Wall clock time and date at job start Sun Mar 29 2020 22:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47348 * 2 1 4 4 H 1.08998 * 109.47340 * 304.99983 * 3 2 1 5 5 C 1.50697 * 109.47342 * 184.99818 * 3 2 1 6 6 H 1.08001 * 120.00041 * 239.99688 * 5 3 2 7 7 C 1.37873 * 120.00031 * 59.99792 * 5 3 2 8 8 N 1.31510 * 120.00054 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00059 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46943 * 90.00327 * 9 7 5 11 11 H 1.48497 * 109.47343 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47387 * 330.00107 * 9 7 5 13 13 N 1.46908 * 109.47268 * 64.99659 * 3 2 1 14 14 C 1.46591 * 110.99493 * 67.26565 * 13 3 2 15 15 C 1.51684 * 110.60320 * 186.16989 * 14 13 3 16 16 C 1.49576 * 115.02073 * 315.17893 * 15 14 13 17 17 H 1.09002 * 105.93698 * 149.13834 * 16 15 14 18 18 C 1.52842 * 113.79307 * 264.57585 * 16 15 14 19 19 C 1.53997 * 106.51616 * 134.94954 * 18 16 15 20 20 C 1.54157 * 105.81709 * 16.90824 * 19 18 16 21 21 C 1.51993 * 117.29594 * 32.46659 * 16 15 14 22 22 H 1.09007 * 110.75709 * 89.03998 * 21 16 15 23 23 C 1.46698 * 110.99947 * 190.00231 * 13 3 2 24 24 H 1.08999 * 109.47143 * 60.00030 * 1 2 3 25 25 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47600 * 300.00010 * 1 2 3 27 27 H 1.08996 * 109.47585 * 239.99699 * 2 1 3 28 28 H 1.09006 * 109.46840 * 119.99732 * 2 1 3 29 29 H 0.97003 * 120.00009 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.25110 * 65.88670 * 14 13 3 31 31 H 1.08997 * 109.25114 * 306.45526 * 14 13 3 32 32 H 1.08997 * 108.37008 * 193.73748 * 15 14 13 33 33 H 1.09007 * 108.37192 * 76.61590 * 15 14 13 34 34 H 1.08993 * 110.04984 * 254.21455 * 18 16 15 35 35 H 1.09003 * 110.04943 * 15.63503 * 18 16 15 36 36 H 1.08997 * 110.18421 * 135.99634 * 19 18 16 37 37 H 1.09004 * 110.18122 * 257.82500 * 19 18 16 38 38 H 1.09000 * 110.41203 * 89.17643 * 20 19 18 39 39 H 1.08999 * 110.41649 * 211.51738 * 20 19 18 40 40 H 1.08999 * 109.42252 * 49.50390 * 23 13 3 41 41 H 1.09002 * 109.41956 * 289.69583 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8783 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5548 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5570 2.0737 -0.6901 13 7 1.6513 2.0993 1.2552 14 6 2.3544 1.5075 2.3973 15 6 1.8372 2.0861 3.7006 16 6 1.6631 3.5717 3.7083 17 1 0.8334 3.7723 4.3862 18 6 2.8569 4.3295 4.2885 19 6 3.1346 5.5057 3.3342 20 6 1.8614 5.6628 2.4793 21 6 1.2675 4.2339 2.3986 22 1 0.1829 4.2703 2.2963 23 6 1.9120 3.5417 1.1964 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8294 -0.0612 -2.9498 30 1 3.4207 1.7156 2.3100 31 1 2.1979 0.4288 2.3960 32 1 2.5328 1.8175 4.4957 33 1 0.8742 1.6261 3.9226 34 1 2.6141 4.7043 5.2828 35 1 3.7268 3.6745 4.3386 36 1 3.3198 6.4164 3.9037 37 1 3.9896 5.2794 2.6972 38 1 1.1586 6.3399 2.9649 39 1 2.1144 6.0282 1.4841 40 1 1.4927 3.9486 0.2763 41 1 2.9879 3.7165 1.2115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:28 Heat of formation + Delta-G solvation = -20.990861 kcal Electronic energy + Delta-G solvation = -18348.686082 eV Core-core repulsion = 15841.125076 eV Total energy + Delta-G solvation = -2507.561006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52264 -36.35048 -33.06157 -31.77492 -31.19405 -28.98833 -27.10592 -26.14995 -23.59641 -22.35452 -21.68388 -20.17768 -18.93825 -17.88456 -16.05557 -15.74730 -15.20345 -14.59906 -14.36914 -13.94497 -13.22631 -13.07782 -12.73185 -12.58742 -12.19058 -11.89089 -11.45967 -11.36305 -11.17358 -11.07250 -10.87424 -10.81781 -10.59123 -10.43452 -10.25339 -10.16750 -10.00029 -9.73035 -9.58716 -9.49459 -9.15541 -8.96095 -8.32543 -7.01735 -5.94933 -4.08282 3.27664 3.35061 3.37737 4.41791 4.77334 4.89170 4.99937 5.27439 5.33165 5.49215 5.65005 5.73001 5.78339 5.94054 6.02003 6.04850 6.14288 6.19633 6.27902 6.28286 6.40928 6.48686 6.51762 6.54778 6.57651 6.63637 6.72598 6.74650 6.88919 6.91840 7.03137 7.18614 7.24804 7.43265 7.66608 7.81399 8.06634 8.22219 8.41009 8.55511 9.03186 9.59108 11.03788 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.009017 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.423866 B = 3104.630501 C = 3738.372016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.064 3.936 15 C -0.101 4.101 16 C -0.073 4.073 17 H 0.043 0.957 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.076 4.076 22 H 0.072 0.928 23 C 0.072 3.928 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 6.176 9.521 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.065 4.065 15 C -0.139 4.139 16 C -0.092 4.092 17 H 0.061 0.939 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.095 4.095 22 H 0.090 0.910 23 C -0.057 4.057 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.453 6.005 9.411 11.686 hybrid contribution 1.989 0.064 -0.260 2.007 sum -1.464 6.068 9.152 11.078 Atomic orbital electron populations 1.21701 0.98914 0.98309 1.00557 1.21585 0.92216 0.99262 1.01793 1.19281 0.92982 0.91198 0.85864 0.94563 1.21770 0.92970 1.37836 1.05360 0.92532 1.24907 0.97661 0.95169 0.95721 1.69877 1.34672 1.38463 1.09446 0.86712 0.86456 0.78344 0.77184 1.20740 1.21241 1.20113 1.62516 1.56071 1.01877 1.04790 1.21547 0.96489 0.98780 0.89691 1.20609 1.00834 0.94249 0.98254 1.20198 0.97142 0.95068 0.96825 0.93853 1.22027 0.98504 0.96948 0.97987 1.22120 0.98432 0.97638 0.97786 1.22442 0.96618 0.97052 0.99795 1.21522 0.99503 0.93442 0.95028 0.90961 1.21851 0.98146 0.89881 0.95856 0.94314 0.95718 0.93337 0.89072 0.94978 0.92972 0.94769 0.91418 0.92950 0.92789 0.92552 0.92044 0.92548 0.91805 0.92419 0.91580 0.92265 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.15 0.36 -2.48 16 2 C -0.11 -2.63 5.19 -26.74 -0.14 -2.77 16 3 C 0.21 5.25 1.70 -68.86 -0.12 5.14 16 4 H 0.04 1.00 7.92 -51.93 -0.41 0.59 16 5 C -0.54 -14.42 7.28 -34.44 -0.25 -14.67 16 6 H 0.06 1.53 5.75 -52.49 -0.30 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.33 16 9 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.53 -11.20 4.10 -229.33 -0.94 -12.14 16 14 C 0.06 1.26 4.79 -4.66 -0.02 1.24 16 15 C -0.10 -1.64 5.49 -29.09 -0.16 -1.80 16 16 C -0.07 -1.10 2.45 -92.91 -0.23 -1.33 16 17 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 18 C -0.12 -1.59 6.38 -26.29 -0.17 -1.75 16 19 C -0.12 -1.63 6.50 -25.61 -0.17 -1.79 16 20 C -0.12 -1.65 6.24 -25.09 -0.16 -1.81 16 21 C -0.08 -1.21 3.34 -90.12 -0.30 -1.51 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 C 0.07 1.39 4.20 -3.95 -0.02 1.38 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.03 0.75 6.26 -51.93 -0.33 0.43 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.03 0.74 6.20 -51.93 -0.32 0.42 16 31 H 0.07 1.39 6.15 -51.93 -0.32 1.07 16 32 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 33 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 40 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 41 H 0.03 0.73 6.86 -51.93 -0.36 0.38 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -26.97 300.32 -9.56 -36.53 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.29 Total: -0.37 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.46 Total: -20.42 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.32 Total: -36.46 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.97 -9.56 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.541 kcal (2) G-P(sol) polarization free energy of solvation -26.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds