Wall clock time and date at job start Sun Mar 29 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47348 * 2 1 4 4 H 1.08998 * 109.47340 * 304.99983 * 3 2 1 5 5 C 1.50697 * 109.47342 * 184.99818 * 3 2 1 6 6 H 1.08001 * 120.00041 * 239.99688 * 5 3 2 7 7 C 1.37873 * 120.00031 * 59.99792 * 5 3 2 8 8 N 1.31510 * 120.00054 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00059 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46943 * 90.00327 * 9 7 5 11 11 H 1.48497 * 109.47343 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47387 * 330.00107 * 9 7 5 13 13 N 1.46908 * 109.47268 * 64.99659 * 3 2 1 14 14 C 1.46591 * 110.99493 * 67.26565 * 13 3 2 15 15 C 1.51684 * 110.60320 * 186.16989 * 14 13 3 16 16 C 1.49576 * 115.02073 * 315.17893 * 15 14 13 17 17 H 1.09002 * 105.93698 * 149.13834 * 16 15 14 18 18 C 1.52842 * 113.79307 * 264.57585 * 16 15 14 19 19 C 1.53997 * 106.51616 * 134.94954 * 18 16 15 20 20 C 1.54157 * 105.81709 * 16.90824 * 19 18 16 21 21 C 1.51993 * 117.29594 * 32.46659 * 16 15 14 22 22 H 1.09007 * 110.75709 * 89.03998 * 21 16 15 23 23 C 1.46698 * 110.99947 * 190.00231 * 13 3 2 24 24 H 1.08999 * 109.47143 * 60.00030 * 1 2 3 25 25 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47600 * 300.00010 * 1 2 3 27 27 H 1.08996 * 109.47585 * 239.99699 * 2 1 3 28 28 H 1.09006 * 109.46840 * 119.99732 * 2 1 3 29 29 H 0.97003 * 120.00009 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.25110 * 65.88670 * 14 13 3 31 31 H 1.08997 * 109.25114 * 306.45526 * 14 13 3 32 32 H 1.08997 * 108.37008 * 193.73748 * 15 14 13 33 33 H 1.09007 * 108.37192 * 76.61590 * 15 14 13 34 34 H 1.08993 * 110.04984 * 254.21455 * 18 16 15 35 35 H 1.09003 * 110.04943 * 15.63503 * 18 16 15 36 36 H 1.08997 * 110.18421 * 135.99634 * 19 18 16 37 37 H 1.09004 * 110.18122 * 257.82500 * 19 18 16 38 38 H 1.09000 * 110.41203 * 89.17643 * 20 19 18 39 39 H 1.08999 * 110.41649 * 211.51738 * 20 19 18 40 40 H 1.08999 * 109.42252 * 49.50390 * 23 13 3 41 41 H 1.09002 * 109.41956 * 289.69583 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8783 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5548 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5570 2.0737 -0.6901 13 7 1.6513 2.0993 1.2552 14 6 2.3544 1.5075 2.3973 15 6 1.8372 2.0861 3.7006 16 6 1.6631 3.5717 3.7083 17 1 0.8334 3.7723 4.3862 18 6 2.8569 4.3295 4.2885 19 6 3.1346 5.5057 3.3342 20 6 1.8614 5.6628 2.4793 21 6 1.2675 4.2339 2.3986 22 1 0.1829 4.2703 2.2963 23 6 1.9120 3.5417 1.1964 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8294 -0.0612 -2.9498 30 1 3.4207 1.7156 2.3100 31 1 2.1979 0.4288 2.3960 32 1 2.5328 1.8175 4.4957 33 1 0.8742 1.6261 3.9226 34 1 2.6141 4.7043 5.2828 35 1 3.7268 3.6745 4.3386 36 1 3.3198 6.4164 3.9037 37 1 3.9896 5.2794 2.6972 38 1 1.1586 6.3399 2.9649 39 1 2.1144 6.0282 1.4841 40 1 1.4927 3.9486 0.2763 41 1 2.9879 3.7165 1.2115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:27 Heat of formation + Delta-G solvation = -35.046020 kcal Electronic energy + Delta-G solvation = -18349.295559 eV Core-core repulsion = 15841.125076 eV Total energy + Delta-G solvation = -2508.170484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90507 -37.98891 -34.82802 -33.40952 -32.88219 -30.38601 -28.56279 -27.89300 -25.38004 -23.89651 -23.28468 -21.39202 -20.69746 -19.40113 -17.93759 -17.15095 -16.87543 -16.26451 -15.71757 -15.52584 -15.01178 -14.58681 -14.41295 -13.99024 -13.56908 -13.50850 -13.14760 -12.99057 -12.86076 -12.84254 -12.43632 -12.40179 -12.06703 -11.94551 -11.78349 -11.63975 -11.49554 -11.31904 -11.14582 -10.99336 -10.93643 -10.61180 -10.41976 -8.86532 -8.02312 -6.25463 1.34438 1.36272 1.44849 2.38733 3.14520 3.39861 3.71578 3.82795 3.92541 4.30794 4.40369 4.43092 4.54855 4.60073 4.63077 4.74077 4.79375 4.81156 4.90717 4.92323 4.99282 5.02539 5.11656 5.14088 5.19086 5.24189 5.26549 5.36430 5.42428 5.48460 5.49772 5.54207 5.55695 5.63657 5.68755 5.80741 6.10148 6.23061 6.43529 6.73702 6.97785 7.45313 8.91757 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022862 B = 0.009017 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.423866 B = 3104.630501 C = 3738.372016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.525 5.525 14 C 0.068 3.932 15 C -0.096 4.096 16 C -0.079 4.079 17 H 0.066 0.934 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.073 4.073 22 H 0.078 0.922 23 C 0.075 3.925 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.008 0.992 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 7.053 11.612 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.061 4.061 15 C -0.134 4.134 16 C -0.098 4.098 17 H 0.085 0.915 18 C -0.152 4.152 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.092 4.092 22 H 0.097 0.903 23 C -0.054 4.054 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -3.835 6.888 11.515 13.955 hybrid contribution 2.101 -0.206 -0.935 2.309 sum -1.734 6.682 10.580 12.633 Atomic orbital electron populations 1.21555 0.96259 0.99768 1.00624 1.21426 0.94551 0.98185 1.00189 1.19061 0.91727 0.91607 0.86491 0.98203 1.21974 0.94183 1.37487 1.05136 0.93464 1.25600 1.01670 0.95046 0.95561 1.70000 1.36156 1.39044 1.09802 0.85783 0.81677 0.78340 0.77200 1.20157 1.20777 1.19994 1.62509 1.55820 1.02718 1.03762 1.21546 0.95029 0.98421 0.91086 1.20571 1.01532 0.95241 0.96061 1.20236 0.98793 0.94159 0.96633 0.91533 1.22036 0.97414 0.96564 0.99182 1.22129 0.97386 0.98810 0.97674 1.22424 0.97235 0.95890 0.99883 1.21521 0.99563 0.94562 0.93566 0.90348 1.21873 0.96971 0.89113 0.97437 0.94968 0.93547 0.92422 0.92032 0.95072 0.92957 0.97361 0.92516 0.91155 0.91835 0.89912 0.93111 0.90046 0.93968 0.89762 0.92417 0.93875 0.97119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.80 71.98 0.71 -4.40 16 2 C -0.10 -5.12 5.19 30.59 0.16 -4.96 16 3 C 0.22 11.16 1.70 44.17 0.08 11.24 16 4 H 0.00 0.00 7.92 -2.39 -0.02 -0.02 16 5 C -0.55 -30.31 7.28 25.60 0.19 -30.12 16 6 H 0.05 2.65 5.75 -2.91 -0.02 2.63 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -52.71 11.29 21.45 0.24 -52.47 16 9 Si 0.94 44.32 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.52 -22.57 4.10 -879.46 -3.61 -26.18 16 14 C 0.07 2.69 4.79 85.93 0.41 3.10 16 15 C -0.10 -2.91 5.49 29.07 0.16 -2.75 16 16 C -0.08 -2.16 2.45 -12.27 -0.03 -2.19 16 17 H 0.07 1.57 8.03 -2.39 -0.02 1.55 16 18 C -0.11 -2.76 6.38 30.88 0.20 -2.56 16 19 C -0.12 -2.98 6.50 31.32 0.20 -2.78 16 20 C -0.12 -2.92 6.24 31.65 0.20 -2.72 16 21 C -0.07 -2.20 3.34 -10.47 -0.03 -2.23 16 22 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 23 C 0.07 2.97 4.20 86.33 0.36 3.33 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.23 7.75 -2.38 -0.02 2.22 16 27 H 0.06 3.38 5.95 -2.39 -0.01 3.37 16 28 H 0.03 1.48 6.26 -2.38 -0.01 1.47 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.01 0.36 6.20 -2.39 -0.01 0.35 16 31 H 0.06 2.34 6.15 -2.39 -0.01 2.33 16 32 H 0.07 1.88 7.68 -2.39 -0.02 1.87 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.33 7.70 -2.39 -0.02 1.31 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.19 8.07 -2.38 -0.02 1.17 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.53 7.84 -2.39 -0.02 1.52 16 40 H 0.04 1.80 7.92 -2.39 -0.02 1.78 16 41 H 0.01 0.47 6.86 -2.39 -0.02 0.45 16 Total: -1.00 -59.22 300.32 2.67 -56.54 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.97 Total: 11.19 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.04 Total: -35.43 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.37 Total: -78.65 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -59.22 2.67 -56.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.498 kcal (2) G-P(sol) polarization free energy of solvation -59.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds