Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 110.99878 * 2 1 4 4 C 1.53051 * 109.36250 * 183.19110 * 3 2 1 5 5 N 1.46956 * 109.36581 * 301.59618 * 4 3 2 6 6 C 1.46895 * 111.00059 * 183.19045 * 5 4 3 7 7 C 1.52994 * 109.47270 * 170.00062 * 6 5 4 8 8 H 1.09009 * 109.47154 * 54.99975 * 7 6 5 9 9 C 1.47200 * 109.47451 * 295.00037 * 7 6 5 10 10 N 6.02263 * 129.98718 * 70.34432 * 2 1 3 11 11 C 1.52996 * 109.47347 * 174.99819 * 7 6 5 12 12 C 1.50702 * 109.47159 * 185.00014 * 11 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 7 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.46956 * 110.87500 * 59.32176 * 5 4 3 21 21 C 1.46957 * 111.00272 * 123.80278 * 2 1 3 22 22 H 1.09001 * 109.47155 * 59.99880 * 1 2 3 23 23 H 1.09007 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47130 * 299.99537 * 1 2 3 25 25 H 1.08993 * 109.48947 * 63.22258 * 3 2 1 26 26 H 1.09004 * 109.50335 * 303.16921 * 3 2 1 27 27 H 1.09010 * 109.48409 * 181.62862 * 4 3 2 28 28 H 1.08998 * 109.50781 * 61.58095 * 4 3 2 29 29 H 1.08998 * 109.47324 * 50.00063 * 6 5 4 30 30 H 1.09002 * 109.47421 * 290.00240 * 6 5 4 31 31 H 1.09004 * 109.47066 * 65.00217 * 11 7 6 32 32 H 1.08994 * 109.47405 * 305.00047 * 11 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.48937 * 60.65000 * 20 5 4 35 35 H 1.09002 * 109.48568 * 180.70808 * 20 5 4 36 36 H 1.09003 * 109.48520 * 296.77730 * 21 2 1 37 37 H 1.08998 * 109.48805 * 56.81679 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5191 0.5659 1.0596 7 6 6.0292 -0.0161 2.3794 8 1 5.5946 -1.0040 2.5329 9 6 5.6398 0.8691 3.4892 10 7 5.3393 1.5522 4.3456 11 6 7.5540 -0.1319 2.3303 12 6 8.0462 -0.8175 3.5788 13 1 7.3419 -1.1390 4.3318 14 6 9.3952 -1.0401 3.7569 15 7 10.2529 -0.6490 2.8397 16 14 10.0046 -1.8968 5.3008 17 1 8.8481 -2.2342 6.1690 18 1 10.7214 -3.1422 4.9258 19 1 10.9290 -0.9957 6.0350 20 6 3.5235 -0.8060 1.0596 21 6 1.9957 -0.7633 1.1400 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6938 1.8773 0.9173 26 1 1.6012 1.9132 -0.8601 27 1 3.9177 2.3449 -0.0514 28 1 3.8256 0.8482 -1.0107 29 1 5.8824 1.5876 0.9486 30 1 5.8825 -0.0410 0.2303 31 1 7.9921 0.8641 2.2660 32 1 7.8462 -0.7144 1.4566 33 1 11.2020 -0.8052 2.9652 34 1 3.8254 -1.3115 0.1422 35 1 3.9179 -1.3470 1.9198 36 1 1.6939 -0.2821 2.0703 37 1 1.6010 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248462574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = 27.793042 kcal Electronic energy + Delta-G solvation = -16847.364813 eV Core-core repulsion = 14238.378892 eV Total energy + Delta-G solvation = -2608.985921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36505 -36.84487 -35.01701 -33.50768 -31.71902 -30.90957 -28.63633 -26.24270 -24.14571 -23.57176 -22.26975 -21.60496 -19.76443 -16.75264 -16.56478 -15.98652 -15.16882 -14.95521 -14.78865 -14.55215 -14.45837 -13.98699 -13.29450 -12.82901 -12.56747 -12.36520 -12.26452 -12.06337 -11.85512 -11.41246 -11.26860 -11.19064 -11.04261 -11.03426 -10.83865 -10.62439 -10.47626 -10.09371 -9.52735 -9.19814 -8.50823 -8.45534 -8.15962 -6.09355 -4.12315 3.28708 3.36987 3.41634 3.74217 3.81805 3.84773 4.01186 4.41861 4.84644 4.90211 4.93806 5.09015 5.23776 5.28595 5.28984 5.43954 5.45364 5.47893 5.66518 5.66748 5.68108 5.78333 5.89685 5.95555 6.02792 6.10777 6.37976 6.51179 6.86107 6.88242 7.19938 7.21463 7.43636 7.53602 7.86171 8.23749 8.60082 8.92660 9.53196 11.01634 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043165 B = 0.004983 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.522754 B = 5618.033175 C = 5669.954779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.057 3.943 4 C 0.058 3.942 5 N -0.544 5.544 6 C 0.063 3.937 7 C 0.010 3.990 8 H 0.100 0.900 9 C 0.257 3.743 10 N -0.481 5.481 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.052 3.948 21 C 0.057 3.943 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.024 0.976 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.369 0.040 -8.682 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.269 5.269 6 C -0.065 4.065 7 C -0.012 4.012 8 H 0.117 0.883 9 C -0.060 4.060 10 N -0.158 5.158 11 C -0.008 4.008 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.076 4.076 21 C -0.071 4.071 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.646 1.077 -7.432 17.355 hybrid contribution 0.583 -0.726 0.543 1.077 sum -15.063 0.351 -6.889 16.567 Atomic orbital electron populations 1.22333 0.87498 1.01934 1.00502 1.62179 1.07571 1.14121 1.43211 1.22166 0.94960 0.89179 1.00800 1.22116 0.93904 0.98726 0.92291 1.62185 1.08400 1.13844 1.42487 1.22217 0.85631 1.02005 0.96658 1.19255 1.01081 0.94795 0.86066 0.88269 1.28858 0.90617 0.93013 0.93481 1.80972 1.11853 1.11322 1.11675 1.19180 0.84622 0.98472 0.98503 1.21180 0.92291 1.38534 1.04323 0.92467 1.24952 0.96915 0.95598 0.96496 1.69951 1.02356 1.46753 1.33976 0.86541 0.78939 0.79317 0.83321 1.19673 1.20858 1.20965 1.22235 0.93705 0.89913 1.01761 1.22186 0.95078 0.98159 0.91721 0.91521 0.91455 0.95723 0.94070 0.90560 0.90319 0.93872 0.90226 0.92695 0.95561 0.94425 0.92859 0.93638 0.89521 0.94047 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 60.07 0.58 0.80 16 2 N -0.55 -6.09 4.97 -242.75 -1.21 -7.30 16 3 C 0.06 0.63 5.62 -3.77 -0.02 0.61 16 4 C 0.06 0.69 5.61 -3.77 -0.02 0.67 16 5 N -0.54 -7.62 4.41 -234.47 -1.03 -8.65 16 6 C 0.06 0.96 4.32 -3.83 -0.02 0.95 16 7 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 8 H 0.10 1.74 6.28 -51.92 -0.33 1.41 16 9 C 0.26 5.45 13.67 -20.76 -0.28 5.17 16 10 N -0.48 -11.07 18.54 42.15 0.78 -10.29 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 13 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.05 0.66 5.41 -3.77 -0.02 0.64 16 21 C 0.06 0.66 5.62 -3.77 -0.02 0.64 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.89 8.07 -51.92 -0.42 0.47 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.21 8.02 -51.93 -0.42 0.80 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.13 6.25 -51.93 -0.32 0.80 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -30.20 304.72 -7.77 -37.97 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -6.09 Total: -5.19 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.52 Total: -2.63 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.72 Total: -51.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -7.77 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248462574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.762 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds