Wall clock time and date at job start Sun Mar 29 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 H 1.08995 * 109.46954 * 304.14317 * 3 2 1 5 5 C 1.50701 * 109.47251 * 184.14185 * 3 2 1 6 6 H 1.07999 * 119.99906 * 240.00054 * 5 3 2 7 7 C 1.37874 * 119.99927 * 59.99850 * 5 3 2 8 8 N 1.31515 * 120.00324 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47185 * 59.99871 * 9 7 5 11 11 H 1.48506 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47100 * 300.00178 * 9 7 5 13 13 N 1.46902 * 109.46845 * 64.14188 * 3 2 1 14 14 C 1.46905 * 110.99415 * 204.63433 * 13 3 2 15 15 H 1.09000 * 109.98868 * 324.54426 * 14 13 3 16 16 C 1.54219 * 109.99835 * 85.90169 * 14 13 3 17 17 C 1.56294 * 104.77324 * 141.68778 * 16 14 13 18 18 C 1.54566 * 102.04390 * 322.88583 * 17 16 14 19 19 H 1.09006 * 111.74688 * 276.57527 * 18 17 16 20 20 C 1.53171 * 109.96001 * 151.91720 * 18 17 16 21 21 C 1.53472 * 107.46498 * 262.93128 * 20 18 17 22 22 C 1.53500 * 107.22213 * 1.08764 * 21 20 18 23 23 C 1.54099 * 106.40204 * 342.13832 * 22 21 20 24 24 H 1.09001 * 112.08024 * 265.54374 * 23 22 21 25 25 H 1.08995 * 109.47373 * 294.90937 * 1 2 3 26 26 H 1.09004 * 109.46867 * 54.91272 * 1 2 3 27 27 H 1.09004 * 109.46762 * 174.90318 * 1 2 3 28 28 H 1.09006 * 109.47640 * 239.99487 * 2 1 3 29 29 H 1.09010 * 109.46998 * 119.99689 * 2 1 3 30 30 H 0.96998 * 120.00244 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99965 * 80.68936 * 13 3 2 32 32 H 1.09001 * 110.47697 * 260.90400 * 16 14 13 33 33 H 1.08996 * 110.47512 * 23.39200 * 16 14 13 34 34 H 1.09001 * 111.59934 * 204.54144 * 17 16 14 35 35 H 1.08996 * 110.48227 * 80.72932 * 17 16 14 36 36 H 1.09002 * 109.84987 * 143.46142 * 20 18 17 37 37 H 1.08995 * 109.85775 * 22.41346 * 20 18 17 38 38 H 1.09002 * 109.89739 * 241.68096 * 21 20 18 39 39 H 1.09003 * 110.02671 * 120.56713 * 21 20 18 40 40 H 1.09002 * 110.08038 * 101.38638 * 22 21 20 41 41 H 1.08998 * 110.08449 * 222.88114 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 -0.8505 5 6 3.5436 1.4437 -0.1026 6 1 4.1378 1.8922 0.6798 7 6 4.1604 0.8723 -1.1953 8 7 3.4367 0.3266 -2.1483 9 14 6.0240 0.8744 -1.3229 10 1 6.6004 0.1463 -0.1640 11 1 6.4347 0.2046 -2.5830 12 1 6.5186 2.2747 -1.3232 13 7 1.6337 2.1055 1.2464 14 6 1.5658 3.5623 1.0697 15 1 2.3510 3.8921 0.3894 16 6 0.1836 3.9624 0.5150 17 6 -0.1696 5.2962 1.2492 18 6 0.3985 5.0453 2.6647 19 1 -0.2993 4.4841 3.2863 20 6 0.7919 6.3758 3.3136 21 6 2.2996 6.5651 3.0986 22 6 2.7995 5.3563 2.2953 23 6 1.7190 4.2661 2.4320 24 1 1.9365 3.5733 3.2449 25 1 -0.3634 0.4328 0.9320 26 1 -0.3633 0.5908 -0.8410 27 1 -0.3633 -1.0237 -0.0913 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8707 -0.0751 -2.9172 31 1 2.2536 1.8617 2.0043 32 1 0.2358 4.1186 -0.5625 33 1 -0.5581 3.2002 0.7534 34 1 -1.2466 5.4598 1.2880 35 1 0.3338 6.1380 0.7740 36 1 0.5710 6.3468 4.3806 37 1 0.2454 7.1931 2.8430 38 1 2.8092 6.6070 4.0613 39 1 2.4848 7.4832 2.5410 40 1 2.9251 5.6293 1.2476 41 1 3.7447 4.9998 2.7047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:52 Heat of formation + Delta-G solvation = -34.090594 kcal Electronic energy + Delta-G solvation = -17902.471635 eV Core-core repulsion = 15394.342581 eV Total energy + Delta-G solvation = -2508.129053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.45748 -35.88129 -33.27420 -31.76711 -30.90520 -28.85795 -26.93405 -26.21463 -23.97689 -22.49154 -20.25685 -19.96707 -19.19889 -18.57381 -16.48082 -15.98193 -14.86909 -14.68109 -14.28649 -13.77002 -13.35300 -13.15696 -12.81300 -12.55787 -12.38296 -11.57787 -11.36557 -11.32672 -11.09266 -11.06768 -10.84171 -10.66413 -10.57625 -10.44981 -10.25504 -10.19155 -10.09442 -10.04955 -9.76715 -9.51777 -9.32004 -8.97963 -8.33861 -7.15627 -5.95998 -4.09009 3.28971 3.34245 3.36603 4.41463 4.71606 4.79379 4.85642 5.26816 5.36375 5.43127 5.51950 5.58871 5.71607 5.81430 5.93069 5.96295 6.09772 6.13250 6.16292 6.25982 6.30901 6.35335 6.41778 6.45764 6.46854 6.54613 6.68298 6.73100 6.75850 6.83130 6.98441 7.19448 7.23112 7.51830 7.66666 7.82316 8.14729 8.23034 8.41839 8.75665 9.05358 9.58471 11.03696 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.007678 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.264243 B = 3645.837113 C = 4451.003355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.096 3.904 15 H 0.049 0.951 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.088 4.088 19 H 0.075 0.925 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.088 4.088 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.325 0.675 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 9.100 7.860 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.314 5.314 14 C -0.014 4.014 15 H 0.067 0.933 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.106 4.106 19 H 0.093 0.907 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.107 4.107 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.611 8.905 7.547 12.952 hybrid contribution 2.140 0.178 -0.235 2.160 sum -3.471 9.083 7.313 12.167 Atomic orbital electron populations 1.21683 0.99051 0.98126 1.00349 1.21496 0.92043 0.99434 1.01523 1.19150 0.92393 0.91037 0.86675 0.95040 1.21860 0.92866 1.37786 1.05753 0.93013 1.24927 0.97797 0.95088 0.95701 1.69869 1.34893 1.38103 1.09545 0.86753 0.86317 0.78139 0.77333 1.20329 1.21253 1.20452 1.61038 1.55829 1.05338 1.09185 1.22119 0.95956 0.89532 0.93831 0.93264 1.22635 0.97794 0.95836 0.98598 1.22726 0.99402 0.98096 0.95235 1.22310 0.97092 0.94939 0.96298 0.90662 1.21916 0.95923 0.97605 1.00011 1.21926 0.95751 0.98417 0.99762 1.22234 0.98367 0.94755 1.00340 1.22616 0.93887 0.96288 0.97940 0.90226 0.93464 0.94512 0.95828 0.89333 0.95234 0.92892 0.85777 0.92730 0.91024 0.92227 0.92083 0.92561 0.92172 0.92498 0.92415 0.91590 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.32 1.83 -68.86 -0.13 5.19 16 4 H 0.03 0.87 7.71 -51.93 -0.40 0.47 16 5 C -0.54 -14.66 8.26 -34.44 -0.28 -14.94 16 6 H 0.05 1.39 7.75 -52.49 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.18 11.30 55.43 0.63 -24.56 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.24 5.52 -99.68 -0.55 -14.79 16 14 C 0.10 1.79 2.59 -66.49 -0.17 1.62 16 15 H 0.05 1.06 6.71 -51.93 -0.35 0.71 16 16 C -0.11 -1.88 6.31 -24.33 -0.15 -2.03 16 17 C -0.12 -1.61 6.18 -24.14 -0.15 -1.76 16 18 C -0.09 -1.18 3.59 -88.61 -0.32 -1.50 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.12 -1.36 6.24 -26.40 -0.16 -1.52 16 21 C -0.12 -1.45 6.78 -26.23 -0.18 -1.62 16 22 C -0.12 -1.72 6.12 -25.90 -0.16 -1.88 16 23 C -0.09 -1.36 3.51 -88.37 -0.31 -1.67 16 24 H 0.08 1.25 7.64 -51.93 -0.40 0.85 16 25 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.33 6.77 7.81 -39.29 -0.31 6.46 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.83 7.97 -51.93 -0.41 0.41 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.02 7.28 -51.93 -0.38 0.64 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -27.01 311.80 -9.69 -36.71 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.55 Total: 5.24 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -1.89 Total: -23.54 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.08 Total: -39.35 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.01 -9.69 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds