Wall clock time and date at job start Sun Mar 29 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 H 1.09003 * 109.47041 * 302.26535 * 3 2 1 5 5 C 1.50698 * 109.47053 * 182.26657 * 3 2 1 6 6 H 1.08003 * 120.00040 * 239.99907 * 5 3 2 7 7 C 1.37876 * 120.00475 * 59.99676 * 5 3 2 8 8 N 1.31517 * 119.99455 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00581 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46927 * 60.00096 * 9 7 5 11 11 H 1.48500 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46861 * 300.00667 * 9 7 5 13 13 N 1.46898 * 109.47168 * 62.26726 * 3 2 1 14 14 C 1.46336 * 111.00069 * 190.71966 * 13 3 2 15 15 C 1.53858 * 111.73228 * 178.33736 * 14 13 3 16 16 C 1.51613 * 106.95725 * 56.30461 * 15 14 13 17 17 H 1.09002 * 109.76603 * 56.45967 * 16 15 14 18 18 C 1.52374 * 117.08725 * 182.44354 * 16 15 14 19 19 C 1.55041 * 105.20699 * 146.74838 * 18 16 15 20 20 C 1.55396 * 106.35969 * 356.28957 * 19 18 16 21 21 C 1.53131 * 102.82828 * 335.94417 * 20 19 18 22 22 H 1.08990 * 110.93528 * 284.59867 * 21 20 19 23 23 C 1.47673 * 110.93705 * 63.31313 * 13 3 2 24 24 H 1.09004 * 109.47324 * 174.63984 * 1 2 3 25 25 H 1.09007 * 109.47450 * 294.63663 * 1 2 3 26 26 H 1.08995 * 109.47397 * 54.63925 * 1 2 3 27 27 H 1.08997 * 109.47447 * 240.00094 * 2 1 3 28 28 H 1.08998 * 109.47194 * 119.99633 * 2 1 3 29 29 H 0.97004 * 120.00128 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.01365 * 57.78690 * 14 13 3 31 31 H 1.08998 * 109.01857 * 298.89684 * 14 13 3 32 32 H 1.08998 * 109.95674 * 175.66338 * 15 14 13 33 33 H 1.09001 * 109.95711 * 296.94473 * 15 14 13 34 34 H 1.09000 * 110.28943 * 265.70878 * 18 16 15 35 35 H 1.08996 * 110.29351 * 27.82649 * 18 16 15 36 36 H 1.08996 * 110.09611 * 237.04950 * 19 18 16 37 37 H 1.09002 * 110.09456 * 115.52352 * 19 18 16 38 38 H 1.09001 * 110.73545 * 217.61633 * 20 19 18 39 39 H 1.09000 * 110.89960 * 94.35730 * 20 19 18 40 40 H 1.09006 * 109.99716 * 65.71591 * 23 13 3 41 41 H 1.08997 * 109.94269 * 304.44965 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6437 1.9680 -0.8690 5 6 3.5458 1.4430 -0.0562 6 1 4.1158 1.9001 0.7392 7 6 4.1962 0.8598 -1.1229 8 7 3.5021 0.3036 -2.0918 9 14 6.0628 0.8610 -1.1930 10 1 6.6030 0.1456 -0.0090 11 1 6.5121 0.1775 -2.4324 12 1 6.5572 2.2612 -1.1933 13 7 1.5955 2.1190 1.2259 14 6 1.8428 3.5593 1.1492 15 6 1.3459 4.2905 2.4084 16 6 2.0317 3.6429 3.5954 17 1 3.1131 3.6870 3.4655 18 6 1.6573 4.1588 4.9794 19 6 1.7485 2.9237 5.9122 20 6 2.0843 1.7107 5.0008 21 6 1.5663 2.1605 3.6317 22 1 0.4788 2.1018 3.5883 23 6 2.1790 1.4799 2.4224 24 1 -0.3634 -1.0232 -0.0960 25 1 -0.3634 0.4284 0.9342 26 1 -0.3634 0.5947 -0.8380 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9595 -0.1064 -2.8425 30 1 1.3270 3.9623 0.2777 31 1 2.9136 3.7304 1.0385 32 1 1.6124 5.3460 2.3552 33 1 0.2650 4.1828 2.4990 34 1 2.3607 4.9276 5.2993 35 1 0.6414 4.5538 4.9736 36 1 0.7946 2.7621 6.4140 37 1 2.5389 3.0684 6.6489 38 1 1.5584 0.8174 5.3380 39 1 3.1595 1.5348 4.9681 40 1 3.2605 1.6158 2.4277 41 1 1.9369 0.4172 2.4317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:29 Heat of formation + Delta-G solvation = -34.692025 kcal Electronic energy + Delta-G solvation = -18240.341600 eV Core-core repulsion = 15732.186466 eV Total energy + Delta-G solvation = -2508.155133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86361 -37.95023 -34.97908 -33.56461 -32.18392 -30.57986 -28.49125 -27.81291 -25.08238 -24.03845 -22.42302 -21.01766 -20.92630 -20.58793 -18.35453 -17.05876 -16.27704 -15.93939 -15.66096 -15.31726 -14.98674 -14.73579 -14.62877 -14.10196 -13.53616 -13.44177 -13.35487 -13.10084 -12.97726 -12.74651 -12.54156 -12.14277 -12.07204 -11.85158 -11.66193 -11.56753 -11.52513 -11.38519 -11.20446 -11.16557 -10.92653 -10.62420 -10.41661 -8.84014 -8.02788 -6.26502 1.34815 1.35310 1.42975 2.37922 3.13339 3.34324 3.63174 3.85732 3.92190 4.30511 4.37982 4.46746 4.57418 4.63074 4.67750 4.73748 4.76767 4.79139 4.89636 4.92877 4.97717 5.01029 5.07489 5.08907 5.17757 5.22741 5.29538 5.32739 5.39299 5.39854 5.43919 5.51559 5.61285 5.63941 5.69628 5.80925 6.07513 6.23403 6.41364 6.78339 6.95660 7.44018 8.90648 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.008014 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.808879 B = 3492.917636 C = 3888.077491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.223 3.777 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.539 5.539 14 C 0.069 3.931 15 C -0.093 4.093 16 C -0.097 4.097 17 H 0.044 0.956 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.089 4.089 22 H 0.079 0.921 23 C 0.085 3.915 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.009 0.991 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 5.036 13.132 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.263 5.263 14 C -0.060 4.060 15 C -0.131 4.131 16 C -0.116 4.116 17 H 0.063 0.937 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.107 4.107 22 H 0.097 0.903 23 C -0.043 4.043 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.021 0.979 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.037 4.900 12.979 14.759 hybrid contribution 2.237 -0.119 -0.929 2.425 sum -2.801 4.781 12.050 13.263 Atomic orbital electron populations 1.21538 0.96119 0.99571 1.00790 1.21432 0.94570 0.98094 1.00209 1.18994 0.91258 0.91402 0.86794 0.98209 1.21930 0.94155 1.36840 1.06023 0.93804 1.25600 1.01895 0.94991 0.95361 1.69992 1.36438 1.38250 1.10295 0.85839 0.81574 0.78109 0.77486 1.19972 1.20571 1.20236 1.61624 1.59419 1.02224 1.03046 1.21831 0.97144 0.88866 0.98153 1.21386 1.00538 0.98476 0.92665 1.21668 0.98718 0.95985 0.95192 0.93709 1.21882 1.02012 0.97695 0.92974 1.22494 1.02154 0.93320 0.97276 1.22155 1.00366 0.98675 0.94165 1.21892 1.00272 0.95334 0.93244 0.90270 1.21606 0.95133 0.97820 0.89723 0.93639 0.92486 0.94836 0.92093 0.95121 0.92889 0.93022 0.97892 0.90659 0.90738 0.91321 0.90744 0.90569 0.91152 0.90922 0.92695 0.97303 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.70 71.98 0.70 -4.29 16 2 C -0.10 -5.10 5.04 30.59 0.15 -4.94 16 3 C 0.22 11.41 1.73 44.17 0.08 11.49 16 4 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 5 C -0.55 -30.61 7.17 25.60 0.18 -30.43 16 6 H 0.04 2.48 6.06 -2.91 -0.02 2.46 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.83 11.30 21.45 0.24 -52.59 16 9 Si 0.94 44.46 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.54 -23.18 3.91 -875.63 -3.42 -26.60 16 14 C 0.07 2.73 5.24 86.70 0.45 3.19 16 15 C -0.09 -2.77 5.81 30.43 0.18 -2.59 16 16 C -0.10 -2.77 2.26 -10.62 -0.02 -2.79 16 17 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 18 C -0.11 -2.31 6.52 31.09 0.20 -2.10 16 19 C -0.11 -2.28 6.88 32.12 0.22 -2.06 16 20 C -0.12 -2.88 6.48 31.46 0.20 -2.68 16 21 C -0.09 -2.70 2.49 -10.35 -0.03 -2.73 16 22 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 23 C 0.08 3.38 4.52 85.72 0.39 3.76 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 2.18 7.83 -2.38 -0.02 2.16 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 3.34 6.01 -2.39 -0.01 3.33 16 28 H 0.03 1.47 6.28 -2.39 -0.01 1.46 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 31 H 0.00 0.13 7.16 -2.39 -0.02 0.11 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.01 0.39 6.43 -2.38 -0.02 0.38 16 41 H 0.06 2.36 6.18 -2.39 -0.01 2.34 16 Total: -1.00 -59.35 302.95 2.97 -56.38 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 3.16 Total: -34.53 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.18 Total: -79.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.35 2.97 -56.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.685 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds