Wall clock time and date at job start Sun Mar 29 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 H 1.08995 * 109.46954 * 304.14317 * 3 2 1 5 5 C 1.50701 * 109.47251 * 184.14185 * 3 2 1 6 6 H 1.07999 * 119.99906 * 240.00054 * 5 3 2 7 7 C 1.37874 * 119.99927 * 59.99850 * 5 3 2 8 8 N 1.31515 * 120.00324 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47185 * 59.99871 * 9 7 5 11 11 H 1.48506 * 109.47242 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47100 * 300.00178 * 9 7 5 13 13 N 1.46902 * 109.46845 * 64.14188 * 3 2 1 14 14 C 1.46905 * 110.99415 * 204.63433 * 13 3 2 15 15 H 1.09000 * 109.98868 * 324.54426 * 14 13 3 16 16 C 1.54219 * 109.99835 * 85.90169 * 14 13 3 17 17 C 1.56294 * 104.77324 * 141.68778 * 16 14 13 18 18 C 1.54566 * 102.04390 * 322.88583 * 17 16 14 19 19 H 1.09006 * 111.74688 * 276.57527 * 18 17 16 20 20 C 1.53171 * 109.96001 * 151.91720 * 18 17 16 21 21 C 1.53472 * 107.46498 * 262.93128 * 20 18 17 22 22 C 1.53500 * 107.22213 * 1.08764 * 21 20 18 23 23 C 1.54099 * 106.40204 * 342.13832 * 22 21 20 24 24 H 1.09001 * 112.08024 * 265.54374 * 23 22 21 25 25 H 1.08995 * 109.47373 * 294.90937 * 1 2 3 26 26 H 1.09004 * 109.46867 * 54.91272 * 1 2 3 27 27 H 1.09004 * 109.46762 * 174.90318 * 1 2 3 28 28 H 1.09006 * 109.47640 * 239.99487 * 2 1 3 29 29 H 1.09010 * 109.46998 * 119.99689 * 2 1 3 30 30 H 0.96998 * 120.00244 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99965 * 80.68936 * 13 3 2 32 32 H 1.09001 * 110.47697 * 260.90400 * 16 14 13 33 33 H 1.08996 * 110.47512 * 23.39200 * 16 14 13 34 34 H 1.09001 * 111.59934 * 204.54144 * 17 16 14 35 35 H 1.08996 * 110.48227 * 80.72932 * 17 16 14 36 36 H 1.09002 * 109.84987 * 143.46142 * 20 18 17 37 37 H 1.08995 * 109.85775 * 22.41346 * 20 18 17 38 38 H 1.09002 * 109.89739 * 241.68096 * 21 20 18 39 39 H 1.09003 * 110.02671 * 120.56713 * 21 20 18 40 40 H 1.09002 * 110.08038 * 101.38638 * 22 21 20 41 41 H 1.08998 * 110.08449 * 222.88114 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 -0.8505 5 6 3.5436 1.4437 -0.1026 6 1 4.1378 1.8922 0.6798 7 6 4.1604 0.8723 -1.1953 8 7 3.4367 0.3266 -2.1483 9 14 6.0240 0.8744 -1.3229 10 1 6.6004 0.1463 -0.1640 11 1 6.4347 0.2046 -2.5830 12 1 6.5186 2.2747 -1.3232 13 7 1.6337 2.1055 1.2464 14 6 1.5658 3.5623 1.0697 15 1 2.3510 3.8921 0.3894 16 6 0.1836 3.9624 0.5150 17 6 -0.1696 5.2962 1.2492 18 6 0.3985 5.0453 2.6647 19 1 -0.2993 4.4841 3.2863 20 6 0.7919 6.3758 3.3136 21 6 2.2996 6.5651 3.0986 22 6 2.7995 5.3563 2.2953 23 6 1.7190 4.2661 2.4320 24 1 1.9365 3.5733 3.2449 25 1 -0.3634 0.4328 0.9320 26 1 -0.3633 0.5908 -0.8410 27 1 -0.3633 -1.0237 -0.0913 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8707 -0.0751 -2.9172 31 1 2.2536 1.8617 2.0043 32 1 0.2358 4.1186 -0.5625 33 1 -0.5581 3.2002 0.7534 34 1 -1.2466 5.4598 1.2880 35 1 0.3338 6.1380 0.7740 36 1 0.5710 6.3468 4.3806 37 1 0.2454 7.1931 2.8430 38 1 2.8092 6.6070 4.0613 39 1 2.4848 7.4832 2.5410 40 1 2.9251 5.6293 1.2476 41 1 3.7447 4.9998 2.7047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:52 Heat of formation + Delta-G solvation = -48.108574 kcal Electronic energy + Delta-G solvation = -17903.079500 eV Core-core repulsion = 15394.342581 eV Total energy + Delta-G solvation = -2508.736918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70262 -37.64646 -34.82470 -33.57596 -32.46009 -30.25518 -28.13928 -28.05639 -25.49857 -24.28060 -21.69617 -21.24677 -20.80379 -19.86466 -18.55063 -17.25498 -16.66979 -16.06365 -15.80708 -15.24785 -14.94351 -14.65819 -14.28952 -14.07268 -13.74410 -13.26808 -13.18439 -12.98989 -12.70173 -12.62451 -12.38017 -12.24636 -11.99926 -11.81746 -11.64933 -11.56376 -11.42039 -11.38151 -11.32435 -11.15515 -10.93508 -10.85517 -10.45869 -8.99050 -8.05299 -6.28094 1.36471 1.36753 1.44576 2.38400 3.13265 3.57458 3.61789 3.68285 3.95468 4.30388 4.37160 4.45317 4.51708 4.61623 4.69278 4.75376 4.77654 4.78795 4.89221 4.94216 4.97703 5.06981 5.11315 5.14093 5.17894 5.18952 5.24296 5.38306 5.41017 5.43770 5.47978 5.53753 5.56819 5.65612 5.68535 5.80925 6.13016 6.22560 6.44520 6.88458 7.05390 7.43490 8.90424 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.007678 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.264243 B = 3645.837113 C = 4451.003355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.094 3.906 15 H 0.012 0.988 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.083 4.083 19 H 0.082 0.918 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 10.318 9.566 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.013 0.987 5 C -0.598 4.598 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.030 0.970 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.101 4.101 19 H 0.101 0.899 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.106 4.106 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.056 10.134 9.266 15.008 hybrid contribution 2.281 -0.217 -0.799 2.426 sum -3.775 9.917 8.467 13.575 Atomic orbital electron populations 1.21530 0.96357 0.99414 1.00579 1.21363 0.94437 0.98512 0.99862 1.18885 0.91148 0.91307 0.87032 0.98654 1.22165 0.94222 1.37612 1.05771 0.93470 1.25663 1.02090 0.94848 0.95455 1.70002 1.36487 1.38657 1.09923 0.85777 0.81185 0.78153 0.77511 1.19636 1.20764 1.20171 1.61012 1.55078 1.06762 1.07424 1.22190 0.95820 0.88205 0.95429 0.96989 1.22586 0.96553 0.97864 0.97903 1.22700 1.00909 0.95884 0.94883 1.22302 0.95721 0.95886 0.96236 0.89916 1.21892 0.95431 0.96557 1.01006 1.21907 0.96230 0.97243 0.99978 1.22209 0.98018 0.95789 0.99829 1.22581 0.95950 0.96483 0.95584 0.90290 0.92328 0.95266 0.93791 0.92307 0.95423 0.92912 0.85771 0.94571 0.91655 0.89997 0.91727 0.90869 0.90773 0.91192 0.91463 0.93371 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.33 16 2 C -0.10 -5.08 5.45 30.59 0.17 -4.92 16 3 C 0.23 11.51 1.83 44.17 0.08 11.59 16 4 H 0.00 -0.26 7.71 -2.39 -0.02 -0.28 16 5 C -0.56 -31.00 8.26 25.60 0.21 -30.79 16 6 H 0.05 2.60 7.75 -2.91 -0.02 2.57 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -53.22 11.30 21.45 0.24 -52.98 16 9 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.67 -28.62 5.52 -469.27 -2.59 -31.22 16 14 C 0.09 3.57 2.59 45.70 0.12 3.69 16 15 H 0.01 0.55 6.71 -2.39 -0.02 0.53 16 16 C -0.11 -3.79 6.31 32.15 0.20 -3.59 16 17 C -0.11 -2.72 6.18 32.27 0.20 -2.52 16 18 C -0.08 -2.01 3.59 -9.49 -0.03 -2.05 16 19 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 20 C -0.11 -2.17 6.24 30.81 0.19 -1.97 16 21 C -0.12 -2.45 6.78 30.92 0.21 -2.24 16 22 C -0.12 -3.38 6.12 31.13 0.19 -3.19 16 23 C -0.09 -2.61 3.51 -9.34 -0.03 -2.65 16 24 H 0.08 2.39 7.64 -2.39 -0.02 2.37 16 25 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 3.26 5.97 -2.38 -0.01 3.25 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.33 13.73 7.81 -89.69 -0.70 13.02 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.62 7.97 -2.39 -0.02 1.60 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.50 7.28 -2.39 -0.02 1.49 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -59.16 311.80 2.60 -56.56 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.27 Total: 22.84 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 2.65 Total: -41.44 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.35 Total: -84.19 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -59.16 2.60 -56.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.452 kcal (2) G-P(sol) polarization free energy of solvation -59.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds