Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 H 1.09000 * 109.47158 * 56.00620 * 3 2 1 5 5 C 1.50696 * 109.46889 * 295.99944 * 3 2 1 6 6 H 1.07993 * 120.00459 * 275.38980 * 5 3 2 7 7 C 1.37882 * 119.99860 * 95.39628 * 5 3 2 8 8 N 1.31517 * 119.99712 * 7.43520 * 7 5 3 9 9 Si 1.86797 * 120.00097 * 187.44105 * 7 5 3 10 10 H 1.48501 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47320 * 119.99570 * 9 7 5 12 12 H 1.48499 * 109.47142 * 239.99848 * 9 7 5 13 13 N 1.46901 * 109.46773 * 176.00020 * 3 2 1 14 14 C 1.46822 * 110.99831 * 57.88430 * 13 3 2 15 15 C 1.53014 * 109.77063 * 172.44693 * 14 13 3 16 16 C 1.53291 * 109.19474 * 60.93903 * 15 14 13 17 17 C 1.52811 * 108.87985 * 304.48653 * 16 15 14 18 18 C 1.53381 * 113.51745 * 282.95363 * 17 16 15 19 19 C 1.53858 * 86.96064 * 220.11716 * 18 17 16 20 20 C 1.53359 * 113.56687 * 185.03106 * 17 16 15 21 21 C 1.47000 * 111.00353 * 293.70750 * 13 3 2 22 22 H 1.09001 * 109.47575 * 305.85424 * 1 2 3 23 23 H 1.09000 * 109.47050 * 65.85646 * 1 2 3 24 24 H 1.09004 * 109.47638 * 185.85631 * 1 2 3 25 25 H 1.08999 * 109.47171 * 239.99874 * 2 1 3 26 26 H 1.08998 * 109.46469 * 119.99998 * 2 1 3 27 27 H 0.97000 * 119.99676 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.42330 * 292.53942 * 14 13 3 29 29 H 1.08997 * 109.42099 * 52.41498 * 14 13 3 30 30 H 1.08997 * 109.52295 * 180.85184 * 15 14 13 31 31 H 1.08998 * 109.51830 * 300.96951 * 15 14 13 32 32 H 1.08997 * 109.56981 * 64.30676 * 16 15 14 33 33 H 1.09002 * 109.56708 * 184.66657 * 16 15 14 34 34 H 1.09000 * 113.63339 * 334.63485 * 18 17 16 35 35 H 1.08997 * 113.63364 * 105.60511 * 18 17 16 36 36 H 1.08993 * 113.60606 * 270.56378 * 19 18 17 37 37 H 1.09006 * 113.59960 * 139.69088 * 19 18 17 38 38 H 1.09000 * 113.63351 * 254.34705 * 20 17 16 39 39 H 1.09000 * 113.63665 * 25.22850 * 20 17 16 40 40 H 1.08996 * 109.50364 * 303.42753 * 21 13 3 41 41 H 1.09004 * 109.50035 * 63.54466 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 0.8520 5 6 1.6202 2.1237 -1.2770 6 1 2.2190 2.0150 -2.1691 7 6 0.4715 2.8858 -1.3064 8 7 -0.1782 3.1393 -0.1913 9 14 -0.1621 3.5580 -2.9300 10 1 0.7431 3.1340 -4.0282 11 1 -1.5282 3.0337 -3.1836 12 1 -0.2045 5.0411 -2.8689 13 7 3.5058 1.4436 0.0966 14 6 4.1065 0.6885 -1.0100 15 6 5.6265 0.8631 -0.9907 16 6 6.1795 0.3200 0.3319 17 6 5.4696 1.0208 1.4895 18 6 5.9769 2.4454 1.7461 19 6 5.8624 2.1279 3.2472 20 6 6.0276 0.6459 2.8680 21 6 3.9484 0.9216 1.3975 22 1 -0.3634 0.6019 0.8329 23 1 -0.3633 0.4203 -0.9378 24 1 -0.3634 -1.0223 0.1049 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 -0.9865 3.6751 -0.2121 28 1 3.8617 -0.3683 -0.9027 29 1 3.7122 1.0575 -1.9567 30 1 6.0669 0.3134 -1.8225 31 1 5.8728 1.9209 -1.0822 32 1 5.9996 -0.7534 0.3895 33 1 7.2503 0.5161 0.3878 34 1 7.0009 2.6115 1.4115 35 1 5.2892 3.2213 1.4100 36 1 4.8859 2.3640 3.6700 37 1 6.6879 2.5211 3.8407 38 1 5.3806 -0.0245 3.4337 39 1 7.0651 0.3127 2.8436 40 1 3.4965 1.5076 2.1977 41 1 3.6453 -0.1211 1.4935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = 7.296569 kcal Electronic energy + Delta-G solvation = -18277.177112 eV Core-core repulsion = 15770.842741 eV Total energy + Delta-G solvation = -2506.334371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89944 -36.77456 -33.72948 -31.79134 -30.46365 -28.32082 -26.38847 -25.33739 -23.86036 -22.85867 -22.18860 -20.55537 -19.00931 -17.46113 -16.17504 -15.41583 -14.98523 -14.40232 -14.12285 -13.76629 -13.49010 -13.32173 -13.07274 -12.58210 -12.10546 -12.04595 -11.98981 -11.27788 -11.21405 -10.94836 -10.88569 -10.74885 -10.63889 -10.37663 -10.35168 -10.14791 -9.92315 -9.75479 -9.58370 -9.34440 -9.20427 -8.83588 -8.34620 -6.96300 -5.98529 -3.97794 3.31255 3.40057 3.43693 4.44363 4.76225 4.95433 4.99359 5.12644 5.25649 5.47719 5.57741 5.65994 5.73706 5.87327 5.97252 6.03078 6.12229 6.14093 6.21899 6.28383 6.31292 6.34630 6.37680 6.43298 6.50347 6.63142 6.67360 6.73781 6.81446 6.86438 6.94948 6.98392 7.22053 7.32021 7.59708 7.63550 7.89656 8.15441 8.50864 8.71137 9.08950 9.63751 11.10407 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.007435 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.660936 B = 3764.817495 C = 3844.427679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.201 3.799 4 H 0.071 0.929 5 C -0.494 4.494 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.060 3.940 15 C -0.116 4.116 16 C -0.100 4.100 17 C -0.072 4.072 18 C -0.123 4.123 19 C -0.142 4.142 20 C -0.136 4.136 21 C 0.078 3.922 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.013 0.987 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.259 0.741 28 H 0.017 0.983 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -4.649 3.475 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.096 3.904 4 H 0.089 0.911 5 C -0.532 4.532 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.245 5.245 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.138 4.138 17 C -0.073 4.073 18 C -0.160 4.160 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.050 4.050 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.879 -4.050 3.502 11.236 hybrid contribution -0.722 -0.525 -0.782 1.186 sum 9.157 -4.574 2.720 10.591 Atomic orbital electron populations 1.21419 0.95996 0.97122 1.03177 1.22229 0.96800 1.01376 0.97566 1.19620 0.80654 0.90551 0.99623 0.91144 1.21011 1.07245 1.29652 0.95310 0.92487 1.24882 0.97189 0.95367 0.95920 1.69939 1.18194 1.39021 1.25540 0.86633 0.78731 0.78683 0.84504 1.19846 1.21138 1.21149 1.62455 1.11168 1.51635 0.99276 1.21931 0.92780 0.95039 0.97055 1.21615 0.96597 1.01290 0.95863 1.21482 0.98266 0.98940 0.95088 1.21560 0.95866 0.96354 0.93479 1.22798 1.00576 0.97633 0.95035 1.22841 1.01460 0.96404 0.97199 1.22938 1.00481 0.96740 0.97214 1.21759 0.91716 0.97278 0.94257 0.92749 0.92207 0.96748 0.94195 0.95970 0.93122 0.96482 0.90217 0.92981 0.91491 0.92929 0.92782 0.91223 0.90298 0.90265 0.92353 0.92016 0.90718 0.91547 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.98 37.16 0.33 -2.36 16 2 C -0.14 -3.14 4.67 -26.73 -0.12 -3.27 16 3 C 0.20 4.92 2.01 -68.87 -0.14 4.78 16 4 H 0.07 1.95 7.16 -51.93 -0.37 1.58 16 5 C -0.49 -13.13 7.49 -34.44 -0.26 -13.38 16 6 H 0.06 1.53 6.08 -52.49 -0.32 1.21 16 7 C 0.07 1.85 4.35 -17.82 -0.08 1.77 16 8 N -0.89 -24.83 12.31 55.43 0.68 -24.15 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.52 -11.18 4.63 -228.19 -1.06 -12.23 16 14 C 0.06 1.18 4.56 -3.86 -0.02 1.16 16 15 C -0.12 -1.87 6.03 -26.57 -0.16 -2.03 16 16 C -0.10 -1.47 5.18 -26.68 -0.14 -1.61 16 17 C -0.07 -1.11 0.83 -154.37 -0.13 -1.24 16 18 C -0.12 -1.84 7.08 -26.09 -0.18 -2.02 16 19 C -0.14 -1.88 7.73 -25.84 -0.20 -2.08 16 20 C -0.14 -1.78 7.23 -26.10 -0.19 -1.97 16 21 C 0.08 1.46 4.18 -3.91 -0.02 1.44 16 22 H 0.05 1.29 8.11 -51.93 -0.42 0.87 16 23 H 0.06 1.46 6.90 -51.93 -0.36 1.10 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.89 6.77 -51.93 -0.35 0.53 16 26 H 0.02 0.47 6.46 -51.93 -0.34 0.13 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.02 0.33 6.79 -51.93 -0.35 -0.02 16 29 H 0.08 1.70 6.01 -51.93 -0.31 1.39 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.70 8.05 -51.93 -0.42 0.29 16 34 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 35 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 36 H 0.08 1.10 7.62 -51.93 -0.40 0.71 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.07 1.29 7.29 -51.93 -0.38 0.91 16 41 H 0.02 0.43 6.57 -51.93 -0.34 0.09 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -26.79 303.21 -9.41 -36.19 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.28 Total: 0.32 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.30 Total: -20.81 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.37 Total: -36.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.79 -9.41 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.488 kcal (2) G-P(sol) polarization free energy of solvation -26.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds