Wall clock time and date at job start Sun Mar 29 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47046 * 2 1 4 4 H 1.09001 * 109.47260 * 55.00034 * 3 2 1 5 5 C 1.50703 * 109.47302 * 175.00126 * 3 2 1 6 6 H 1.08001 * 119.99944 * 120.00007 * 5 3 2 7 7 C 1.37877 * 119.99905 * 299.99984 * 5 3 2 8 8 N 1.31516 * 119.99974 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00276 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47128 * 59.99785 * 9 7 5 11 11 H 1.48495 * 109.47150 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46793 * 299.99914 * 9 7 5 13 13 N 1.46902 * 109.47269 * 295.00107 * 3 2 1 14 14 C 1.48824 * 111.00067 * 175.00042 * 13 3 2 15 15 C 1.52548 * 105.73023 * 118.87609 * 14 13 3 16 16 H 1.08999 * 110.01791 * 273.12838 * 15 14 13 17 17 C 1.51531 * 116.98802 * 146.69447 * 15 14 13 18 18 C 1.53894 * 107.06601 * 182.52256 * 17 15 14 19 19 C 1.52537 * 112.34407 * 55.92284 * 18 17 15 20 20 C 1.53777 * 111.64283 * 306.40510 * 19 18 17 21 21 C 1.51710 * 107.09320 * 57.68358 * 20 19 18 22 22 H 1.09001 * 111.41438 * 56.14548 * 21 20 19 23 23 C 1.49325 * 111.02435 * 295.17819 * 13 3 2 24 24 H 1.08999 * 109.47267 * 299.99893 * 1 2 3 25 25 H 1.08997 * 109.47142 * 60.00009 * 1 2 3 26 26 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47267 * 240.00107 * 2 1 3 28 28 H 1.08997 * 109.47142 * 119.99990 * 2 1 3 29 29 H 0.97004 * 120.00380 * 179.97438 * 8 7 5 30 30 H 1.09002 * 110.21177 * 359.78748 * 14 13 3 31 31 H 1.08999 * 110.20723 * 237.96334 * 14 13 3 32 32 H 1.09003 * 109.93011 * 301.17859 * 17 15 14 33 33 H 1.09002 * 109.92846 * 62.38289 * 17 15 14 34 34 H 1.08998 * 108.26732 * 295.43131 * 18 17 15 35 35 H 1.09003 * 109.08524 * 176.96150 * 18 17 15 36 36 H 1.08998 * 109.04511 * 185.85123 * 19 18 17 37 37 H 1.08998 * 108.99102 * 66.92558 * 19 18 17 38 38 H 1.09000 * 109.92796 * 298.28783 * 20 19 18 39 39 H 1.08999 * 109.99892 * 177.11798 * 20 19 18 40 40 H 1.09001 * 110.64409 * 94.21452 * 23 13 3 41 41 H 1.09002 * 110.87221 * 331.10725 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4993 2.2815 1.3822 11 1 6.3977 0.2168 2.6503 12 1 6.5974 0.1474 0.2349 13 7 1.6513 2.0993 -1.2552 14 6 2.0255 3.5396 -1.2416 15 6 3.0047 3.7234 -2.3968 16 1 4.0195 3.5055 -2.0640 17 6 2.9715 5.0539 -3.1213 18 6 3.9926 4.9685 -4.2696 19 6 3.7233 3.7890 -5.1986 20 6 3.6286 2.4653 -4.4217 21 6 2.5232 2.6286 -3.3955 22 1 1.5817 2.9115 -3.8663 23 6 2.3223 1.4585 -2.4252 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0610 2.9500 30 1 2.5055 3.7951 -0.2969 31 1 1.1422 4.1596 -1.3944 32 1 1.9778 5.2273 -3.5344 33 1 3.2347 5.8579 -2.4340 34 1 4.9865 4.8599 -3.8355 35 1 3.9570 5.8920 -4.8476 36 1 4.5318 3.7174 -5.9260 37 1 2.7848 3.9599 -5.7259 38 1 4.5742 2.2606 -3.9198 39 1 3.3856 1.6498 -5.1029 40 1 1.6794 0.6975 -2.8676 41 1 3.2815 1.0293 -2.1357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:44 Heat of formation + Delta-G solvation = -20.518299 kcal Electronic energy + Delta-G solvation = -18290.316467 eV Core-core repulsion = 15782.775953 eV Total energy + Delta-G solvation = -2507.540514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57295 -36.18858 -33.22693 -31.48895 -31.15037 -29.14640 -26.60893 -26.27885 -23.53127 -21.98734 -20.82357 -20.26642 -19.56961 -18.80578 -16.27275 -15.13412 -14.63387 -14.49825 -14.22427 -14.08191 -13.49085 -13.05457 -12.57833 -12.32286 -12.20504 -12.15814 -11.58477 -11.46084 -11.37338 -11.08531 -10.88203 -10.78533 -10.58443 -10.48393 -10.39440 -10.06734 -9.92054 -9.78115 -9.54062 -9.47214 -9.25134 -8.94537 -8.32592 -7.09451 -5.95607 -4.08285 3.28069 3.33602 3.35822 4.40959 4.85424 4.93713 5.00560 5.19164 5.29703 5.45777 5.58080 5.67758 5.72291 5.78043 5.88651 6.04555 6.19639 6.22000 6.25421 6.35220 6.36357 6.40664 6.42564 6.51550 6.52551 6.67486 6.70750 6.75210 6.84696 6.96718 7.10637 7.12986 7.23578 7.39059 7.65646 7.78914 8.03298 8.21714 8.32018 8.50165 9.02553 9.58240 11.03517 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.009228 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.880685 B = 3033.401003 C = 3752.081823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.207 3.793 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.106 4.106 21 C -0.100 4.100 22 H 0.073 0.927 23 C 0.052 3.948 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 5.493 -10.565 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.100 3.900 4 H 0.054 0.946 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.248 5.248 14 C -0.070 4.070 15 C -0.130 4.130 16 H 0.091 0.909 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.119 4.119 22 H 0.091 0.909 23 C -0.076 4.076 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.251 5.334 -10.393 11.749 hybrid contribution 2.040 0.015 0.318 2.065 sum 0.789 5.349 -10.075 11.435 Atomic orbital electron populations 1.21707 0.98953 0.98318 1.00543 1.21551 0.92184 0.99256 1.01790 1.19439 0.92995 0.91248 0.86339 0.94597 1.21758 0.92803 1.37867 1.05338 0.92451 1.24921 0.97608 0.95187 0.95788 1.69868 1.34768 1.38366 1.09424 0.86785 0.86487 0.78173 0.77333 1.20409 1.21286 1.20382 1.64851 1.54646 1.00835 1.04493 1.22377 0.95861 0.91461 0.97339 1.22165 1.00447 0.94706 0.95665 0.90941 1.21322 0.98951 0.97379 0.96500 1.21531 0.99559 0.97563 0.96791 1.21487 1.01018 0.94924 0.97695 1.21359 0.99019 0.96406 0.97653 1.22123 0.97482 0.97076 0.95259 0.90898 1.22791 0.98840 0.95240 0.90711 0.94287 0.93396 0.95692 0.95112 0.89102 0.92908 0.92099 0.92844 0.92253 0.92166 0.92581 0.92749 0.92707 0.92544 0.91876 0.92315 0.92469 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.16 0.36 -2.52 16 2 C -0.11 -2.63 5.19 -26.74 -0.14 -2.77 16 3 C 0.21 5.12 1.56 -68.87 -0.11 5.01 16 4 H 0.04 1.00 8.13 -51.93 -0.42 0.58 16 5 C -0.54 -14.22 6.53 -34.44 -0.22 -14.44 16 6 H 0.06 1.51 5.50 -52.49 -0.29 1.22 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.88 21.11 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.52 -11.23 4.69 -224.34 -1.05 -12.28 16 14 C 0.06 1.13 6.00 -2.99 -0.02 1.11 16 15 C -0.11 -1.88 2.02 -90.09 -0.18 -2.06 16 16 H 0.07 1.39 7.12 -51.93 -0.37 1.02 16 17 C -0.10 -1.43 5.74 -27.01 -0.16 -1.59 16 18 C -0.12 -1.45 5.82 -26.50 -0.15 -1.60 16 19 C -0.11 -1.38 5.86 -26.56 -0.16 -1.54 16 20 C -0.11 -1.51 5.68 -26.98 -0.15 -1.66 16 21 C -0.10 -1.64 2.55 -89.60 -0.23 -1.87 16 22 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 23 C 0.05 1.02 4.72 -2.30 -0.01 1.01 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.73 7.16 -51.93 -0.37 0.35 16 28 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.06 1.32 7.21 -51.93 -0.37 0.95 16 31 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 41 H 0.07 1.45 6.00 -51.93 -0.31 1.14 16 LS Contribution 302.26 15.07 4.56 4.56 Total: -1.00 -26.79 302.26 -9.62 -36.40 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.46 Total: 0.74 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.26 Total: -21.18 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.43 Total: -36.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.79 -9.62 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.884 kcal (2) G-P(sol) polarization free energy of solvation -26.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds