Wall clock time and date at job start Sun Mar 29 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 H 1.08999 * 109.46998 * 54.34162 * 3 2 1 5 5 C 1.50698 * 109.47586 * 174.34079 * 3 2 1 6 6 H 1.08004 * 119.99812 * 119.99968 * 5 3 2 7 7 C 1.37871 * 120.00193 * 300.01016 * 5 3 2 8 8 N 1.31518 * 119.99716 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00241 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47498 * 59.99201 * 9 7 5 11 11 H 1.48505 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46648 * 299.99016 * 9 7 5 13 13 N 1.46903 * 109.47521 * 294.34724 * 3 2 1 14 14 C 1.46898 * 111.00232 * 157.78663 * 13 3 2 15 15 C 1.53000 * 109.47051 * 174.01785 * 14 13 3 16 16 C 1.52995 * 115.55226 * 179.91177 * 15 14 13 17 17 C 1.53005 * 109.46921 * 325.58326 * 16 15 14 18 18 C 1.53004 * 117.49531 * 243.61954 * 17 16 15 19 19 C 1.53000 * 117.49765 * 174.99976 * 17 16 15 20 20 C 1.53003 * 117.50021 * 34.19911 * 15 14 13 21 21 C 1.52998 * 60.00097 * 252.51325 * 20 15 14 22 22 H 1.09000 * 109.47725 * 58.36471 * 1 2 3 23 23 H 1.09002 * 109.47550 * 178.36612 * 1 2 3 24 24 H 1.08997 * 109.47317 * 298.36559 * 1 2 3 25 25 H 1.09010 * 109.46967 * 240.00654 * 2 1 3 26 26 H 1.08996 * 109.47365 * 120.00226 * 2 1 3 27 27 H 0.97003 * 119.99690 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99845 * 33.82751 * 13 3 2 29 29 H 1.08997 * 109.46654 * 294.01218 * 14 13 3 30 30 H 1.08996 * 109.47319 * 54.01572 * 14 13 3 31 31 H 1.09006 * 109.47205 * 85.57751 * 16 15 14 32 32 H 1.08999 * 109.47750 * 205.58036 * 16 15 14 33 33 H 1.08994 * 115.55010 * 29.32428 * 17 16 15 34 34 H 1.09000 * 117.49768 * 0.02562 * 18 17 16 35 35 H 1.09006 * 117.49642 * 145.01840 * 18 17 16 36 36 H 1.09002 * 117.49919 * 214.97348 * 19 17 16 37 37 H 1.09002 * 117.50407 * 0.02562 * 19 17 16 38 38 H 1.09001 * 117.49694 * 0.02562 * 20 15 14 39 39 H 1.09000 * 117.49922 * 145.02259 * 20 15 14 40 40 H 1.09005 * 117.50101 * 252.51017 * 21 20 15 41 41 H 1.09003 * 117.49922 * 107.49280 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9847 0.8350 5 6 3.5404 1.4449 0.1401 6 1 4.1540 1.8866 -0.6312 7 6 4.1298 0.8831 1.2527 8 7 3.3825 0.3456 2.1920 9 14 5.9897 0.8855 1.4260 10 1 6.4852 2.2853 1.4257 11 1 6.3688 0.2269 2.7019 12 1 6.5937 0.1463 0.2885 13 7 1.6649 2.0946 -1.2618 14 6 1.6487 3.5561 -1.1146 15 6 1.4015 4.2033 -2.4788 16 6 1.3555 5.7325 -2.4851 17 6 0.7322 6.2293 -1.1790 18 6 -0.5899 6.9935 -1.2731 19 6 0.7032 7.7403 -0.9400 20 6 0.4845 3.4644 -3.4556 21 6 1.9929 3.5093 -3.7075 22 1 -0.3634 0.5390 -0.8749 23 1 -0.3634 -1.0272 -0.0293 24 1 -0.3634 0.4882 0.9042 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.7972 -0.0493 2.9750 28 1 0.7748 1.7546 -1.5939 29 1 0.8532 3.8431 -0.4269 30 1 2.6080 3.8923 -0.7214 31 1 2.3678 6.1262 -2.5773 32 1 0.7545 6.0746 -3.3276 33 1 0.8812 5.5854 -0.3123 34 1 -1.0159 7.1419 -2.2654 35 1 -1.3113 6.8523 -0.4682 36 1 0.8327 8.0904 0.0841 37 1 1.1278 8.3805 -1.7134 38 1 0.0569 2.5175 -3.1262 39 1 -0.1520 4.0679 -4.1028 40 1 2.3489 4.1423 -4.5204 41 1 2.5580 2.5917 -3.5440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:02 Heat of formation + Delta-G solvation = 23.234113 kcal Electronic energy + Delta-G solvation = -17416.082408 eV Core-core repulsion = 14910.439140 eV Total energy + Delta-G solvation = -2505.643267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06001 -37.98544 -36.96724 -34.12745 -32.47804 -29.79030 -28.71554 -26.15850 -24.28718 -23.28927 -23.06286 -21.80635 -21.43774 -19.45176 -18.38466 -17.11198 -16.64223 -16.50785 -15.70810 -15.65160 -14.95336 -14.64957 -14.54700 -14.05470 -13.80918 -13.65009 -13.21275 -12.98110 -12.79231 -12.57118 -12.46400 -12.33109 -12.23748 -12.13225 -11.95940 -11.59405 -11.49460 -11.11881 -11.02980 -10.97961 -10.64713 -10.44355 -10.25890 -8.93627 -8.07022 -6.18948 1.40528 1.41908 1.49733 2.43276 2.90804 3.07158 3.17896 3.61888 3.70322 4.00231 4.08352 4.13772 4.25123 4.31775 4.42432 4.48885 4.55458 4.60446 4.70744 4.80172 4.86952 4.93518 4.94903 5.01707 5.07724 5.10840 5.19351 5.24595 5.28374 5.31843 5.35823 5.38572 5.44493 5.55769 5.60922 5.75272 5.89902 6.36803 6.51391 6.94753 7.02514 7.49953 8.96135 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.006693 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.750109 B = 4182.402339 C = 4589.503581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.510 4.510 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.111 3.889 15 C -0.127 4.127 16 C -0.037 4.037 17 C -0.173 4.173 18 C -0.172 4.172 19 C -0.178 4.178 20 C -0.162 4.162 21 C -0.162 4.162 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.016 0.984 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 10.015 -9.179 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.117 3.883 4 H -0.020 1.020 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.314 5.314 14 C -0.018 4.018 15 C -0.128 4.128 16 C -0.075 4.075 17 C -0.191 4.191 18 C -0.209 4.209 19 C -0.215 4.215 20 C -0.199 4.199 21 C -0.199 4.199 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.554 9.900 -9.252 15.052 hybrid contribution 0.330 -0.206 1.258 1.316 sum -6.224 9.694 -7.995 14.023 Atomic orbital electron populations 1.21745 0.96346 1.01244 1.00263 1.21562 0.94168 0.98907 1.01145 1.18883 0.93998 0.90703 0.84696 1.01986 1.21413 0.92799 1.36543 1.04121 0.93388 1.25676 1.02257 0.95351 0.95588 1.69999 1.36273 1.39968 1.09846 0.85668 0.80835 0.78189 0.77259 1.20092 1.20821 1.19803 1.60588 1.34723 1.04371 1.31736 1.21149 0.98360 0.88032 0.94278 1.21461 1.06412 0.94176 0.90745 1.20601 1.00537 0.90699 0.95649 1.22416 1.02215 0.94711 0.99747 1.23061 0.90649 1.03779 1.03385 1.23028 1.01745 0.93813 1.02905 1.23032 0.93078 1.01763 1.02015 1.22912 0.96266 1.02542 0.98209 0.92633 0.92176 0.94603 0.94501 0.91428 0.93075 0.85434 0.96577 0.93707 0.91606 0.89958 0.89597 0.87582 0.89138 0.88984 0.87670 0.89823 0.87305 0.88039 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.77 71.98 0.70 -4.62 16 2 C -0.12 -5.75 5.38 30.59 0.16 -5.59 16 3 C 0.23 11.61 2.02 44.17 0.09 11.70 16 4 H -0.04 -2.16 7.90 -2.39 -0.02 -2.18 16 5 C -0.51 -29.08 8.39 25.60 0.21 -28.86 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.53 5.29 84.65 0.45 0.97 16 8 N -0.92 -53.97 11.29 21.45 0.24 -53.73 16 9 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.68 -29.14 5.09 -495.46 -2.52 -31.66 16 14 C 0.11 4.35 4.61 86.30 0.40 4.75 16 15 C -0.13 -3.83 2.47 -52.18 -0.13 -3.96 16 16 C -0.04 -0.93 5.68 30.59 0.17 -0.75 16 17 C -0.17 -4.41 5.42 -10.79 -0.06 -4.47 16 18 C -0.17 -3.54 10.18 30.60 0.31 -3.23 16 19 C -0.18 -3.70 10.25 30.59 0.31 -3.39 16 20 C -0.16 -4.25 9.54 30.59 0.29 -3.96 16 21 C -0.16 -4.71 9.64 30.59 0.29 -4.42 16 22 H 0.05 1.88 6.40 -2.39 -0.02 1.87 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.07 3.70 5.94 -2.39 -0.01 3.69 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.33 12.57 4.70 -89.69 -0.42 12.15 16 29 H 0.02 0.65 6.46 -2.39 -0.02 0.63 16 30 H 0.04 2.02 7.79 -2.39 -0.02 2.00 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 1.68 7.63 -2.39 -0.02 1.66 16 33 H 0.09 2.68 5.67 -2.39 -0.01 2.66 16 34 H 0.11 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.33 6.47 -2.39 -0.02 2.32 16 39 H 0.11 2.29 8.05 -2.39 -0.02 2.27 16 40 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.08 2.92 7.59 -2.39 -0.02 2.90 16 Total: -1.00 -60.80 319.77 3.53 -57.27 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.56 Total: 26.85 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 3.22 Total: -45.82 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.28 Total: -85.39 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -60.80 3.53 -57.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.506 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds