Wall clock time and date at job start Sun Mar 29 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 H 1.09003 * 109.46914 * 185.15748 * 3 2 1 5 5 C 1.50697 * 109.47262 * 305.15685 * 3 2 1 6 6 H 1.08007 * 119.99535 * 119.99984 * 5 3 2 7 7 C 1.37875 * 120.00194 * 300.00179 * 5 3 2 8 8 N 1.31509 * 119.99881 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99974 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47387 * 89.99904 * 9 7 5 11 11 H 1.48504 * 109.46951 * 209.99998 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99932 * 9 7 5 13 13 N 1.46897 * 109.46936 * 65.16019 * 3 2 1 14 14 C 1.46902 * 110.99944 * 85.78387 * 13 3 2 15 15 H 1.09003 * 110.01920 * 323.90511 * 14 13 3 16 16 C 1.56652 * 111.60960 * 85.74431 * 14 13 3 17 17 C 1.54953 * 104.62841 * 141.84048 * 16 14 13 18 18 C 1.54563 * 102.56891 * 322.06745 * 17 16 14 19 19 H 1.08994 * 112.44887 * 277.72599 * 18 17 16 20 20 C 1.53181 * 109.95791 * 152.55796 * 18 17 16 21 21 C 1.53481 * 107.46401 * 263.83222 * 20 18 17 22 22 C 1.53497 * 107.22127 * 1.08717 * 21 20 18 23 23 C 1.54097 * 106.35865 * 342.16501 * 22 21 20 24 24 H 1.08993 * 112.08203 * 265.51590 * 23 22 21 25 25 H 1.08999 * 109.47429 * 294.83464 * 1 2 3 26 26 H 1.09006 * 109.47435 * 54.83241 * 1 2 3 27 27 H 1.08997 * 109.47603 * 174.83183 * 1 2 3 28 28 H 1.09006 * 109.46435 * 240.00611 * 2 1 3 29 29 H 1.09000 * 109.47117 * 120.00477 * 2 1 3 30 30 H 0.97005 * 119.99689 * 179.97438 * 8 7 5 31 31 H 1.00895 * 111.00231 * 321.82715 * 13 3 2 32 32 H 1.09000 * 110.10088 * 23.12699 * 16 14 13 33 33 H 1.09003 * 110.49371 * 260.75438 * 16 14 13 34 34 H 1.08994 * 110.79357 * 203.79917 * 17 16 14 35 35 H 1.09007 * 110.94677 * 80.40818 * 17 16 14 36 36 H 1.09000 * 109.84200 * 144.35853 * 20 18 17 37 37 H 1.08999 * 109.85062 * 23.31421 * 20 18 17 38 38 H 1.09001 * 109.88610 * 241.68624 * 21 20 18 39 39 H 1.08999 * 110.02540 * 120.56892 * 21 20 18 40 40 H 1.09001 * 110.08156 * 222.94349 * 22 21 20 41 41 H 1.09007 * 110.12723 * 101.41545 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6612 1.7560 -2.4511 8 7 2.4026 0.6915 -2.6674 9 14 0.9132 2.6816 -3.8910 10 1 1.8554 3.7358 -4.3450 11 1 0.6537 1.7359 -5.0062 12 1 -0.3642 3.3088 -3.4664 13 7 1.6547 2.0981 1.2568 14 6 2.6418 1.8344 2.3123 15 1 3.0321 0.8214 2.2136 16 6 3.8255 2.8593 2.2643 17 6 4.1574 3.1437 3.7509 18 6 2.7598 3.1588 4.4107 19 1 2.2559 4.1185 4.2963 20 6 2.8720 2.7494 5.8825 21 6 2.5589 1.2494 5.9685 22 6 2.2866 0.7593 4.5396 23 6 1.9929 2.0165 3.6982 24 1 0.9247 2.2211 3.6263 25 1 -0.3634 0.4316 0.9326 26 1 -0.3634 0.5919 -0.8401 27 1 -0.3634 -1.0234 -0.0926 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.5606 0.3868 -3.5747 31 1 0.7313 1.8118 1.5457 32 1 3.5090 3.7739 1.7627 33 1 4.6869 2.4241 1.7578 34 1 4.6471 4.1113 3.8598 35 1 4.7750 2.3497 4.1711 36 1 2.1538 3.3122 6.4789 37 1 3.8832 2.9379 6.2431 38 1 1.6776 1.0895 6.5897 39 1 3.4104 0.7138 6.3883 40 1 1.4239 0.0931 4.5304 41 1 3.1623 0.2425 4.1470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:50 Heat of formation + Delta-G solvation = -29.560164 kcal Electronic energy + Delta-G solvation = -17877.158792 eV Core-core repulsion = 15369.226193 eV Total energy + Delta-G solvation = -2507.932599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53010 -36.14701 -33.33738 -31.85624 -30.54824 -28.75578 -27.01637 -26.11909 -23.95617 -23.14153 -20.26362 -20.25507 -18.86736 -18.78107 -16.05532 -15.99758 -14.89496 -14.72266 -14.42408 -13.85554 -13.33786 -13.20599 -12.96018 -12.51856 -12.38673 -12.02726 -11.59771 -11.33622 -11.05018 -10.87663 -10.78842 -10.64193 -10.52041 -10.47197 -10.30039 -10.27146 -10.20164 -9.99262 -9.80781 -9.58125 -9.42740 -8.88289 -8.28798 -7.08355 -5.92315 -3.93330 3.35573 3.42039 3.45874 4.48526 4.63961 4.72510 4.79207 5.28043 5.35405 5.39635 5.46300 5.51024 5.63205 5.76059 5.85560 5.89287 6.00454 6.06098 6.10598 6.18008 6.19375 6.29634 6.32610 6.39270 6.39391 6.42009 6.59660 6.61714 6.65964 6.73097 6.90569 6.95320 7.35096 7.41120 7.57910 7.76910 7.96719 8.37998 8.66075 8.73650 9.12899 9.70232 11.14741 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.006226 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.791456 B = 4496.437047 C = 4819.140608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.091 3.909 15 H 0.036 0.964 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.087 4.087 19 H 0.078 0.922 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.091 4.091 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.258 0.742 31 H 0.326 0.674 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 1.160 14.070 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.054 0.946 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.105 4.105 19 H 0.096 0.904 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.110 4.110 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.185 1.649 13.737 13.886 hybrid contribution -0.540 -0.633 -0.686 1.079 sum 0.645 1.016 13.051 13.106 Atomic orbital electron populations 1.21590 0.97780 0.98559 1.00724 1.22096 0.94922 1.01335 1.00068 1.19201 0.95825 0.88393 0.85779 0.95058 1.21093 1.30267 1.11337 0.89750 0.92131 1.24913 0.95643 0.95171 0.98702 1.69887 1.39259 1.24028 1.20543 0.86599 0.79601 0.79542 0.82246 1.20882 1.21529 1.19988 1.60784 1.03415 1.63214 1.03671 1.22621 0.93281 0.96296 0.89742 0.94592 1.22801 0.97152 1.00269 0.94791 1.22473 0.95935 1.00541 0.96336 1.22277 0.96258 0.98606 0.93376 0.90362 1.21920 1.01004 0.95787 0.96760 1.21916 1.00710 0.95935 0.97257 1.22244 1.01221 0.97642 0.94625 1.22614 0.99532 0.94012 0.94844 0.90270 0.95444 0.91264 0.95904 0.89063 0.97220 0.93225 0.85503 0.90581 0.92681 0.92211 0.92058 0.92456 0.92077 0.92411 0.92361 0.92264 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.35 2.20 -68.87 -0.15 5.20 16 4 H 0.03 0.87 7.75 -51.93 -0.40 0.47 16 5 C -0.49 -13.20 7.25 -34.44 -0.25 -13.45 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -25.55 11.38 55.43 0.63 -24.91 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.36 6.11 -98.29 -0.60 -14.96 16 14 C 0.09 1.65 2.62 -65.16 -0.17 1.48 16 15 H 0.04 0.70 6.24 -51.93 -0.32 0.38 16 16 C -0.11 -1.91 6.51 -23.73 -0.15 -2.07 16 17 C -0.12 -1.56 6.05 -24.88 -0.15 -1.72 16 18 C -0.09 -1.14 3.65 -88.68 -0.32 -1.47 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.12 -1.30 6.24 -26.39 -0.16 -1.46 16 21 C -0.12 -1.34 6.78 -26.22 -0.18 -1.52 16 22 C -0.12 -1.58 6.09 -25.90 -0.16 -1.73 16 23 C -0.09 -1.35 3.45 -88.44 -0.31 -1.66 16 24 H 0.08 1.21 7.60 -51.93 -0.39 0.81 16 25 H 0.03 0.53 6.64 -51.93 -0.34 0.18 16 26 H 0.07 1.64 6.85 -51.93 -0.36 1.28 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.43 6.22 -51.93 -0.32 2.11 16 29 H 0.01 0.20 7.44 -51.93 -0.39 -0.18 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.33 6.64 6.01 -39.29 -0.24 6.40 16 32 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.80 7.98 -51.93 -0.41 0.38 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -27.35 306.53 -9.58 -36.94 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.31 Total: 4.79 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.90 Total: -22.96 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.03 Total: -39.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.35 -9.58 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.376 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds