Wall clock time and date at job start Sun Mar 29 2020 22:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 H 1.09003 * 109.47041 * 302.26535 * 3 2 1 5 5 C 1.50698 * 109.47053 * 182.26657 * 3 2 1 6 6 H 1.08003 * 120.00040 * 239.99907 * 5 3 2 7 7 C 1.37876 * 120.00475 * 59.99676 * 5 3 2 8 8 N 1.31517 * 119.99455 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00581 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46927 * 60.00096 * 9 7 5 11 11 H 1.48500 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46861 * 300.00667 * 9 7 5 13 13 N 1.46898 * 109.47168 * 62.26726 * 3 2 1 14 14 C 1.46336 * 111.00069 * 190.71966 * 13 3 2 15 15 C 1.53858 * 111.73228 * 178.33736 * 14 13 3 16 16 C 1.51613 * 106.95725 * 56.30461 * 15 14 13 17 17 H 1.09002 * 109.76603 * 56.45967 * 16 15 14 18 18 C 1.52374 * 117.08725 * 182.44354 * 16 15 14 19 19 C 1.55041 * 105.20699 * 146.74838 * 18 16 15 20 20 C 1.55396 * 106.35969 * 356.28957 * 19 18 16 21 21 C 1.53131 * 102.82828 * 335.94417 * 20 19 18 22 22 H 1.08990 * 110.93528 * 284.59867 * 21 20 19 23 23 C 1.47673 * 110.93705 * 63.31313 * 13 3 2 24 24 H 1.09004 * 109.47324 * 174.63984 * 1 2 3 25 25 H 1.09007 * 109.47450 * 294.63663 * 1 2 3 26 26 H 1.08995 * 109.47397 * 54.63925 * 1 2 3 27 27 H 1.08997 * 109.47447 * 240.00094 * 2 1 3 28 28 H 1.08998 * 109.47194 * 119.99633 * 2 1 3 29 29 H 0.97004 * 120.00128 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.01365 * 57.78690 * 14 13 3 31 31 H 1.08998 * 109.01857 * 298.89684 * 14 13 3 32 32 H 1.08998 * 109.95674 * 175.66338 * 15 14 13 33 33 H 1.09001 * 109.95711 * 296.94473 * 15 14 13 34 34 H 1.09000 * 110.28943 * 265.70878 * 18 16 15 35 35 H 1.08996 * 110.29351 * 27.82649 * 18 16 15 36 36 H 1.08996 * 110.09611 * 237.04950 * 19 18 16 37 37 H 1.09002 * 110.09456 * 115.52352 * 19 18 16 38 38 H 1.09001 * 110.73545 * 217.61633 * 20 19 18 39 39 H 1.09000 * 110.89960 * 94.35730 * 20 19 18 40 40 H 1.09006 * 109.99716 * 65.71591 * 23 13 3 41 41 H 1.08997 * 109.94269 * 304.44965 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6437 1.9680 -0.8690 5 6 3.5458 1.4430 -0.0562 6 1 4.1158 1.9001 0.7392 7 6 4.1962 0.8598 -1.1229 8 7 3.5021 0.3036 -2.0918 9 14 6.0628 0.8610 -1.1930 10 1 6.6030 0.1456 -0.0090 11 1 6.5121 0.1775 -2.4324 12 1 6.5572 2.2612 -1.1933 13 7 1.5955 2.1190 1.2259 14 6 1.8428 3.5593 1.1492 15 6 1.3459 4.2905 2.4084 16 6 2.0317 3.6429 3.5954 17 1 3.1131 3.6870 3.4655 18 6 1.6573 4.1588 4.9794 19 6 1.7485 2.9237 5.9122 20 6 2.0843 1.7107 5.0008 21 6 1.5663 2.1605 3.6317 22 1 0.4788 2.1018 3.5883 23 6 2.1790 1.4799 2.4224 24 1 -0.3634 -1.0232 -0.0960 25 1 -0.3634 0.4284 0.9342 26 1 -0.3634 0.5947 -0.8380 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9595 -0.1064 -2.8425 30 1 1.3270 3.9623 0.2777 31 1 2.9136 3.7304 1.0385 32 1 1.6124 5.3460 2.3552 33 1 0.2650 4.1828 2.4990 34 1 2.3607 4.9276 5.2993 35 1 0.6414 4.5538 4.9736 36 1 0.7946 2.7621 6.4140 37 1 2.5389 3.0684 6.6489 38 1 1.5584 0.8174 5.3380 39 1 3.1595 1.5348 4.9681 40 1 3.2605 1.6158 2.4277 41 1 1.9369 0.4172 2.4317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:30 Heat of formation + Delta-G solvation = -20.853386 kcal Electronic energy + Delta-G solvation = -18239.741511 eV Core-core repulsion = 15732.186466 eV Total energy + Delta-G solvation = -2507.555045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47811 -36.33701 -33.26484 -31.71244 -30.67061 -29.13974 -27.07333 -26.05235 -23.28496 -22.52253 -20.89976 -19.87300 -19.41368 -18.90736 -16.34082 -15.29367 -14.82655 -14.45545 -14.29417 -13.70989 -13.44802 -13.13015 -13.01714 -12.62180 -12.16074 -11.86746 -11.67206 -11.47481 -11.12903 -11.02928 -10.87398 -10.68094 -10.58226 -10.40452 -10.24239 -10.12414 -10.06719 -9.75699 -9.69088 -9.57396 -9.09607 -9.00994 -8.32813 -6.97573 -5.94865 -4.08357 3.28874 3.34125 3.36708 4.41623 4.73548 4.92834 4.97536 5.13800 5.28962 5.50765 5.61722 5.72034 5.80567 5.85416 5.98240 6.03203 6.12118 6.13336 6.21506 6.33582 6.37906 6.40169 6.45751 6.50448 6.62343 6.63785 6.69084 6.71905 6.83792 6.87692 7.05075 7.16114 7.24442 7.42915 7.66840 7.81499 8.04215 8.23145 8.42128 8.57009 9.02273 9.58816 11.03687 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.008014 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.808879 B = 3492.917636 C = 3888.077491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.218 3.782 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.544 5.544 14 C 0.070 3.930 15 C -0.104 4.104 16 C -0.099 4.099 17 H 0.065 0.935 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.093 4.093 22 H 0.076 0.924 23 C 0.080 3.920 24 H 0.024 0.976 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 4.363 10.971 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.269 5.269 14 C -0.059 4.059 15 C -0.142 4.142 16 C -0.117 4.117 17 H 0.083 0.917 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.111 4.111 22 H 0.094 0.906 23 C -0.048 4.048 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.450 4.219 10.803 12.422 hybrid contribution 2.049 0.090 -0.217 2.062 sum -2.401 4.309 10.586 11.679 Atomic orbital electron populations 1.21687 0.98886 0.98217 1.00532 1.21599 0.92149 0.99237 1.01899 1.19210 0.92439 0.90878 0.86314 0.94646 1.21716 0.92834 1.37130 1.06295 0.92769 1.24905 0.97823 0.95143 0.95564 1.69868 1.35003 1.37711 1.09917 0.86766 0.86412 0.78135 0.77327 1.20378 1.21246 1.20452 1.61646 1.59874 1.01484 1.03877 1.21756 0.98781 0.89424 0.95892 1.21465 1.00053 0.97958 0.94754 1.21684 1.00047 0.96468 0.93537 0.91672 1.21911 1.00942 0.97109 0.95258 1.22514 1.00733 0.95005 0.97641 1.22147 1.00871 0.97088 0.95353 1.21954 1.00510 0.94977 0.93693 0.90572 1.21645 0.96596 0.98022 0.88568 0.95734 0.93528 0.94265 0.89140 0.94848 0.92896 0.92230 0.95095 0.92684 0.91876 0.92512 0.92103 0.92267 0.92493 0.92025 0.91788 0.94554 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.70 37.16 0.36 -2.43 16 2 C -0.11 -2.63 5.04 -26.73 -0.13 -2.76 16 3 C 0.22 5.37 1.73 -68.86 -0.12 5.26 16 4 H 0.04 0.98 8.01 -51.93 -0.42 0.56 16 5 C -0.54 -14.50 7.17 -34.44 -0.25 -14.74 16 6 H 0.05 1.47 6.06 -52.48 -0.32 1.15 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.02 11.30 55.43 0.63 -24.40 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.54 -11.47 3.91 -228.12 -0.89 -12.36 16 14 C 0.07 1.37 5.24 -3.68 -0.02 1.35 16 15 C -0.10 -1.64 5.81 -26.99 -0.16 -1.80 16 16 C -0.10 -1.50 2.26 -90.36 -0.20 -1.70 16 17 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 18 C -0.11 -1.43 6.52 -25.97 -0.17 -1.60 16 19 C -0.12 -1.43 6.88 -24.38 -0.17 -1.60 16 20 C -0.12 -1.58 6.48 -25.39 -0.16 -1.75 16 21 C -0.09 -1.48 2.49 -89.93 -0.22 -1.70 16 22 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 23 C 0.08 1.56 4.52 -4.07 -0.02 1.54 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.92 7.83 -51.92 -0.41 0.51 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 2.41 6.01 -51.93 -0.31 2.09 16 28 H 0.03 0.78 6.28 -51.93 -0.33 0.46 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 31 H 0.03 0.67 7.16 -51.93 -0.37 0.29 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.79 6.43 -51.93 -0.33 0.45 16 41 H 0.07 1.38 6.18 -51.93 -0.32 1.06 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -26.91 302.95 -9.50 -36.41 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.42 Total: -0.29 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -1.36 Total: -20.18 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.26 Total: -36.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.91 -9.50 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.556 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds