Wall clock time and date at job start Sun Mar 29 2020 21:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46912 * 1 3 3 C 1.46950 * 110.99965 * 2 1 4 4 C 1.53049 * 109.36093 * 183.18595 * 3 2 1 5 5 N 1.46951 * 109.36889 * 301.60186 * 4 3 2 6 6 C 1.46896 * 111.00113 * 183.18812 * 5 4 3 7 7 C 1.53006 * 109.47114 * 75.82675 * 6 5 4 8 8 H 1.08997 * 109.47012 * 305.21749 * 7 6 5 9 9 C 1.47201 * 109.46992 * 65.22398 * 7 6 5 10 10 N 6.04132 * 129.93850 * 60.65636 * 2 1 3 11 11 C 1.53001 * 109.46952 * 185.22187 * 7 6 5 12 12 C 1.50704 * 109.47200 * 175.00386 * 11 7 6 13 13 H 1.08005 * 119.99469 * 359.97438 * 12 11 7 14 14 C 1.37870 * 120.00460 * 179.97438 * 12 11 7 15 15 N 1.31522 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00448 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47002 * 89.99903 * 16 14 12 18 18 H 1.48498 * 109.47556 * 210.00165 * 16 14 12 19 19 H 1.48499 * 109.46894 * 330.00360 * 16 14 12 20 20 C 1.46958 * 110.88060 * 59.32194 * 5 4 3 21 21 C 1.46954 * 110.99620 * 123.80554 * 2 1 3 22 22 H 1.09000 * 109.47098 * 59.99298 * 1 2 3 23 23 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46864 * 299.99660 * 1 2 3 25 25 H 1.09002 * 109.48905 * 63.22250 * 3 2 1 26 26 H 1.08998 * 109.51207 * 303.17083 * 3 2 1 27 27 H 1.09008 * 109.48946 * 181.63293 * 4 3 2 28 28 H 1.08998 * 109.50584 * 61.59023 * 4 3 2 29 29 H 1.09003 * 109.47443 * 195.82619 * 6 5 4 30 30 H 1.08999 * 109.47300 * 315.82917 * 6 5 4 31 31 H 1.09004 * 109.47377 * 294.99596 * 11 7 6 32 32 H 1.08997 * 109.47559 * 54.99572 * 11 7 6 33 33 H 0.96994 * 120.00195 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.48631 * 60.64357 * 20 5 4 35 35 H 1.08996 * 109.48696 * 180.71696 * 20 5 4 36 36 H 1.08999 * 109.48659 * 296.77130 * 21 2 1 37 37 H 1.08995 * 109.49314 * 56.84265 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3289 -0.0802 5 7 4.0502 0.5657 1.0597 6 6 5.5191 0.5657 1.0597 7 6 6.0292 1.9244 1.5443 8 1 5.5916 2.7151 0.9350 9 6 5.6444 2.1194 2.9517 10 7 5.3474 2.2699 4.0378 11 6 7.5535 1.9703 1.4213 12 6 8.0454 3.3484 1.7818 13 1 7.3410 4.1150 2.0694 14 6 9.3943 3.6307 1.7444 15 7 10.2521 2.6971 1.3946 16 14 10.0039 5.3391 2.1906 17 1 10.2845 5.3997 3.6476 18 1 11.2473 5.6343 1.4343 19 1 8.9643 6.3415 1.8447 20 6 3.5235 -0.8063 1.0597 21 6 1.9957 -0.7633 1.1400 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6939 1.8773 0.9174 26 1 1.6014 1.9132 -0.8600 27 1 3.9179 2.3447 -0.0512 28 1 3.8257 0.8482 -1.0106 29 1 5.8825 -0.2173 1.7254 30 1 5.8825 0.3807 0.0489 31 1 7.9949 1.2386 2.0980 32 1 7.8426 1.7378 0.3964 33 1 11.2011 2.8957 1.3680 34 1 3.8254 -1.3115 0.1423 35 1 3.9178 -1.3471 1.9199 36 1 1.6938 -0.2822 2.0703 37 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248462573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:12 Heat of formation + Delta-G solvation = 26.961692 kcal Electronic energy + Delta-G solvation = -16825.868501 eV Core-core repulsion = 14216.846530 eV Total energy + Delta-G solvation = -2609.021971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.34668 -36.81993 -35.02082 -33.50664 -31.71138 -30.92608 -28.63206 -26.24433 -24.08267 -23.58774 -22.27267 -21.62980 -19.75843 -16.75909 -16.54039 -15.98155 -15.17652 -14.95359 -14.78665 -14.55703 -14.43276 -13.98552 -13.27724 -12.82663 -12.56941 -12.37917 -12.24575 -12.08740 -11.85235 -11.37934 -11.27555 -11.18183 -11.02875 -10.99972 -10.85575 -10.62832 -10.48241 -10.12086 -9.51458 -9.21324 -8.51112 -8.44519 -8.16201 -6.08597 -4.11640 3.30621 3.37137 3.40392 3.75260 3.81566 3.86162 4.01000 4.42393 4.84240 4.90286 4.94129 5.09522 5.23667 5.28670 5.29609 5.43900 5.44286 5.47660 5.66323 5.67098 5.69837 5.78572 5.89624 5.95383 6.02447 6.10216 6.38146 6.52272 6.85802 6.87973 7.20095 7.21644 7.44232 7.54546 7.86778 8.24612 8.61459 8.93153 9.53818 11.02364 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.004925 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.219886 B = 5683.382535 C = 5696.213479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.054 3.946 5 N -0.544 5.544 6 C 0.063 3.937 7 C 0.013 3.987 8 H 0.099 0.901 9 C 0.258 3.742 10 N -0.483 5.483 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.058 3.942 21 C 0.057 3.943 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.024 0.976 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 -6.591 -5.858 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.269 5.269 6 C -0.066 4.066 7 C -0.009 4.009 8 H 0.117 0.883 9 C -0.059 4.059 10 N -0.160 5.160 11 C -0.008 4.008 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.070 4.070 21 C -0.071 4.071 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.649 -6.398 -4.249 17.433 hybrid contribution 0.566 0.908 -0.135 1.078 sum -15.084 -5.490 -4.384 16.640 Atomic orbital electron populations 1.22335 0.87492 1.01842 1.00602 1.62179 1.07577 1.14349 1.42986 1.22184 0.95079 0.88948 1.00951 1.22219 0.93715 0.99442 0.92031 1.62162 1.08425 1.13447 1.42897 1.22225 0.85613 0.97748 1.00972 1.19214 1.00896 0.96843 0.83983 0.88344 1.28878 0.90526 0.91691 0.94756 1.80971 1.11942 1.10066 1.13042 1.19178 0.84711 0.98190 0.98694 1.21142 0.92278 0.96541 1.46386 0.92528 1.24946 0.96907 0.97102 0.94981 1.69939 1.02390 1.32946 1.47806 0.86598 0.78356 0.84583 0.78574 1.20652 1.21106 1.19747 1.22131 0.93915 0.89892 1.01081 1.22170 0.94969 0.98088 0.91899 0.91440 0.91548 0.95699 0.94011 0.90402 0.89601 0.93711 0.90404 0.92468 0.95607 0.94443 0.92811 0.93902 0.90334 0.94055 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 60.07 0.58 0.80 16 2 N -0.55 -6.06 4.97 -242.75 -1.21 -7.27 16 3 C 0.06 0.64 5.62 -3.77 -0.02 0.62 16 4 C 0.05 0.68 5.43 -3.77 -0.02 0.66 16 5 N -0.54 -7.60 4.35 -234.47 -1.02 -8.61 16 6 C 0.06 0.95 4.36 -3.82 -0.02 0.94 16 7 C 0.01 0.24 2.27 -93.40 -0.21 0.03 16 8 H 0.10 1.74 6.73 -51.93 -0.35 1.39 16 9 C 0.26 5.48 13.67 -20.76 -0.28 5.20 16 10 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -14.04 8.60 -34.44 -0.30 -14.33 16 13 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.06 0.70 5.57 -3.76 -0.02 0.68 16 21 C 0.06 0.63 5.62 -3.77 -0.02 0.61 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.08 6.72 -51.92 -0.35 0.73 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 30 H 0.06 0.81 7.99 -51.93 -0.42 0.39 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -30.22 305.34 -7.78 -38.00 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -6.12 Total: -5.29 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.54 Total: -2.57 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.71 Total: -51.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.22 -7.78 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248462573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.960 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds