Wall clock time and date at job start Sun Mar 29 2020 21:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46912 * 1 3 3 C 1.46950 * 110.99965 * 2 1 4 4 C 1.53049 * 109.36093 * 183.18595 * 3 2 1 5 5 N 1.46951 * 109.36889 * 301.60186 * 4 3 2 6 6 C 1.46896 * 111.00113 * 183.18812 * 5 4 3 7 7 C 1.53006 * 109.47114 * 75.82675 * 6 5 4 8 8 H 1.08997 * 109.47012 * 305.21749 * 7 6 5 9 9 C 1.47201 * 109.46992 * 65.22398 * 7 6 5 10 10 N 6.04132 * 129.93850 * 60.65636 * 2 1 3 11 11 C 1.53001 * 109.46952 * 185.22187 * 7 6 5 12 12 C 1.50704 * 109.47200 * 175.00386 * 11 7 6 13 13 H 1.08005 * 119.99469 * 359.97438 * 12 11 7 14 14 C 1.37870 * 120.00460 * 179.97438 * 12 11 7 15 15 N 1.31522 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00448 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47002 * 89.99903 * 16 14 12 18 18 H 1.48498 * 109.47556 * 210.00165 * 16 14 12 19 19 H 1.48499 * 109.46894 * 330.00360 * 16 14 12 20 20 C 1.46958 * 110.88060 * 59.32194 * 5 4 3 21 21 C 1.46954 * 110.99620 * 123.80554 * 2 1 3 22 22 H 1.09000 * 109.47098 * 59.99298 * 1 2 3 23 23 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46864 * 299.99660 * 1 2 3 25 25 H 1.09002 * 109.48905 * 63.22250 * 3 2 1 26 26 H 1.08998 * 109.51207 * 303.17083 * 3 2 1 27 27 H 1.09008 * 109.48946 * 181.63293 * 4 3 2 28 28 H 1.08998 * 109.50584 * 61.59023 * 4 3 2 29 29 H 1.09003 * 109.47443 * 195.82619 * 6 5 4 30 30 H 1.08999 * 109.47300 * 315.82917 * 6 5 4 31 31 H 1.09004 * 109.47377 * 294.99596 * 11 7 6 32 32 H 1.08997 * 109.47559 * 54.99572 * 11 7 6 33 33 H 0.96994 * 120.00195 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.48631 * 60.64357 * 20 5 4 35 35 H 1.08996 * 109.48696 * 180.71696 * 20 5 4 36 36 H 1.08999 * 109.48659 * 296.77130 * 21 2 1 37 37 H 1.08995 * 109.49314 * 56.84265 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3289 -0.0802 5 7 4.0502 0.5657 1.0597 6 6 5.5191 0.5657 1.0597 7 6 6.0292 1.9244 1.5443 8 1 5.5916 2.7151 0.9350 9 6 5.6444 2.1194 2.9517 10 7 5.3474 2.2699 4.0378 11 6 7.5535 1.9703 1.4213 12 6 8.0454 3.3484 1.7818 13 1 7.3410 4.1150 2.0694 14 6 9.3943 3.6307 1.7444 15 7 10.2521 2.6971 1.3946 16 14 10.0039 5.3391 2.1906 17 1 10.2845 5.3997 3.6476 18 1 11.2473 5.6343 1.4343 19 1 8.9643 6.3415 1.8447 20 6 3.5235 -0.8063 1.0597 21 6 1.9957 -0.7633 1.1400 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6939 1.8773 0.9174 26 1 1.6014 1.9132 -0.8600 27 1 3.9179 2.3447 -0.0512 28 1 3.8257 0.8482 -1.0106 29 1 5.8825 -0.2173 1.7254 30 1 5.8825 0.3807 0.0489 31 1 7.9949 1.2386 2.0980 32 1 7.8426 1.7378 0.3964 33 1 11.2011 2.8957 1.3680 34 1 3.8254 -1.3115 0.1423 35 1 3.9178 -1.3471 1.9199 36 1 1.6938 -0.2822 2.0703 37 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248462573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:11 Heat of formation + Delta-G solvation = 6.613094 kcal Electronic energy + Delta-G solvation = -16826.750882 eV Core-core repulsion = 14216.846530 eV Total energy + Delta-G solvation = -2609.904352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34976 -38.26051 -36.34673 -35.35360 -33.41312 -31.85588 -29.86352 -27.77488 -25.22795 -24.57112 -23.73163 -23.14976 -20.70417 -18.54900 -18.18860 -17.15428 -16.53005 -16.04902 -15.88685 -15.70809 -15.65966 -15.16237 -14.68675 -14.39484 -14.14334 -13.75313 -13.43775 -13.31693 -13.12749 -13.00020 -12.78442 -12.51417 -12.41380 -12.36795 -12.18954 -12.04313 -11.81583 -11.60584 -11.33546 -11.05955 -10.54803 -9.39470 -9.19376 -8.18755 -6.26979 1.40517 1.42770 1.51891 2.06280 2.14041 2.42087 2.91018 3.02135 3.16789 3.35754 3.93973 4.02613 4.13516 4.27817 4.35040 4.45503 4.49233 4.59247 4.65623 4.70916 4.74605 4.80054 4.88341 4.95535 4.99183 5.02567 5.08301 5.13251 5.47464 5.62294 5.79785 5.96383 6.00599 6.16251 6.21591 6.24598 6.83604 6.93457 7.41624 8.92228 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.004925 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.219886 B = 5683.382535 C = 5696.213479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.060 3.940 4 C 0.053 3.947 5 N -0.558 5.558 6 C 0.074 3.926 7 C 0.024 3.976 8 H 0.114 0.886 9 C 0.268 3.732 10 N -0.517 5.517 11 C 0.038 3.962 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.947 3.053 17 H -0.284 1.284 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.058 3.942 21 C 0.060 3.940 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.001 0.999 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.466 -6.568 -6.795 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.068 4.068 4 C -0.075 4.075 5 N -0.283 5.283 6 C -0.055 4.055 7 C 0.002 3.998 8 H 0.132 0.868 9 C -0.048 4.048 10 N -0.194 5.194 11 C -0.001 4.001 12 C -0.577 4.577 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.773 3.227 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.070 4.070 21 C -0.068 4.068 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.756 -6.376 -5.193 18.665 hybrid contribution 0.871 0.877 0.151 1.245 sum -15.885 -5.499 -5.042 17.550 Atomic orbital electron populations 1.22395 0.86072 1.02804 1.00947 1.62224 1.08920 1.13947 1.42705 1.22161 0.94348 0.89376 1.00959 1.22268 0.94486 0.99096 0.91663 1.62101 1.07392 1.14879 1.43952 1.22034 0.86794 0.95200 1.01473 1.19158 0.98019 0.99689 0.82913 0.86834 1.29363 0.89691 0.90617 0.95119 1.80968 1.13004 1.11406 1.14071 1.18997 0.87579 0.95834 0.97679 1.21544 0.92448 0.97950 1.45729 0.92875 1.25695 0.97348 1.00435 0.95161 1.70030 1.02663 1.34653 1.48998 0.85709 0.78226 0.80824 0.77921 1.21053 1.20303 1.18835 1.22173 0.94582 0.88790 1.01411 1.22161 0.94283 0.99047 0.91319 0.90355 0.90331 0.96063 0.95523 0.88695 0.89860 0.93185 0.90550 0.91015 0.98023 0.94610 0.92701 0.93301 0.90249 0.95589 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 127.69 1.23 1.62 16 2 N -0.55 -11.07 4.97 -921.92 -4.58 -15.65 16 3 C 0.06 1.25 5.62 86.31 0.49 1.74 16 4 C 0.05 1.22 5.43 86.31 0.47 1.69 16 5 N -0.56 -14.74 4.35 -895.72 -3.89 -18.64 16 6 C 0.07 2.14 4.36 86.31 0.38 2.52 16 7 C 0.02 0.88 2.27 -12.60 -0.03 0.85 16 8 H 0.11 3.84 6.73 -2.39 -0.02 3.83 16 9 C 0.27 11.28 13.67 89.44 1.22 12.50 16 10 N -0.52 -23.75 18.54 20.01 0.37 -23.38 16 11 C 0.04 1.76 4.42 29.85 0.13 1.89 16 12 C -0.54 -28.66 8.60 25.60 0.22 -28.44 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 16 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 C 0.06 1.31 5.57 86.31 0.48 1.79 16 21 C 0.06 1.23 5.62 86.31 0.49 1.71 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.02 8.13 -2.38 -0.02 1.00 16 24 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.95 6.72 -2.38 -0.02 1.93 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 2.24 7.84 -2.39 -0.02 2.22 16 30 H 0.07 1.89 7.99 -2.39 -0.02 1.87 16 31 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.75 8.00 -2.39 -0.02 1.73 16 36 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 Total: -1.00 -63.16 305.34 0.77 -62.40 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.03 Total: 3.52 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.53 Total: -0.97 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -7.82 Total: -110.48 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -63.16 0.77 -62.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248462573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.010 kcal (2) G-P(sol) polarization free energy of solvation -63.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds