Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 H 1.09006 * 109.46939 * 179.23998 * 3 2 1 5 5 C 1.50703 * 109.47408 * 59.24706 * 3 2 1 6 6 H 1.08003 * 119.99818 * 240.00848 * 5 3 2 7 7 C 1.37868 * 120.00300 * 59.99378 * 5 3 2 8 8 N 1.31519 * 120.00168 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46782 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47230 * 120.00102 * 9 7 5 12 12 H 1.48503 * 109.47071 * 240.00619 * 9 7 5 13 13 N 1.46897 * 109.47371 * 299.24120 * 3 2 1 14 14 C 1.46896 * 111.00044 * 274.52549 * 13 3 2 15 15 C 1.53006 * 109.47085 * 174.80576 * 14 13 3 16 16 C 1.52997 * 115.55129 * 179.91111 * 15 14 13 17 17 C 1.52999 * 109.47176 * 325.58200 * 16 15 14 18 18 C 1.53004 * 117.49989 * 243.62320 * 17 16 15 19 19 C 1.52999 * 117.50360 * 174.99793 * 17 16 15 20 20 C 1.52996 * 117.49945 * 34.20295 * 15 14 13 21 21 C 1.52998 * 117.49710 * 325.57837 * 15 14 13 22 22 H 1.08998 * 109.47801 * 303.66535 * 1 2 3 23 23 H 1.09004 * 109.46925 * 63.67121 * 1 2 3 24 24 H 1.09003 * 109.46885 * 183.66103 * 1 2 3 25 25 H 1.09000 * 109.47825 * 239.99587 * 2 1 3 26 26 H 1.09001 * 109.47052 * 119.99278 * 2 1 3 27 27 H 0.96995 * 120.00370 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00451 * 150.56210 * 13 3 2 29 29 H 1.09001 * 109.46980 * 294.80105 * 14 13 3 30 30 H 1.08995 * 109.47755 * 54.80117 * 14 13 3 31 31 H 1.09003 * 109.47044 * 85.57820 * 16 15 14 32 32 H 1.08998 * 109.47190 * 205.57965 * 16 15 14 33 33 H 1.09007 * 115.55095 * 29.32434 * 17 16 15 34 34 H 1.09000 * 117.49426 * 359.97438 * 18 17 16 35 35 H 1.09001 * 117.49626 * 145.01494 * 18 17 16 36 36 H 1.08990 * 117.50461 * 214.97824 * 19 17 16 37 37 H 1.09000 * 117.49466 * 0.02562 * 19 17 16 38 38 H 1.09000 * 117.49914 * 359.97438 * 20 15 14 39 39 H 1.08999 * 117.49990 * 145.02315 * 20 15 14 40 40 H 1.09002 * 117.50223 * 214.98216 * 21 15 14 41 41 H 1.09005 * 117.49798 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5224 2.1584 1.2210 6 1 0.9026 3.0359 1.1103 7 6 1.8398 1.6929 2.4793 8 7 2.5946 0.6243 2.6142 9 14 1.1977 2.5798 3.9928 10 1 0.3770 3.7441 3.5732 11 1 0.3629 1.6496 4.7947 12 1 2.3423 3.0504 4.8135 13 7 1.5653 2.1297 -1.2085 14 6 2.4693 1.8881 -2.3408 15 6 1.8772 2.5091 -3.6076 16 6 2.7127 2.3399 -4.8781 17 6 4.1996 2.3842 -4.5204 18 6 5.0306 3.5332 -5.0951 19 6 5.2045 2.1149 -5.6422 20 6 1.0810 3.8064 -3.4528 21 6 0.3545 2.4945 -3.7563 22 1 -0.3634 0.5696 0.8553 23 1 -0.3633 0.4558 -0.9211 24 1 -0.3633 -1.0256 0.0656 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5137 0.8901 27 1 2.8182 0.2970 3.4994 28 1 1.4513 3.1182 -1.0412 29 1 3.4395 2.3399 -2.1340 30 1 2.5918 0.8147 -2.4855 31 1 2.4789 1.3815 -5.3417 32 1 2.4823 3.1461 -5.5745 33 1 4.4536 2.0297 -3.5214 34 1 4.5180 4.2572 -5.7284 35 1 5.8313 3.9348 -4.4742 36 1 6.1197 1.5836 -5.3813 37 1 4.8063 1.9066 -6.6353 38 1 0.9786 4.2173 -2.4484 39 1 1.1524 4.5397 -4.2561 40 1 -0.0521 2.3647 -4.7593 41 1 -0.2255 2.0429 -2.9514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = 36.130838 kcal Electronic energy + Delta-G solvation = -17422.199582 eV Core-core repulsion = 14917.115559 eV Total energy + Delta-G solvation = -2505.084023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.84576 -36.71276 -35.36882 -32.13414 -30.39134 -28.75637 -26.67866 -24.17150 -23.03483 -22.37755 -21.97022 -20.80796 -19.11817 -18.22069 -16.44414 -15.76518 -15.02382 -14.66362 -14.48447 -13.98036 -13.64915 -13.12205 -13.02902 -12.74615 -12.19947 -11.90230 -11.56478 -11.45241 -11.38283 -11.13901 -10.97848 -10.93034 -10.62098 -10.39863 -10.22530 -10.09584 -9.96528 -9.66217 -9.55069 -9.32138 -9.12533 -8.72446 -8.44198 -7.13917 -6.00240 -4.05352 3.29054 3.37406 3.41076 3.84035 4.20091 4.41504 4.66952 4.94249 5.00529 5.20315 5.24277 5.31997 5.36531 5.45581 5.58314 5.62719 5.75637 5.88884 6.00323 6.06007 6.11023 6.13052 6.31469 6.39446 6.46696 6.54529 6.55776 6.60969 6.69664 6.77698 6.91035 7.27416 7.37525 7.53625 7.77771 7.82410 7.88296 8.30438 8.44107 8.72379 9.04878 9.59504 11.05811 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.005822 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.604358 B = 4808.197161 C = 5004.213772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.685 5.685 14 C 0.097 3.903 15 C -0.120 4.120 16 C -0.047 4.047 17 C -0.149 4.149 18 C -0.181 4.181 19 C -0.187 4.187 20 C -0.176 4.176 21 C -0.160 4.160 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.085 0.915 27 H 0.259 0.741 28 H 0.329 0.671 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 3.252 -13.413 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.033 4.033 15 C -0.121 4.121 16 C -0.084 4.084 17 C -0.167 4.167 18 C -0.218 4.218 19 C -0.224 4.224 20 C -0.213 4.213 21 C -0.197 4.197 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.742 2.628 -13.430 13.705 hybrid contribution 0.534 0.971 1.124 1.579 sum 1.276 3.599 -12.306 12.885 Atomic orbital electron populations 1.21442 0.97560 0.97282 1.01295 1.21415 0.95013 0.98295 0.99283 1.19099 0.92979 0.91517 0.85540 0.98426 1.21218 1.31405 1.11852 0.90370 0.92359 1.24882 0.95100 0.95012 0.98879 1.69899 1.37095 1.22960 1.22852 0.86542 0.78630 0.79744 0.83101 1.19794 1.21026 1.21193 1.60678 1.49023 1.15518 1.06429 1.21347 0.93305 0.99246 0.89364 1.21506 0.93012 1.01343 0.96218 1.20654 0.91334 1.01254 0.95189 1.22525 0.92626 1.02821 0.98713 1.22981 1.03332 0.91494 1.04036 1.22947 1.01434 0.99392 0.98607 1.22986 1.05307 0.90741 1.02271 1.22946 0.94200 1.00691 1.01889 0.92577 0.93959 0.96903 0.97217 0.89708 0.93065 0.85317 0.95787 0.91605 0.91507 0.92177 0.86841 0.89178 0.89151 0.89091 0.89192 0.88635 0.90120 0.90413 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.15 0.35 -2.32 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.35 2.30 -68.86 -0.16 5.19 16 4 H 0.00 -0.05 7.85 -51.93 -0.41 -0.46 16 5 C -0.51 -13.62 7.23 -34.44 -0.25 -13.87 16 6 H 0.06 1.55 7.61 -52.48 -0.40 1.15 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.20 11.33 55.43 0.63 -24.57 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -14.10 4.46 -107.95 -0.48 -14.59 16 14 C 0.10 1.74 4.60 -3.82 -0.02 1.73 16 15 C -0.12 -1.79 2.47 -154.51 -0.38 -2.17 16 16 C -0.05 -0.59 5.68 -26.73 -0.15 -0.74 16 17 C -0.15 -1.88 5.41 -90.62 -0.49 -2.37 16 18 C -0.18 -2.03 10.18 -26.73 -0.27 -2.30 16 19 C -0.19 -2.01 10.25 -26.73 -0.27 -2.29 16 20 C -0.18 -2.51 9.54 -26.73 -0.26 -2.76 16 21 C -0.16 -2.34 9.64 -26.73 -0.26 -2.60 16 22 H 0.06 1.36 7.06 -51.93 -0.37 0.99 16 23 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.01 0.21 7.40 -51.93 -0.38 -0.17 16 26 H 0.08 2.30 6.09 -51.93 -0.32 1.98 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.76 6.36 -39.29 -0.25 6.51 16 29 H 0.02 0.45 6.46 -51.93 -0.34 0.11 16 30 H 0.07 1.25 7.35 -51.93 -0.38 0.87 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.70 7.63 -51.93 -0.40 0.30 16 33 H 0.11 1.62 5.67 -51.93 -0.29 1.33 16 34 H 0.09 0.93 8.03 -51.93 -0.42 0.52 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.47 6.45 -51.93 -0.34 1.13 16 39 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.11 1.84 7.59 -51.93 -0.39 1.45 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -26.96 318.85 -9.64 -36.60 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.17 Total: 7.11 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.40 Total: -25.50 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.15 Total: -39.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.96 -9.64 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.730 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds