Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 H 1.09000 * 109.47158 * 56.00620 * 3 2 1 5 5 C 1.50696 * 109.46889 * 295.99944 * 3 2 1 6 6 H 1.07993 * 120.00459 * 275.38980 * 5 3 2 7 7 C 1.37882 * 119.99860 * 95.39628 * 5 3 2 8 8 N 1.31517 * 119.99712 * 7.43520 * 7 5 3 9 9 Si 1.86797 * 120.00097 * 187.44105 * 7 5 3 10 10 H 1.48501 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47320 * 119.99570 * 9 7 5 12 12 H 1.48499 * 109.47142 * 239.99848 * 9 7 5 13 13 N 1.46901 * 109.46773 * 176.00020 * 3 2 1 14 14 C 1.46822 * 110.99831 * 57.88430 * 13 3 2 15 15 C 1.53014 * 109.77063 * 172.44693 * 14 13 3 16 16 C 1.53291 * 109.19474 * 60.93903 * 15 14 13 17 17 C 1.52811 * 108.87985 * 304.48653 * 16 15 14 18 18 C 1.53381 * 113.51745 * 282.95363 * 17 16 15 19 19 C 1.53858 * 86.96064 * 220.11716 * 18 17 16 20 20 C 1.53359 * 113.56687 * 185.03106 * 17 16 15 21 21 C 1.47000 * 111.00353 * 293.70750 * 13 3 2 22 22 H 1.09001 * 109.47575 * 305.85424 * 1 2 3 23 23 H 1.09000 * 109.47050 * 65.85646 * 1 2 3 24 24 H 1.09004 * 109.47638 * 185.85631 * 1 2 3 25 25 H 1.08999 * 109.47171 * 239.99874 * 2 1 3 26 26 H 1.08998 * 109.46469 * 119.99998 * 2 1 3 27 27 H 0.97000 * 119.99676 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.42330 * 292.53942 * 14 13 3 29 29 H 1.08997 * 109.42099 * 52.41498 * 14 13 3 30 30 H 1.08997 * 109.52295 * 180.85184 * 15 14 13 31 31 H 1.08998 * 109.51830 * 300.96951 * 15 14 13 32 32 H 1.08997 * 109.56981 * 64.30676 * 16 15 14 33 33 H 1.09002 * 109.56708 * 184.66657 * 16 15 14 34 34 H 1.09000 * 113.63339 * 334.63485 * 18 17 16 35 35 H 1.08997 * 113.63364 * 105.60511 * 18 17 16 36 36 H 1.08993 * 113.60606 * 270.56378 * 19 18 17 37 37 H 1.09006 * 113.59960 * 139.69088 * 19 18 17 38 38 H 1.09000 * 113.63351 * 254.34705 * 20 17 16 39 39 H 1.09000 * 113.63665 * 25.22850 * 20 17 16 40 40 H 1.08996 * 109.50364 * 303.42753 * 21 13 3 41 41 H 1.09004 * 109.50035 * 63.54466 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 0.8520 5 6 1.6202 2.1237 -1.2770 6 1 2.2190 2.0150 -2.1691 7 6 0.4715 2.8858 -1.3064 8 7 -0.1782 3.1393 -0.1913 9 14 -0.1621 3.5580 -2.9300 10 1 0.7431 3.1340 -4.0282 11 1 -1.5282 3.0337 -3.1836 12 1 -0.2045 5.0411 -2.8689 13 7 3.5058 1.4436 0.0966 14 6 4.1065 0.6885 -1.0100 15 6 5.6265 0.8631 -0.9907 16 6 6.1795 0.3200 0.3319 17 6 5.4696 1.0208 1.4895 18 6 5.9769 2.4454 1.7461 19 6 5.8624 2.1279 3.2472 20 6 6.0276 0.6459 2.8680 21 6 3.9484 0.9216 1.3975 22 1 -0.3634 0.6019 0.8329 23 1 -0.3633 0.4203 -0.9378 24 1 -0.3634 -1.0223 0.1049 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 -0.9865 3.6751 -0.2121 28 1 3.8617 -0.3683 -0.9027 29 1 3.7122 1.0575 -1.9567 30 1 6.0669 0.3134 -1.8225 31 1 5.8728 1.9209 -1.0822 32 1 5.9996 -0.7534 0.3895 33 1 7.2503 0.5161 0.3878 34 1 7.0009 2.6115 1.4115 35 1 5.2892 3.2213 1.4100 36 1 4.8859 2.3640 3.6700 37 1 6.6879 2.5211 3.8407 38 1 5.3806 -0.0245 3.4337 39 1 7.0651 0.3127 2.8436 40 1 3.4965 1.5076 2.1977 41 1 3.6453 -0.1211 1.4935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = -7.048430 kcal Electronic energy + Delta-G solvation = -18277.799158 eV Core-core repulsion = 15770.842741 eV Total energy + Delta-G solvation = -2506.956417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21366 -38.37583 -35.37739 -33.63016 -32.16250 -29.75908 -28.22810 -26.46024 -25.67159 -24.24573 -23.82809 -21.99765 -20.67610 -18.79053 -18.18048 -16.99507 -16.24320 -16.10849 -15.66631 -15.40574 -15.11150 -14.85893 -14.54032 -14.22887 -13.70148 -13.51135 -13.12807 -12.99230 -12.81941 -12.70531 -12.61986 -12.32115 -12.18362 -12.14334 -11.83362 -11.62005 -11.48776 -11.42616 -10.94846 -10.88223 -10.76399 -10.57059 -10.36743 -8.66591 -8.06493 -6.11394 1.39590 1.42941 1.52665 2.45145 3.13706 3.46872 3.75886 3.84251 3.93426 4.11405 4.30888 4.32432 4.39388 4.50166 4.51269 4.65283 4.74663 4.79109 4.81556 4.86286 4.95470 4.97805 5.02604 5.09594 5.11679 5.14719 5.17301 5.29619 5.31786 5.39529 5.43126 5.52024 5.62786 5.67777 5.73758 5.75849 5.80076 6.21382 6.73159 6.88972 7.00527 7.52988 9.01861 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.007435 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.660936 B = 3764.817495 C = 3844.427679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.131 4.131 3 C 0.207 3.793 4 H 0.030 0.970 5 C -0.503 4.503 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.916 5.916 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.537 5.537 14 C 0.063 3.937 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.121 4.121 21 C 0.082 3.918 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.258 0.742 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.940 -5.803 3.403 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.171 4.171 3 C 0.100 3.900 4 H 0.048 0.952 5 C -0.542 4.542 6 H 0.068 0.932 7 C -0.174 4.174 8 N -0.555 5.555 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.261 5.261 14 C -0.065 4.065 15 C -0.148 4.148 16 C -0.132 4.132 17 C -0.081 4.081 18 C -0.161 4.161 19 C -0.176 4.176 20 C -0.159 4.159 21 C -0.046 4.046 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.947 -5.211 3.427 13.477 hybrid contribution -1.354 -0.158 -0.741 1.552 sum 10.593 -5.369 2.685 12.176 Atomic orbital electron populations 1.21301 0.96033 0.98397 1.01045 1.22077 0.96649 1.00164 0.98160 1.19345 0.82689 0.91015 0.96969 0.95231 1.21245 1.07266 1.29765 0.95923 0.93153 1.25522 0.97445 0.95863 0.98599 1.70063 1.18517 1.39802 1.27162 0.85746 0.78261 0.77863 0.81195 1.19394 1.20652 1.21145 1.62300 1.09449 1.53067 1.01237 1.21918 0.95185 0.94368 0.95060 1.21571 0.93831 1.01286 0.98078 1.21479 0.99546 0.98986 0.93204 1.21566 0.93391 0.97317 0.95778 1.22807 1.00763 0.96171 0.96373 1.22805 1.01587 0.96880 0.96291 1.22900 1.01737 0.96399 0.94853 1.21731 0.94398 0.96311 0.92144 0.94743 0.94418 0.93629 0.93906 0.94707 0.93240 0.96499 0.92686 0.90620 0.92449 0.92264 0.89990 0.89140 0.93763 0.91816 0.90046 0.91939 0.88076 0.93402 0.96242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.00 8.98 71.98 0.65 -4.35 16 2 C -0.13 -5.91 4.67 30.59 0.14 -5.77 16 3 C 0.21 10.42 2.01 44.17 0.09 10.51 16 4 H 0.03 1.73 7.16 -2.39 -0.02 1.71 16 5 C -0.50 -27.50 7.49 25.60 0.19 -27.31 16 6 H 0.05 2.77 6.08 -2.91 -0.02 2.75 16 7 C 0.03 1.38 4.35 84.66 0.37 1.75 16 8 N -0.92 -52.82 12.31 21.45 0.26 -52.56 16 9 Si 0.94 44.06 29.54 68.60 2.03 46.09 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.54 -23.44 4.63 -875.86 -4.06 -27.50 16 14 C 0.06 2.43 4.56 86.32 0.39 2.83 16 15 C -0.11 -3.33 6.03 30.70 0.19 -3.14 16 16 C -0.09 -2.46 5.18 30.63 0.16 -2.30 16 17 C -0.08 -2.32 0.83 -52.09 -0.04 -2.36 16 18 C -0.12 -3.51 7.08 31.01 0.22 -3.29 16 19 C -0.14 -3.40 7.73 31.17 0.24 -3.16 16 20 C -0.12 -2.80 7.23 31.00 0.22 -2.57 16 21 C 0.08 3.08 4.18 86.19 0.36 3.44 16 22 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 23 H 0.04 1.85 6.90 -2.39 -0.02 1.83 16 24 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.04 1.89 6.77 -2.39 -0.02 1.88 16 26 H 0.03 1.46 6.46 -2.39 -0.02 1.45 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 28 H 0.02 0.65 6.79 -2.39 -0.02 0.63 16 29 H 0.05 2.37 6.01 -2.39 -0.01 2.36 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.73 8.05 -2.39 -0.02 1.72 16 34 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 35 H 0.04 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.06 1.75 7.62 -2.39 -0.02 1.73 16 37 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 39 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 40 H 0.05 1.92 7.29 -2.39 -0.02 1.91 16 41 H 0.02 0.73 6.57 -2.38 -0.02 0.72 16 Total: -1.00 -58.97 303.21 2.38 -56.59 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.11 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.18 Total: -35.73 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.79 Total: -80.06 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -58.97 2.38 -56.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.540 kcal (2) G-P(sol) polarization free energy of solvation -58.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds