Wall clock time and date at job start Sun Mar 29 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 H 1.09003 * 109.46914 * 185.15748 * 3 2 1 5 5 C 1.50697 * 109.47262 * 305.15685 * 3 2 1 6 6 H 1.08007 * 119.99535 * 119.99984 * 5 3 2 7 7 C 1.37875 * 120.00194 * 300.00179 * 5 3 2 8 8 N 1.31509 * 119.99881 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99974 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47387 * 89.99904 * 9 7 5 11 11 H 1.48504 * 109.46951 * 209.99998 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99932 * 9 7 5 13 13 N 1.46897 * 109.46936 * 65.16019 * 3 2 1 14 14 C 1.46902 * 110.99944 * 85.78387 * 13 3 2 15 15 H 1.09003 * 110.01920 * 323.90511 * 14 13 3 16 16 C 1.56652 * 111.60960 * 85.74431 * 14 13 3 17 17 C 1.54953 * 104.62841 * 141.84048 * 16 14 13 18 18 C 1.54563 * 102.56891 * 322.06745 * 17 16 14 19 19 H 1.08994 * 112.44887 * 277.72599 * 18 17 16 20 20 C 1.53181 * 109.95791 * 152.55796 * 18 17 16 21 21 C 1.53481 * 107.46401 * 263.83222 * 20 18 17 22 22 C 1.53497 * 107.22127 * 1.08717 * 21 20 18 23 23 C 1.54097 * 106.35865 * 342.16501 * 22 21 20 24 24 H 1.08993 * 112.08203 * 265.51590 * 23 22 21 25 25 H 1.08999 * 109.47429 * 294.83464 * 1 2 3 26 26 H 1.09006 * 109.47435 * 54.83241 * 1 2 3 27 27 H 1.08997 * 109.47603 * 174.83183 * 1 2 3 28 28 H 1.09006 * 109.46435 * 240.00611 * 2 1 3 29 29 H 1.09000 * 109.47117 * 120.00477 * 2 1 3 30 30 H 0.97005 * 119.99689 * 179.97438 * 8 7 5 31 31 H 1.00895 * 111.00231 * 321.82715 * 13 3 2 32 32 H 1.09000 * 110.10088 * 23.12699 * 16 14 13 33 33 H 1.09003 * 110.49371 * 260.75438 * 16 14 13 34 34 H 1.08994 * 110.79357 * 203.79917 * 17 16 14 35 35 H 1.09007 * 110.94677 * 80.40818 * 17 16 14 36 36 H 1.09000 * 109.84200 * 144.35853 * 20 18 17 37 37 H 1.08999 * 109.85062 * 23.31421 * 20 18 17 38 38 H 1.09001 * 109.88610 * 241.68624 * 21 20 18 39 39 H 1.08999 * 110.02540 * 120.56892 * 21 20 18 40 40 H 1.09001 * 110.08156 * 222.94349 * 22 21 20 41 41 H 1.09007 * 110.12723 * 101.41545 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6612 1.7560 -2.4511 8 7 2.4026 0.6915 -2.6674 9 14 0.9132 2.6816 -3.8910 10 1 1.8554 3.7358 -4.3450 11 1 0.6537 1.7359 -5.0062 12 1 -0.3642 3.3088 -3.4664 13 7 1.6547 2.0981 1.2568 14 6 2.6418 1.8344 2.3123 15 1 3.0321 0.8214 2.2136 16 6 3.8255 2.8593 2.2643 17 6 4.1574 3.1437 3.7509 18 6 2.7598 3.1588 4.4107 19 1 2.2559 4.1185 4.2963 20 6 2.8720 2.7494 5.8825 21 6 2.5589 1.2494 5.9685 22 6 2.2866 0.7593 4.5396 23 6 1.9929 2.0165 3.6982 24 1 0.9247 2.2211 3.6263 25 1 -0.3634 0.4316 0.9326 26 1 -0.3634 0.5919 -0.8401 27 1 -0.3634 -1.0234 -0.0926 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.5606 0.3868 -3.5747 31 1 0.7313 1.8118 1.5457 32 1 3.5090 3.7739 1.7627 33 1 4.6869 2.4241 1.7578 34 1 4.6471 4.1113 3.8598 35 1 4.7750 2.3497 4.1711 36 1 2.1538 3.3122 6.4789 37 1 3.8832 2.9379 6.2431 38 1 1.6776 1.0895 6.5897 39 1 3.4104 0.7138 6.3883 40 1 1.4239 0.0931 4.5304 41 1 3.1623 0.2425 4.1470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:50 Heat of formation + Delta-G solvation = -44.112877 kcal Electronic energy + Delta-G solvation = -17877.789845 eV Core-core repulsion = 15369.226193 eV Total energy + Delta-G solvation = -2508.563652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73146 -37.90180 -34.83398 -33.58097 -32.10886 -30.15334 -28.23825 -27.92685 -25.50550 -24.88519 -21.83636 -21.24643 -20.55875 -19.97358 -18.06347 -17.20621 -16.69384 -16.25373 -15.86856 -15.15434 -14.99609 -14.53270 -14.30487 -14.24852 -14.01176 -13.63270 -12.99105 -12.80106 -12.70799 -12.46234 -12.33925 -12.18750 -12.02307 -11.92868 -11.66906 -11.51798 -11.47475 -11.39733 -11.29825 -11.20934 -10.90204 -10.89305 -10.42131 -8.84392 -8.04386 -6.12768 1.42551 1.43714 1.53713 2.46114 3.24127 3.53499 3.60576 3.65911 3.91812 4.29538 4.32870 4.42914 4.48122 4.53662 4.59481 4.64540 4.71790 4.75052 4.77501 4.90146 4.96290 5.02369 5.06926 5.09985 5.13777 5.15247 5.20261 5.36288 5.37770 5.41051 5.44586 5.53791 5.55642 5.64512 5.70105 5.74695 5.90083 6.35781 6.75132 6.93820 7.02934 7.55319 9.01073 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.006226 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.791456 B = 4496.437047 C = 4819.140608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 C 0.225 3.775 4 H -0.008 1.008 5 C -0.498 4.498 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.682 5.682 14 C 0.088 3.912 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.084 4.084 19 H 0.078 0.922 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.089 4.089 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.331 0.669 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 1.661 15.981 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.116 3.884 4 H 0.009 0.991 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.313 5.313 14 C -0.023 4.023 15 H 0.036 0.964 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.103 4.103 19 H 0.096 0.904 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.107 4.107 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.490 2.156 15.667 15.822 hybrid contribution -0.286 -0.797 -1.294 1.546 sum 0.204 1.359 14.373 14.438 Atomic orbital electron populations 1.21465 0.95811 0.99554 1.00853 1.21937 0.96587 1.00187 0.98990 1.18907 0.93190 0.89253 0.87060 0.99051 1.21305 1.30183 1.11220 0.90924 0.93048 1.25611 0.96012 0.95899 1.01075 1.70024 1.40193 1.25178 1.20939 0.85657 0.78970 0.78351 0.79241 1.20701 1.21111 1.19291 1.60692 1.04388 1.62787 1.03431 1.22725 0.93171 0.95546 0.90838 0.96381 1.22788 0.96250 0.98836 0.97435 1.22435 0.96736 1.01747 0.93244 1.22280 0.95268 0.97910 0.94852 0.90382 1.21891 1.02317 0.95777 0.94925 1.21903 1.01843 0.95947 0.95673 1.22216 1.00864 0.96733 0.95850 1.22570 0.99252 0.95955 0.92968 0.90519 0.93259 0.93549 0.93981 0.92216 0.96108 0.93288 0.84970 0.92622 0.94237 0.90576 0.91047 0.91055 0.90769 0.91127 0.91208 0.92066 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.40 71.98 0.68 -4.41 16 2 C -0.14 -6.62 5.49 30.60 0.17 -6.46 16 3 C 0.22 11.50 2.20 44.17 0.10 11.60 16 4 H -0.01 -0.49 7.75 -2.39 -0.02 -0.51 16 5 C -0.50 -27.65 7.25 25.60 0.19 -27.47 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.66 5.28 84.65 0.45 1.11 16 8 N -0.92 -53.83 11.38 21.45 0.24 -53.59 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.68 -29.29 6.11 -464.89 -2.84 -32.13 16 14 C 0.09 3.19 2.62 46.57 0.12 3.32 16 15 H 0.02 0.73 6.24 -2.39 -0.01 0.71 16 16 C -0.11 -4.00 6.51 32.54 0.21 -3.78 16 17 C -0.10 -2.66 6.05 31.79 0.19 -2.47 16 18 C -0.08 -2.04 3.65 -9.54 -0.03 -2.07 16 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.11 -2.07 6.24 30.82 0.19 -1.87 16 21 C -0.12 -2.18 6.78 30.92 0.21 -1.97 16 22 C -0.12 -2.91 6.09 31.13 0.19 -2.72 16 23 C -0.09 -2.51 3.45 -9.38 -0.03 -2.54 16 24 H 0.08 2.22 7.60 -2.39 -0.02 2.20 16 25 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 26 H 0.05 2.18 6.85 -2.38 -0.02 2.16 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 3.27 6.22 -2.38 -0.01 3.26 16 29 H 0.02 0.92 7.44 -2.39 -0.02 0.90 16 30 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.33 13.41 6.01 -89.70 -0.54 12.87 16 32 H 0.05 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.70 7.98 -2.38 -0.02 1.68 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.22 7.78 -2.39 -0.02 1.20 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.42 7.29 -2.38 -0.02 1.41 16 Total: -1.00 -59.74 306.53 2.50 -57.24 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.44 Total: 21.65 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 2.62 Total: -39.73 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.60 Total: -85.72 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -59.74 2.50 -57.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.129 kcal (2) G-P(sol) polarization free energy of solvation -59.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds