Wall clock time and date at job start Sun Mar 29 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 H 1.09006 * 109.46939 * 179.23998 * 3 2 1 5 5 C 1.50703 * 109.47408 * 59.24706 * 3 2 1 6 6 H 1.08003 * 119.99818 * 240.00848 * 5 3 2 7 7 C 1.37868 * 120.00300 * 59.99378 * 5 3 2 8 8 N 1.31519 * 120.00168 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46782 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47230 * 120.00102 * 9 7 5 12 12 H 1.48503 * 109.47071 * 240.00619 * 9 7 5 13 13 N 1.46897 * 109.47371 * 299.24120 * 3 2 1 14 14 C 1.46896 * 111.00044 * 274.52549 * 13 3 2 15 15 C 1.53006 * 109.47085 * 174.80576 * 14 13 3 16 16 C 1.52997 * 115.55129 * 179.91111 * 15 14 13 17 17 C 1.52999 * 109.47176 * 325.58200 * 16 15 14 18 18 C 1.53004 * 117.49989 * 243.62320 * 17 16 15 19 19 C 1.52999 * 117.50360 * 174.99793 * 17 16 15 20 20 C 1.52996 * 117.49945 * 34.20295 * 15 14 13 21 21 C 1.52998 * 117.49710 * 325.57837 * 15 14 13 22 22 H 1.08998 * 109.47801 * 303.66535 * 1 2 3 23 23 H 1.09004 * 109.46925 * 63.67121 * 1 2 3 24 24 H 1.09003 * 109.46885 * 183.66103 * 1 2 3 25 25 H 1.09000 * 109.47825 * 239.99587 * 2 1 3 26 26 H 1.09001 * 109.47052 * 119.99278 * 2 1 3 27 27 H 0.96995 * 120.00370 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00451 * 150.56210 * 13 3 2 29 29 H 1.09001 * 109.46980 * 294.80105 * 14 13 3 30 30 H 1.08995 * 109.47755 * 54.80117 * 14 13 3 31 31 H 1.09003 * 109.47044 * 85.57820 * 16 15 14 32 32 H 1.08998 * 109.47190 * 205.57965 * 16 15 14 33 33 H 1.09007 * 115.55095 * 29.32434 * 17 16 15 34 34 H 1.09000 * 117.49426 * 359.97438 * 18 17 16 35 35 H 1.09001 * 117.49626 * 145.01494 * 18 17 16 36 36 H 1.08990 * 117.50461 * 214.97824 * 19 17 16 37 37 H 1.09000 * 117.49466 * 0.02562 * 19 17 16 38 38 H 1.09000 * 117.49914 * 359.97438 * 20 15 14 39 39 H 1.08999 * 117.49990 * 145.02315 * 20 15 14 40 40 H 1.09002 * 117.50223 * 214.98216 * 21 15 14 41 41 H 1.09005 * 117.49798 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5224 2.1584 1.2210 6 1 0.9026 3.0359 1.1103 7 6 1.8398 1.6929 2.4793 8 7 2.5946 0.6243 2.6142 9 14 1.1977 2.5798 3.9928 10 1 0.3770 3.7441 3.5732 11 1 0.3629 1.6496 4.7947 12 1 2.3423 3.0504 4.8135 13 7 1.5653 2.1297 -1.2085 14 6 2.4693 1.8881 -2.3408 15 6 1.8772 2.5091 -3.6076 16 6 2.7127 2.3399 -4.8781 17 6 4.1996 2.3842 -4.5204 18 6 5.0306 3.5332 -5.0951 19 6 5.2045 2.1149 -5.6422 20 6 1.0810 3.8064 -3.4528 21 6 0.3545 2.4945 -3.7563 22 1 -0.3634 0.5696 0.8553 23 1 -0.3633 0.4558 -0.9211 24 1 -0.3633 -1.0256 0.0656 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5137 0.8901 27 1 2.8182 0.2970 3.4994 28 1 1.4513 3.1182 -1.0412 29 1 3.4395 2.3399 -2.1340 30 1 2.5918 0.8147 -2.4855 31 1 2.4789 1.3815 -5.3417 32 1 2.4823 3.1461 -5.5745 33 1 4.4536 2.0297 -3.5214 34 1 4.5180 4.2572 -5.7284 35 1 5.8313 3.9348 -4.4742 36 1 6.1197 1.5836 -5.3813 37 1 4.8063 1.9066 -6.6353 38 1 0.9786 4.2173 -2.4484 39 1 1.1524 4.5397 -4.2561 40 1 -0.0521 2.3647 -4.7593 41 1 -0.2255 2.0429 -2.9514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:00 Heat of formation + Delta-G solvation = 23.349850 kcal Electronic energy + Delta-G solvation = -17422.753807 eV Core-core repulsion = 14917.115559 eV Total energy + Delta-G solvation = -2505.638249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05681 -37.96072 -36.96396 -34.07926 -32.24422 -29.83951 -28.54599 -25.91546 -24.89570 -23.28554 -23.06233 -21.80504 -21.02812 -19.56557 -18.28774 -17.08607 -16.68516 -16.18944 -15.85350 -15.47354 -15.00669 -14.71596 -14.34521 -14.21099 -13.94626 -13.61482 -13.06480 -12.90724 -12.78319 -12.43672 -12.38774 -12.32312 -12.18791 -12.13430 -11.91973 -11.62374 -11.34423 -11.09170 -11.01714 -10.77208 -10.67155 -10.53220 -10.26261 -8.91658 -8.09863 -6.21985 1.40108 1.42766 1.53451 2.42266 2.90453 3.07455 3.18986 3.63322 3.70873 4.00995 4.07871 4.13531 4.23577 4.32538 4.40588 4.60686 4.65772 4.78801 4.80198 4.84730 4.89103 4.94897 4.95631 5.02094 5.11931 5.18539 5.25538 5.30119 5.30334 5.37802 5.42473 5.46200 5.56820 5.58302 5.72267 5.83505 5.90878 6.28446 6.51988 6.82981 7.04902 7.47057 8.95669 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.005822 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.604358 B = 4808.197161 C = 5004.213772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.041 1.041 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.675 5.675 14 C 0.102 3.898 15 C -0.125 4.125 16 C -0.037 4.037 17 C -0.171 4.171 18 C -0.178 4.178 19 C -0.175 4.175 20 C -0.170 4.170 21 C -0.157 4.157 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.017 0.983 26 H 0.055 0.945 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.014 0.986 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 4.202 -15.000 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.024 1.024 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.306 5.306 14 C -0.028 4.028 15 C -0.125 4.125 16 C -0.074 4.074 17 C -0.189 4.189 18 C -0.215 4.215 19 C -0.212 4.212 20 C -0.207 4.207 21 C -0.194 4.194 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.068 3.585 -15.032 15.454 hybrid contribution 0.833 0.661 1.599 1.920 sum 0.765 4.246 -13.433 14.109 Atomic orbital electron populations 1.21295 0.95854 0.98256 1.00887 1.21288 0.96393 0.97695 0.98176 1.18891 0.90551 0.92265 0.86916 1.02387 1.21458 1.31224 1.11864 0.91314 0.92533 1.25633 0.95300 0.95675 1.01687 1.70034 1.38098 1.24206 1.23435 0.85555 0.78053 0.78763 0.79561 1.19043 1.20748 1.20942 1.60619 1.49261 1.15210 1.05508 1.21297 0.92742 0.98687 0.90028 1.21435 0.93611 1.01900 0.95561 1.20604 0.90600 1.02211 0.94032 1.22427 0.93337 1.04819 0.98296 1.23060 1.02821 0.91780 1.03807 1.23026 1.00696 0.98961 0.98499 1.23024 1.04393 0.90914 1.02330 1.22927 0.93413 1.00588 1.02453 0.94539 0.92841 0.95011 0.96461 0.92605 0.93063 0.85252 0.96773 0.92980 0.91055 0.90282 0.89464 0.87794 0.89376 0.88877 0.87577 0.90182 0.87657 0.87924 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.52 71.98 0.69 -4.05 16 2 C -0.10 -4.81 5.57 30.59 0.17 -4.64 16 3 C 0.22 11.33 2.30 44.17 0.10 11.43 16 4 H -0.04 -2.39 7.85 -2.38 -0.02 -2.41 16 5 C -0.52 -28.25 7.23 25.60 0.19 -28.06 16 6 H 0.06 3.03 7.61 -2.91 -0.02 3.01 16 7 C 0.02 0.88 5.30 84.65 0.45 1.33 16 8 N -0.92 -53.21 11.33 21.44 0.24 -52.97 16 9 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.67 -28.26 4.46 -495.45 -2.21 -30.47 16 14 C 0.10 3.72 4.60 86.31 0.40 4.12 16 15 C -0.12 -3.54 2.47 -52.18 -0.13 -3.67 16 16 C -0.04 -0.85 5.68 30.59 0.17 -0.68 16 17 C -0.17 -4.12 5.41 -10.79 -0.06 -4.18 16 18 C -0.18 -3.63 10.18 30.60 0.31 -3.32 16 19 C -0.17 -3.42 10.25 30.60 0.31 -3.10 16 20 C -0.17 -4.49 9.54 30.59 0.29 -4.20 16 21 C -0.16 -4.26 9.64 30.59 0.29 -3.97 16 22 H 0.04 1.75 7.06 -2.39 -0.02 1.73 16 23 H 0.05 2.24 7.74 -2.38 -0.02 2.22 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.02 0.79 7.40 -2.39 -0.02 0.78 16 26 H 0.06 3.11 6.09 -2.39 -0.01 3.10 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.33 13.73 6.36 -89.69 -0.57 13.16 16 29 H 0.01 0.55 6.46 -2.39 -0.02 0.54 16 30 H 0.05 2.03 7.35 -2.39 -0.02 2.01 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.55 7.63 -2.39 -0.02 1.53 16 33 H 0.09 2.56 5.67 -2.38 -0.01 2.55 16 34 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 2.38 6.45 -2.39 -0.02 2.37 16 39 H 0.11 2.30 8.05 -2.39 -0.02 2.28 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.82 7.59 -2.38 -0.02 2.80 16 Total: -1.00 -58.15 318.85 3.67 -54.48 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.42 Total: 26.25 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.19 Total: -42.99 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.96 Total: -83.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -58.15 3.67 -54.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.829 kcal (2) G-P(sol) polarization free energy of solvation -58.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds