Wall clock time and date at job start Sun Mar 29 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 H 1.08999 * 109.46998 * 54.34162 * 3 2 1 5 5 C 1.50698 * 109.47586 * 174.34079 * 3 2 1 6 6 H 1.08004 * 119.99812 * 119.99968 * 5 3 2 7 7 C 1.37871 * 120.00193 * 300.01016 * 5 3 2 8 8 N 1.31518 * 119.99716 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00241 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47498 * 59.99201 * 9 7 5 11 11 H 1.48505 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46648 * 299.99016 * 9 7 5 13 13 N 1.46903 * 109.47521 * 294.34724 * 3 2 1 14 14 C 1.46898 * 111.00232 * 157.78663 * 13 3 2 15 15 C 1.53000 * 109.47051 * 174.01785 * 14 13 3 16 16 C 1.52995 * 115.55226 * 179.91177 * 15 14 13 17 17 C 1.53005 * 109.46921 * 325.58326 * 16 15 14 18 18 C 1.53004 * 117.49531 * 243.61954 * 17 16 15 19 19 C 1.53000 * 117.49765 * 174.99976 * 17 16 15 20 20 C 1.53003 * 117.50021 * 34.19911 * 15 14 13 21 21 C 1.52998 * 60.00097 * 252.51325 * 20 15 14 22 22 H 1.09000 * 109.47725 * 58.36471 * 1 2 3 23 23 H 1.09002 * 109.47550 * 178.36612 * 1 2 3 24 24 H 1.08997 * 109.47317 * 298.36559 * 1 2 3 25 25 H 1.09010 * 109.46967 * 240.00654 * 2 1 3 26 26 H 1.08996 * 109.47365 * 120.00226 * 2 1 3 27 27 H 0.97003 * 119.99690 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99845 * 33.82751 * 13 3 2 29 29 H 1.08997 * 109.46654 * 294.01218 * 14 13 3 30 30 H 1.08996 * 109.47319 * 54.01572 * 14 13 3 31 31 H 1.09006 * 109.47205 * 85.57751 * 16 15 14 32 32 H 1.08999 * 109.47750 * 205.58036 * 16 15 14 33 33 H 1.08994 * 115.55010 * 29.32428 * 17 16 15 34 34 H 1.09000 * 117.49768 * 0.02562 * 18 17 16 35 35 H 1.09006 * 117.49642 * 145.01840 * 18 17 16 36 36 H 1.09002 * 117.49919 * 214.97348 * 19 17 16 37 37 H 1.09002 * 117.50407 * 0.02562 * 19 17 16 38 38 H 1.09001 * 117.49694 * 0.02562 * 20 15 14 39 39 H 1.09000 * 117.49922 * 145.02259 * 20 15 14 40 40 H 1.09005 * 117.50101 * 252.51017 * 21 20 15 41 41 H 1.09003 * 117.49922 * 107.49280 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9847 0.8350 5 6 3.5404 1.4449 0.1401 6 1 4.1540 1.8866 -0.6312 7 6 4.1298 0.8831 1.2527 8 7 3.3825 0.3456 2.1920 9 14 5.9897 0.8855 1.4260 10 1 6.4852 2.2853 1.4257 11 1 6.3688 0.2269 2.7019 12 1 6.5937 0.1463 0.2885 13 7 1.6649 2.0946 -1.2618 14 6 1.6487 3.5561 -1.1146 15 6 1.4015 4.2033 -2.4788 16 6 1.3555 5.7325 -2.4851 17 6 0.7322 6.2293 -1.1790 18 6 -0.5899 6.9935 -1.2731 19 6 0.7032 7.7403 -0.9400 20 6 0.4845 3.4644 -3.4556 21 6 1.9929 3.5093 -3.7075 22 1 -0.3634 0.5390 -0.8749 23 1 -0.3634 -1.0272 -0.0293 24 1 -0.3634 0.4882 0.9042 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.7972 -0.0493 2.9750 28 1 0.7748 1.7546 -1.5939 29 1 0.8532 3.8431 -0.4269 30 1 2.6080 3.8923 -0.7214 31 1 2.3678 6.1262 -2.5773 32 1 0.7545 6.0746 -3.3276 33 1 0.8812 5.5854 -0.3123 34 1 -1.0159 7.1419 -2.2654 35 1 -1.3113 6.8523 -0.4682 36 1 0.8327 8.0904 0.0841 37 1 1.1278 8.3805 -1.7134 38 1 0.0569 2.5175 -3.1262 39 1 -0.1520 4.0679 -4.1028 40 1 2.3489 4.1423 -4.5204 41 1 2.5580 2.5917 -3.5440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:02 Heat of formation + Delta-G solvation = 36.950830 kcal Electronic energy + Delta-G solvation = -17415.487606 eV Core-core repulsion = 14910.439140 eV Total energy + Delta-G solvation = -2505.048466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.80268 -36.69537 -35.39897 -32.08158 -30.76143 -28.68237 -26.78279 -24.44254 -22.46899 -22.34409 -21.93537 -20.76057 -19.50552 -18.16687 -16.30260 -15.77639 -15.22960 -14.73921 -14.35395 -13.90852 -13.78780 -13.23549 -13.00990 -12.58490 -12.28305 -11.99639 -11.55474 -11.42927 -11.27618 -11.25030 -10.96808 -10.94113 -10.77859 -10.61507 -10.21636 -9.98477 -9.92196 -9.65227 -9.57834 -9.47293 -9.14001 -8.93984 -8.30657 -7.12867 -5.93397 -3.97310 3.36202 3.40121 3.43794 3.88234 4.24167 4.47568 4.71049 4.98030 5.04206 5.21710 5.27573 5.36818 5.40980 5.49558 5.62282 5.66117 5.77572 5.91903 6.02872 6.09886 6.15852 6.16691 6.19147 6.22158 6.35793 6.42313 6.48664 6.52767 6.56311 6.77098 6.81626 6.88003 7.12161 7.23921 7.55693 7.82337 7.95601 8.36747 8.43286 8.82048 9.10757 9.67530 11.11999 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.006693 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.750109 B = 4182.402339 C = 4589.503581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.220 3.780 4 H -0.001 1.001 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.105 3.895 15 C -0.119 4.119 16 C -0.047 4.047 17 C -0.149 4.149 18 C -0.182 4.182 19 C -0.186 4.186 20 C -0.179 4.179 21 C -0.159 4.159 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.259 0.741 28 H 0.315 0.685 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 8.988 -7.531 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.318 5.318 14 C -0.025 4.025 15 C -0.120 4.120 16 C -0.084 4.084 17 C -0.166 4.166 18 C -0.219 4.219 19 C -0.223 4.223 20 C -0.216 4.216 21 C -0.196 4.196 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.804 8.868 -7.592 13.038 hybrid contribution 0.110 0.107 0.725 0.741 sum -5.694 8.975 -6.867 12.654 Atomic orbital electron populations 1.21878 0.99699 0.99461 0.99663 1.21738 0.91145 1.00379 1.02975 1.19101 0.95383 0.89981 0.84311 0.98376 1.21168 0.91289 1.36414 1.04151 0.92138 1.24953 0.98003 0.95702 0.95892 1.69868 1.34707 1.39604 1.09566 0.86622 0.85911 0.78115 0.77091 1.20460 1.21506 1.20333 1.60685 1.33984 1.03199 1.33960 1.21269 1.00237 0.89218 0.91767 1.21544 1.04881 0.92703 0.92846 1.20654 1.00149 0.92743 0.94899 1.22535 0.99840 0.93685 1.00588 1.22977 0.91194 1.05337 1.02435 1.22945 1.01942 0.95199 1.02247 1.22967 0.93463 1.02124 1.03025 1.22943 0.95557 1.03339 0.97779 0.94663 0.94467 0.93929 0.94109 0.88318 0.93090 0.86667 0.96176 0.90430 0.91383 0.92241 0.86736 0.89225 0.89228 0.89074 0.89189 0.89037 0.90155 0.90394 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.77 37.15 0.36 -2.57 16 2 C -0.12 -2.94 5.38 -26.74 -0.14 -3.08 16 3 C 0.22 5.46 2.02 -68.86 -0.14 5.32 16 4 H 0.00 -0.04 7.90 -51.93 -0.41 -0.45 16 5 C -0.49 -13.54 8.39 -34.44 -0.29 -13.83 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.65 11.29 55.43 0.63 -25.02 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.69 -14.37 5.09 -107.96 -0.55 -14.92 16 14 C 0.10 1.99 4.61 -3.82 -0.02 1.97 16 15 C -0.12 -1.85 2.47 -154.51 -0.38 -2.23 16 16 C -0.05 -0.62 5.68 -26.73 -0.15 -0.78 16 17 C -0.15 -1.96 5.42 -90.61 -0.49 -2.46 16 18 C -0.18 -2.09 10.18 -26.73 -0.27 -2.36 16 19 C -0.19 -2.11 10.25 -26.73 -0.27 -2.39 16 20 C -0.18 -2.57 9.54 -26.73 -0.26 -2.82 16 21 C -0.16 -2.43 9.64 -26.73 -0.26 -2.69 16 22 H 0.03 0.62 6.40 -51.93 -0.33 0.29 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.31 6.11 4.70 -39.29 -0.18 5.93 16 29 H 0.02 0.39 6.46 -51.93 -0.34 0.05 16 30 H 0.08 1.65 7.79 -51.93 -0.40 1.24 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.72 7.63 -51.93 -0.40 0.32 16 33 H 0.11 1.72 5.67 -51.93 -0.29 1.43 16 34 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.37 6.47 -51.93 -0.34 1.04 16 39 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 1.96 7.59 -51.93 -0.39 1.56 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -27.56 319.77 -9.69 -37.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.16 Total: 7.75 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.40 Total: -26.49 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.08 Total: -39.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.56 -9.69 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.202 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds