 18 C 0.188 3.812 19 N -0.460 5.460 20 C 0.056 3.944 21 H 0.037 0.963 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.024 0.976 25 H 0.080 0.920 26 H -0.037 1.037 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.246 0.754 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -11.427 9.050 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 N -0.262 5.262 4 C 0.082 3.918 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.018 3.982 14 C -0.134 4.134 15 C -0.137 4.137 16 C -0.117 4.117 17 N -0.251 5.251 18 C -0.094 4.094 19 N -0.143 5.143 20 C -0.085 4.085 21 H 0.056 0.944 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.099 0.901 26 H -0.019 1.019 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.262 0.738 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.218 -10.999 9.937 15.715 hybrid contribution 0.201 0.288 -1.842 1.876 sum 5.420 -10.711 8.095 14.479 Atomic orbital electron populations 1.21719 0.94914 1.01707 1.01309 1.22295 0.96704 0.89573 0.99552 1.62083 1.14030 1.15493 1.34546 1.19443 0.94431 0.93721 0.84217 1.21449 1.44370 0.91802 0.97892 0.91921 1.25807 0.95011 1.03665 0.94817 1.70060 1.47195 1.36880 1.03457 0.85563 0.79008 0.79550 0.77313 1.19159 1.21034 1.19582 1.20139 0.89104 1.00633 0.88296 1.20842 1.10767 0.84940 0.96819 1.20629 1.07260 0.97181 0.88585 1.19935 1.01516 0.88132 1.02081 1.70108 1.21477 1.02138 1.31365 1.25609 1.04225 0.97754 0.81855 1.45428 1.52828 1.07295 1.08754 1.22494 1.04623 0.85643 0.95716 0.94436 0.90147 0.93222 0.95780 0.90137 1.01938 0.96434 0.92817 0.90057 0.95263 0.92284 0.91043 0.91813 0.73788 0.89152 0.85932 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.95 71.98 0.72 -3.98 16 2 C 0.05 1.61 4.26 86.30 0.37 1.98 16 3 N -0.54 -22.88 4.39 -905.37 -3.98 -26.86 16 4 C 0.21 10.79 4.60 85.56 0.39 11.18 16 5 C -0.52 -28.91 8.61 25.60 0.22 -28.69 16 6 H 0.06 3.46 7.66 -2.91 -0.02 3.44 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.94 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 C 0.15 5.68 4.74 85.55 0.41 6.08 16 14 C -0.02 -0.65 5.61 40.95 0.23 -0.42 16 15 C -0.01 -0.29 7.09 41.39 0.29 0.01 16 16 C -0.06 -2.04 10.22 71.24 0.73 -1.32 16 17 N -0.53 -17.81 11.25 -188.32 -2.12 -19.93 16 18 C 0.19 4.69 12.56 180.26 2.26 6.96 16 19 N -0.46 -11.91 2.75 -537.88 -1.48 -13.39 16 20 C 0.06 0.94 10.00 127.77 1.28 2.22 16 21 H 0.04 1.46 6.35 -2.39 -0.02 1.44 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.02 0.81 7.82 -2.39 -0.02 0.79 16 25 H 0.08 2.44 4.60 -2.39 -0.01 2.43 16 26 H -0.04 -2.06 8.00 -2.39 -0.02 -2.08 16 27 H 0.02 0.99 6.04 -2.39 -0.01 0.97 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.08 3.47 6.36 -2.39 -0.02 3.46 16 30 H 0.03 1.07 7.86 -2.39 -0.02 1.05 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.25 7.17 -2.38 -0.02 2.24 16 34 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.56 4.97 -2.39 -0.01 1.55 16 Total: -1.00 -69.19 297.70 3.14 -66.05 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.05 Total: 8.48 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 7.36 Total: -5.23 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -7.29 Total: -115.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.19 3.14 -66.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235540329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.492 kcal (2) G-P(sol) polarization free energy of solvation -69.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds