Wall clock time and date at job start Sun Mar 29 2020 21:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 110.99878 * 2 1 4 4 C 1.53051 * 109.36250 * 183.19110 * 3 2 1 5 5 N 1.46956 * 109.36581 * 301.59618 * 4 3 2 6 6 C 1.46895 * 111.00059 * 183.19045 * 5 4 3 7 7 C 1.52994 * 109.47270 * 170.00062 * 6 5 4 8 8 H 1.09009 * 109.47154 * 54.99975 * 7 6 5 9 9 C 1.47200 * 109.47451 * 295.00037 * 7 6 5 10 10 N 6.02263 * 129.98718 * 70.34432 * 2 1 3 11 11 C 1.52996 * 109.47347 * 174.99819 * 7 6 5 12 12 C 1.50702 * 109.47159 * 185.00014 * 11 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 7 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.46956 * 110.87500 * 59.32176 * 5 4 3 21 21 C 1.46957 * 111.00272 * 123.80278 * 2 1 3 22 22 H 1.09001 * 109.47155 * 59.99880 * 1 2 3 23 23 H 1.09007 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47130 * 299.99537 * 1 2 3 25 25 H 1.08993 * 109.48947 * 63.22258 * 3 2 1 26 26 H 1.09004 * 109.50335 * 303.16921 * 3 2 1 27 27 H 1.09010 * 109.48409 * 181.62862 * 4 3 2 28 28 H 1.08998 * 109.50781 * 61.58095 * 4 3 2 29 29 H 1.08998 * 109.47324 * 50.00063 * 6 5 4 30 30 H 1.09002 * 109.47421 * 290.00240 * 6 5 4 31 31 H 1.09004 * 109.47066 * 65.00217 * 11 7 6 32 32 H 1.08994 * 109.47405 * 305.00047 * 11 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.48937 * 60.65000 * 20 5 4 35 35 H 1.09002 * 109.48568 * 180.70808 * 20 5 4 36 36 H 1.09003 * 109.48520 * 296.77730 * 21 2 1 37 37 H 1.08998 * 109.48805 * 56.81679 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5191 0.5659 1.0596 7 6 6.0292 -0.0161 2.3794 8 1 5.5946 -1.0040 2.5329 9 6 5.6398 0.8691 3.4892 10 7 5.3393 1.5522 4.3456 11 6 7.5540 -0.1319 2.3303 12 6 8.0462 -0.8175 3.5788 13 1 7.3419 -1.1390 4.3318 14 6 9.3952 -1.0401 3.7569 15 7 10.2529 -0.6490 2.8397 16 14 10.0046 -1.8968 5.3008 17 1 8.8481 -2.2342 6.1690 18 1 10.7214 -3.1422 4.9258 19 1 10.9290 -0.9957 6.0350 20 6 3.5235 -0.8060 1.0596 21 6 1.9957 -0.7633 1.1400 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6938 1.8773 0.9173 26 1 1.6012 1.9132 -0.8601 27 1 3.9177 2.3449 -0.0514 28 1 3.8256 0.8482 -1.0107 29 1 5.8824 1.5876 0.9486 30 1 5.8825 -0.0410 0.2303 31 1 7.9921 0.8641 2.2660 32 1 7.8462 -0.7144 1.4566 33 1 11.2020 -0.8052 2.9652 34 1 3.8254 -1.3115 0.1422 35 1 3.9179 -1.3470 1.9198 36 1 1.6939 -0.2821 2.0703 37 1 1.6010 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248462574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:13 Heat of formation + Delta-G solvation = 7.383457 kcal Electronic energy + Delta-G solvation = -16848.249839 eV Core-core repulsion = 14238.378892 eV Total energy + Delta-G solvation = -2609.870947 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37930 -38.27473 -36.35340 -35.35324 -33.40923 -31.85403 -29.86823 -27.77672 -25.27174 -24.59629 -23.73230 -23.10671 -20.71732 -18.55623 -18.18538 -17.18174 -16.52939 -16.03962 -15.87427 -15.77692 -15.63614 -15.15843 -14.69591 -14.41338 -14.15071 -13.75641 -13.44098 -13.32475 -13.13007 -13.01015 -12.74979 -12.54311 -12.46557 -12.33601 -12.18900 -12.08359 -11.79405 -11.58672 -11.33647 -11.04748 -10.55185 -9.39349 -9.19317 -8.19288 -6.27444 1.39455 1.42598 1.52984 2.05153 2.12884 2.41836 2.91095 3.02022 3.16336 3.34422 3.93900 3.99890 4.12889 4.28325 4.33289 4.44259 4.49674 4.57900 4.65656 4.71207 4.73660 4.79002 4.88595 4.96203 4.99920 5.02639 5.08380 5.12920 5.46936 5.61478 5.79284 5.96160 6.00314 6.16066 6.20780 6.24138 6.83052 6.92507 7.41248 8.91908 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043165 B = 0.004983 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.522754 B = 5618.033175 C = 5669.954779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.060 3.940 4 C 0.058 3.942 5 N -0.558 5.558 6 C 0.074 3.926 7 C 0.021 3.979 8 H 0.115 0.885 9 C 0.267 3.733 10 N -0.515 5.515 11 C 0.038 3.962 12 C -0.538 4.538 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.948 3.052 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.051 3.949 21 C 0.060 3.940 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.021 0.979 25 H 0.027 0.973 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.002 0.998 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 -0.658 -9.312 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.068 4.068 4 C -0.070 4.070 5 N -0.283 5.283 6 C -0.055 4.055 7 C 0.000 4.000 8 H 0.133 0.867 9 C -0.049 4.049 10 N -0.193 5.193 11 C -0.001 4.001 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.211 1.211 20 C -0.077 4.077 21 C -0.068 4.068 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.732 0.374 -8.067 18.579 hybrid contribution 0.882 -0.498 0.716 1.240 sum -15.850 -0.124 -7.351 17.472 Atomic orbital electron populations 1.22394 0.86066 1.02795 1.00959 1.62224 1.08925 1.13957 1.42699 1.22167 0.94290 0.89382 1.00982 1.22172 0.94556 0.98642 0.91618 1.62142 1.07361 1.14879 1.43903 1.22030 0.86807 1.01880 0.94745 1.19200 0.98190 0.95509 0.87148 0.86702 1.29335 0.89779 0.92511 0.93260 1.80969 1.12920 1.12567 1.12801 1.18996 0.87501 0.96515 0.97077 1.21570 0.92456 1.38281 1.05331 0.92859 1.25701 0.97351 0.96426 0.99178 1.70040 1.02663 1.48004 1.35624 0.85643 0.78346 0.78565 0.80015 1.19398 1.19752 1.21125 1.22270 0.94540 0.89205 1.01708 1.22152 0.94292 0.99051 0.91304 0.90233 0.90453 0.96056 0.95497 0.88559 0.89925 0.93333 0.90384 0.91281 0.97974 0.94627 0.92700 0.93142 0.90076 0.95598 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 127.69 1.23 1.62 16 2 N -0.55 -11.13 4.97 -921.93 -4.58 -15.71 16 3 C 0.06 1.21 5.62 86.31 0.49 1.69 16 4 C 0.06 1.28 5.61 86.31 0.48 1.76 16 5 N -0.56 -14.80 4.41 -895.73 -3.95 -18.75 16 6 C 0.07 2.16 4.32 86.30 0.37 2.53 16 7 C 0.02 0.78 2.14 -12.60 -0.03 0.75 16 8 H 0.12 3.87 6.28 -2.38 -0.01 3.86 16 9 C 0.27 11.23 13.67 89.44 1.22 12.45 16 10 N -0.51 -23.65 18.54 20.01 0.37 -23.28 16 11 C 0.04 1.76 4.42 29.85 0.13 1.89 16 12 C -0.54 -28.62 8.60 25.60 0.22 -28.40 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 14 C 0.01 0.68 5.46 84.66 0.46 1.14 16 15 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 16 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.05 1.21 5.41 86.31 0.47 1.67 16 21 C 0.06 1.29 5.62 86.31 0.49 1.78 16 22 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.04 8.13 -2.38 -0.02 1.02 16 24 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.74 8.07 -2.38 -0.02 1.72 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.30 8.02 -2.39 -0.02 2.28 16 30 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 31 H 0.00 0.09 8.14 -2.38 -0.02 0.08 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 34 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.99 6.25 -2.39 -0.01 1.98 16 36 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 Total: -1.00 -63.14 304.72 0.71 -62.43 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.03 Total: 3.64 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.53 Total: -1.10 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -7.87 Total: -110.47 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.14 0.71 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248462574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.813 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds