Wall clock time and date at job start Sun Mar 29 2020 22:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 H 1.08991 * 109.47348 * 302.64358 * 3 2 1 5 5 C 1.50708 * 109.46905 * 182.64640 * 3 2 1 6 6 H 1.07999 * 120.00209 * 275.03412 * 5 3 2 7 7 C 1.37876 * 119.99972 * 95.03804 * 5 3 2 8 8 N 1.31513 * 120.00178 * 184.78775 * 7 5 3 9 9 Si 1.86802 * 119.99836 * 4.79148 * 7 5 3 10 10 H 1.48494 * 109.47301 * 84.91683 * 9 7 5 11 11 H 1.48503 * 109.46970 * 204.91973 * 9 7 5 12 12 H 1.48496 * 109.47234 * 324.91277 * 9 7 5 13 13 N 1.46897 * 109.47202 * 62.64772 * 3 2 1 14 14 C 1.46338 * 111.00316 * 52.62660 * 13 3 2 15 15 C 1.53825 * 111.84587 * 181.58476 * 14 13 3 16 16 C 1.51788 * 106.94477 * 303.36733 * 15 14 13 17 17 H 1.09000 * 111.04460 * 302.19464 * 16 15 14 18 18 C 1.53161 * 116.26335 * 174.82437 * 16 15 14 19 19 C 1.55396 * 102.84094 * 202.97732 * 18 16 15 20 20 C 1.54991 * 106.35414 * 24.04065 * 19 18 16 21 21 C 1.52354 * 105.21693 * 3.73554 * 20 19 18 22 22 H 1.09006 * 109.70503 * 87.12538 * 21 20 19 23 23 C 1.47722 * 111.00071 * 179.97438 * 13 3 2 24 24 H 1.08997 * 109.47596 * 299.99910 * 1 2 3 25 25 H 1.09005 * 109.47177 * 60.00633 * 1 2 3 26 26 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47410 * 239.99597 * 2 1 3 28 28 H 1.09002 * 109.47116 * 120.00134 * 2 1 3 29 29 H 0.96998 * 120.00061 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.00175 * 302.19247 * 14 13 3 31 31 H 1.09003 * 109.00558 * 61.05174 * 14 13 3 32 32 H 1.09002 * 109.95474 * 184.00495 * 15 14 13 33 33 H 1.08998 * 109.95588 * 62.72792 * 15 14 13 34 34 H 1.08998 * 110.73786 * 84.63637 * 18 16 15 35 35 H 1.09001 * 110.73766 * 321.31274 * 18 16 15 36 36 H 1.09004 * 110.07471 * 264.82290 * 19 18 16 37 37 H 1.08997 * 110.12520 * 143.29655 * 19 18 16 38 38 H 1.09002 * 110.28876 * 122.66737 * 20 19 18 39 39 H 1.08994 * 110.29421 * 244.80176 * 20 19 18 40 40 H 1.08998 * 109.93426 * 55.98452 * 23 13 3 41 41 H 1.08999 * 109.93055 * 294.77274 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6384 1.9698 -0.8652 5 6 3.5455 1.4430 -0.0656 6 1 4.1256 1.3468 0.8403 7 6 4.1825 1.5664 -1.2822 8 7 5.4925 1.4725 -1.3511 9 14 3.1848 1.8671 -2.8326 10 1 2.9251 3.3217 -2.9798 11 1 3.9432 1.3777 -4.0119 12 1 1.8931 1.1405 -2.7386 13 7 1.6031 2.1163 1.2301 14 6 1.9761 1.3406 2.4137 15 6 1.4933 2.0097 3.7119 16 6 2.0787 3.4100 3.7322 17 1 3.1667 3.3802 3.6729 18 6 1.6305 4.3154 4.8833 19 6 1.8787 5.7414 4.3179 20 6 1.8433 5.6109 2.7739 21 6 1.4858 4.1547 2.5037 22 1 0.4020 4.0385 2.4914 23 6 2.0787 3.5144 1.2654 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.9406 1.5597 -2.2069 30 1 1.5339 0.3470 2.3407 31 1 3.0613 1.2443 2.4476 32 1 1.8473 1.4458 4.5750 33 1 0.4046 2.0614 3.7212 34 1 2.2386 4.1408 5.7709 35 1 0.5733 4.1658 5.1028 36 1 2.8536 6.1072 4.6402 37 1 1.0948 6.4199 4.6543 38 1 1.0828 6.2706 2.3561 39 1 2.8208 5.8446 2.3522 40 1 1.7407 4.0445 0.3750 41 1 3.1671 3.5353 1.3207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:31 Heat of formation + Delta-G solvation = -35.908080 kcal Electronic energy + Delta-G solvation = -18269.947012 eV Core-core repulsion = 15761.739147 eV Total energy + Delta-G solvation = -2508.207865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91016 -38.14057 -34.74508 -33.81178 -32.70020 -30.36217 -28.86248 -28.00812 -24.91016 -23.51659 -23.24002 -21.14146 -20.65421 -20.42494 -18.95588 -17.08595 -16.20335 -16.08764 -15.68331 -15.58284 -15.19964 -14.69579 -14.38664 -14.19062 -13.85011 -13.72976 -13.38866 -13.14362 -13.10512 -12.81919 -12.42017 -12.17548 -11.93974 -11.90098 -11.74343 -11.65318 -11.51561 -11.43941 -11.24988 -11.14548 -11.01835 -10.70081 -10.68367 -8.80333 -8.32924 -6.36025 1.29933 1.31461 1.42585 2.30383 2.99566 3.29317 3.61484 3.86212 3.90424 4.28860 4.31350 4.37701 4.48109 4.54770 4.61647 4.65302 4.69352 4.75331 4.78103 4.89773 4.92627 4.94342 5.01046 5.07026 5.14958 5.16744 5.23290 5.24381 5.28350 5.35205 5.37687 5.41969 5.47200 5.56164 5.59398 5.68237 5.71970 6.20547 6.44649 6.63848 6.72664 7.32164 8.84158 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.008512 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.850111 B = 3288.511932 C = 3749.896851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.182 3.818 4 H 0.035 0.965 5 C -0.530 4.530 6 H 0.027 0.973 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.242 1.242 13 N -0.529 5.529 14 C 0.063 3.937 15 C -0.095 4.095 16 C -0.099 4.099 17 H 0.042 0.958 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.087 4.087 22 H 0.083 0.917 23 C 0.083 3.917 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.264 0.736 30 H 0.074 0.926 31 H -0.007 1.007 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 5.026 9.594 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.074 3.926 4 H 0.053 0.947 5 C -0.569 4.569 6 H 0.045 0.955 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.759 3.241 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.165 1.165 13 N -0.252 5.252 14 C -0.065 4.065 15 C -0.132 4.132 16 C -0.117 4.117 17 H 0.060 0.940 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.106 4.106 22 H 0.101 0.899 23 C -0.045 4.045 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.012 0.988 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -12.394 5.038 9.475 16.394 hybrid contribution 1.731 -0.103 -1.225 2.123 sum -10.663 4.935 8.250 14.357 Atomic orbital electron populations 1.21653 0.94506 1.00980 1.01892 1.21727 0.96258 0.97022 1.00139 1.19619 0.90967 0.92275 0.89692 0.94724 1.21779 0.92802 1.49274 0.93086 0.95507 1.25882 0.95578 0.94367 1.02404 1.70081 1.10105 1.52136 1.26594 0.85911 0.79996 0.79438 0.78723 1.19440 1.21387 1.16544 1.61749 1.59620 1.01578 1.02265 1.21955 0.96365 0.97537 0.90644 1.21432 1.01250 0.95032 0.95498 1.21882 0.98319 0.95304 0.96230 0.93983 1.22148 1.01838 0.93860 0.96530 1.22500 1.02034 0.97192 0.93731 1.21905 1.01070 0.95409 0.97110 1.21646 1.00561 0.94686 0.93730 0.89916 1.21524 0.95949 0.89322 0.97716 0.91565 0.93892 0.92395 0.94387 0.92995 0.92729 0.90811 0.98834 0.90771 0.89975 0.91147 0.90129 0.92041 0.90052 0.90607 0.93480 0.92988 0.97694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.72 71.98 0.70 -3.69 16 2 C -0.11 -4.70 4.91 30.59 0.15 -4.55 16 3 C 0.18 8.53 1.51 44.17 0.07 8.60 16 4 H 0.03 1.67 5.29 -2.39 -0.01 1.65 16 5 C -0.53 -30.26 7.30 25.60 0.19 -30.07 16 6 H 0.03 1.74 6.67 -2.91 -0.02 1.72 16 7 C 0.02 0.90 5.47 84.65 0.46 1.36 16 8 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 9 Si 0.94 44.83 26.99 68.60 1.85 46.68 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.24 -10.73 6.82 99.48 0.68 -10.05 16 13 N -0.53 -21.62 3.91 -875.95 -3.43 -25.05 16 14 C 0.06 2.40 4.73 86.69 0.41 2.81 16 15 C -0.09 -2.73 5.81 30.47 0.18 -2.56 16 16 C -0.10 -2.88 2.40 -10.31 -0.02 -2.91 16 17 H 0.04 1.47 8.09 -2.39 -0.02 1.45 16 18 C -0.11 -2.30 6.47 31.47 0.20 -2.10 16 19 C -0.12 -2.46 6.88 32.10 0.22 -2.24 16 20 C -0.12 -3.04 6.52 31.06 0.20 -2.84 16 21 C -0.09 -2.69 2.34 -10.67 -0.02 -2.72 16 22 H 0.08 2.42 8.01 -2.38 -0.02 2.40 16 23 C 0.08 3.36 4.85 85.65 0.42 3.78 16 24 H 0.07 2.10 7.66 -2.39 -0.02 2.08 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 2.15 6.11 -2.39 -0.01 2.14 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.07 2.68 5.89 -2.39 -0.01 2.66 16 31 H -0.01 -0.31 6.54 -2.39 -0.02 -0.33 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.37 8.09 -2.39 -0.02 1.35 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.00 0.23 7.27 -2.39 -0.02 0.21 16 Total: -1.00 -64.71 302.21 2.81 -61.90 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.94 Total: 13.39 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.15 Total: -37.12 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.13 Total: -84.85 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.85 Total: 46.68 kcal Total: -64.71 2.81 -61.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.992 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds