Wall clock time and date at job start Sun Mar 29 2020 22:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 H 1.08991 * 109.47348 * 302.64358 * 3 2 1 5 5 C 1.50708 * 109.46905 * 182.64640 * 3 2 1 6 6 H 1.07999 * 120.00209 * 275.03412 * 5 3 2 7 7 C 1.37876 * 119.99972 * 95.03804 * 5 3 2 8 8 N 1.31513 * 120.00178 * 184.78775 * 7 5 3 9 9 Si 1.86802 * 119.99836 * 4.79148 * 7 5 3 10 10 H 1.48494 * 109.47301 * 84.91683 * 9 7 5 11 11 H 1.48503 * 109.46970 * 204.91973 * 9 7 5 12 12 H 1.48496 * 109.47234 * 324.91277 * 9 7 5 13 13 N 1.46897 * 109.47202 * 62.64772 * 3 2 1 14 14 C 1.46338 * 111.00316 * 52.62660 * 13 3 2 15 15 C 1.53825 * 111.84587 * 181.58476 * 14 13 3 16 16 C 1.51788 * 106.94477 * 303.36733 * 15 14 13 17 17 H 1.09000 * 111.04460 * 302.19464 * 16 15 14 18 18 C 1.53161 * 116.26335 * 174.82437 * 16 15 14 19 19 C 1.55396 * 102.84094 * 202.97732 * 18 16 15 20 20 C 1.54991 * 106.35414 * 24.04065 * 19 18 16 21 21 C 1.52354 * 105.21693 * 3.73554 * 20 19 18 22 22 H 1.09006 * 109.70503 * 87.12538 * 21 20 19 23 23 C 1.47722 * 111.00071 * 179.97438 * 13 3 2 24 24 H 1.08997 * 109.47596 * 299.99910 * 1 2 3 25 25 H 1.09005 * 109.47177 * 60.00633 * 1 2 3 26 26 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47410 * 239.99597 * 2 1 3 28 28 H 1.09002 * 109.47116 * 120.00134 * 2 1 3 29 29 H 0.96998 * 120.00061 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.00175 * 302.19247 * 14 13 3 31 31 H 1.09003 * 109.00558 * 61.05174 * 14 13 3 32 32 H 1.09002 * 109.95474 * 184.00495 * 15 14 13 33 33 H 1.08998 * 109.95588 * 62.72792 * 15 14 13 34 34 H 1.08998 * 110.73786 * 84.63637 * 18 16 15 35 35 H 1.09001 * 110.73766 * 321.31274 * 18 16 15 36 36 H 1.09004 * 110.07471 * 264.82290 * 19 18 16 37 37 H 1.08997 * 110.12520 * 143.29655 * 19 18 16 38 38 H 1.09002 * 110.28876 * 122.66737 * 20 19 18 39 39 H 1.08994 * 110.29421 * 244.80176 * 20 19 18 40 40 H 1.08998 * 109.93426 * 55.98452 * 23 13 3 41 41 H 1.08999 * 109.93055 * 294.77274 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6384 1.9698 -0.8652 5 6 3.5455 1.4430 -0.0656 6 1 4.1256 1.3468 0.8403 7 6 4.1825 1.5664 -1.2822 8 7 5.4925 1.4725 -1.3511 9 14 3.1848 1.8671 -2.8326 10 1 2.9251 3.3217 -2.9798 11 1 3.9432 1.3777 -4.0119 12 1 1.8931 1.1405 -2.7386 13 7 1.6031 2.1163 1.2301 14 6 1.9761 1.3406 2.4137 15 6 1.4933 2.0097 3.7119 16 6 2.0787 3.4100 3.7322 17 1 3.1667 3.3802 3.6729 18 6 1.6305 4.3154 4.8833 19 6 1.8787 5.7414 4.3179 20 6 1.8433 5.6109 2.7739 21 6 1.4858 4.1547 2.5037 22 1 0.4020 4.0385 2.4914 23 6 2.0787 3.5144 1.2654 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.9406 1.5597 -2.2069 30 1 1.5339 0.3470 2.3407 31 1 3.0613 1.2443 2.4476 32 1 1.8473 1.4458 4.5750 33 1 0.4046 2.0614 3.7212 34 1 2.2386 4.1408 5.7709 35 1 0.5733 4.1658 5.1028 36 1 2.8536 6.1072 4.6402 37 1 1.0948 6.4199 4.6543 38 1 1.0828 6.2706 2.3561 39 1 2.8208 5.8446 2.3522 40 1 1.7407 4.0445 0.3750 41 1 3.1671 3.5353 1.3207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:32 Heat of formation + Delta-G solvation = -19.574970 kcal Electronic energy + Delta-G solvation = -18269.238755 eV Core-core repulsion = 15761.739147 eV Total energy + Delta-G solvation = -2507.499609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51573 -36.58804 -33.00285 -31.93786 -31.27803 -28.94283 -27.32813 -26.43206 -23.18457 -22.02212 -21.71652 -19.99283 -19.28353 -18.68599 -16.90148 -15.34281 -14.89395 -14.51849 -14.23390 -14.08044 -13.60759 -13.03452 -12.88711 -12.60117 -12.32383 -12.16859 -11.84758 -11.70363 -11.47865 -11.02367 -10.92081 -10.84738 -10.59763 -10.54127 -10.25582 -10.07169 -9.96367 -9.87582 -9.76003 -9.47870 -9.40156 -9.19929 -8.55563 -6.98021 -6.11154 -4.10990 3.26903 3.35597 3.38754 4.39422 4.70717 4.88301 4.99579 5.05529 5.27373 5.53503 5.60854 5.71483 5.80880 5.81255 5.95175 6.01629 6.03833 6.11643 6.12490 6.14859 6.20266 6.29471 6.35428 6.39845 6.45883 6.54082 6.60745 6.65293 6.76055 6.78050 6.79135 6.86860 7.03676 7.08763 7.24144 7.28957 7.63500 8.20961 8.34797 8.48528 8.93794 9.53877 11.01990 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.008512 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.850111 B = 3288.511932 C = 3749.896851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.182 3.818 4 H 0.040 0.960 5 C -0.538 4.538 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.540 5.540 14 C 0.062 3.938 15 C -0.105 4.105 16 C -0.098 4.098 17 H 0.072 0.928 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.093 4.093 22 H 0.071 0.929 23 C 0.082 3.918 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 4.394 8.641 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.075 3.925 4 H 0.058 0.942 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.127 4.127 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.264 5.264 14 C -0.066 4.066 15 C -0.142 4.142 16 C -0.116 4.116 17 H 0.090 0.910 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.112 4.112 22 H 0.090 0.910 23 C -0.046 4.046 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.106 4.405 8.501 13.213 hybrid contribution 0.626 0.118 -0.994 1.181 sum -8.479 4.523 7.507 12.195 Atomic orbital electron populations 1.21768 0.97800 0.99103 1.01488 1.21824 0.93422 0.99136 1.00853 1.19660 0.93955 0.90486 0.88392 0.94220 1.21567 0.90527 1.50722 0.94892 0.90898 1.25027 0.94644 0.94261 0.98800 1.69928 1.08107 1.49825 1.25715 0.86921 0.80856 0.79103 0.83105 1.20177 1.21615 1.18670 1.61700 1.60660 1.01410 1.02668 1.21889 0.98773 0.96710 0.89272 1.21481 1.00269 0.95175 0.97316 1.21900 1.00075 0.94748 0.94891 0.90984 1.22181 1.00684 0.94858 0.97588 1.22510 1.00907 0.96864 0.95655 1.21878 1.01488 0.96793 0.95266 1.21701 1.00465 0.93252 0.95742 0.91035 1.21528 0.98363 0.89110 0.95599 0.92239 0.94083 0.94969 0.93030 0.92740 0.92727 0.91469 0.94693 0.92585 0.91924 0.92318 0.91902 0.92258 0.92455 0.92241 0.91789 0.92328 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.72 37.16 0.36 -2.23 16 2 C -0.11 -2.41 4.91 -26.73 -0.13 -2.54 16 3 C 0.18 4.22 1.51 -68.86 -0.10 4.11 16 4 H 0.04 0.97 5.29 -51.93 -0.27 0.69 16 5 C -0.54 -14.61 7.30 -34.44 -0.25 -14.86 16 6 H 0.07 2.19 6.67 -52.49 -0.35 1.84 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.87 21.43 26.99 -169.99 -4.59 16.84 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 13 N -0.54 -11.01 3.91 -228.22 -0.89 -11.91 16 14 C 0.06 1.17 4.73 -3.70 -0.02 1.15 16 15 C -0.10 -1.61 5.81 -26.92 -0.16 -1.77 16 16 C -0.10 -1.48 2.40 -89.87 -0.22 -1.70 16 17 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 18 C -0.12 -1.44 6.47 -25.38 -0.16 -1.61 16 19 C -0.12 -1.47 6.88 -24.41 -0.17 -1.63 16 20 C -0.12 -1.60 6.52 -26.01 -0.17 -1.77 16 21 C -0.09 -1.48 2.34 -90.43 -0.21 -1.69 16 22 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 23 C 0.08 1.62 4.85 -4.13 -0.02 1.60 16 24 H 0.06 1.04 7.66 -51.93 -0.40 0.64 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.13 6.11 -51.93 -0.32 0.81 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 31 H 0.03 0.75 6.54 -51.93 -0.34 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.08 7.27 -51.93 -0.38 0.70 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -28.31 302.21 -8.92 -37.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.42 Total: 0.54 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.35 Total: -20.91 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.12 Total: -38.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.31 -8.92 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.652 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds