Wall clock time and date at job start Sun Mar 29 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47046 * 2 1 4 4 H 1.09001 * 109.47260 * 55.00034 * 3 2 1 5 5 C 1.50703 * 109.47302 * 175.00126 * 3 2 1 6 6 H 1.08001 * 119.99944 * 120.00007 * 5 3 2 7 7 C 1.37877 * 119.99905 * 299.99984 * 5 3 2 8 8 N 1.31516 * 119.99974 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00276 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47128 * 59.99785 * 9 7 5 11 11 H 1.48495 * 109.47150 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46793 * 299.99914 * 9 7 5 13 13 N 1.46902 * 109.47269 * 295.00107 * 3 2 1 14 14 C 1.48824 * 111.00067 * 175.00042 * 13 3 2 15 15 C 1.52548 * 105.73023 * 118.87609 * 14 13 3 16 16 H 1.08999 * 110.01791 * 273.12838 * 15 14 13 17 17 C 1.51531 * 116.98802 * 146.69447 * 15 14 13 18 18 C 1.53894 * 107.06601 * 182.52256 * 17 15 14 19 19 C 1.52537 * 112.34407 * 55.92284 * 18 17 15 20 20 C 1.53777 * 111.64283 * 306.40510 * 19 18 17 21 21 C 1.51710 * 107.09320 * 57.68358 * 20 19 18 22 22 H 1.09001 * 111.41438 * 56.14548 * 21 20 19 23 23 C 1.49325 * 111.02435 * 295.17819 * 13 3 2 24 24 H 1.08999 * 109.47267 * 299.99893 * 1 2 3 25 25 H 1.08997 * 109.47142 * 60.00009 * 1 2 3 26 26 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47267 * 240.00107 * 2 1 3 28 28 H 1.08997 * 109.47142 * 119.99990 * 2 1 3 29 29 H 0.97004 * 120.00380 * 179.97438 * 8 7 5 30 30 H 1.09002 * 110.21177 * 359.78748 * 14 13 3 31 31 H 1.08999 * 110.20723 * 237.96334 * 14 13 3 32 32 H 1.09003 * 109.93011 * 301.17859 * 17 15 14 33 33 H 1.09002 * 109.92846 * 62.38289 * 17 15 14 34 34 H 1.08998 * 108.26732 * 295.43131 * 18 17 15 35 35 H 1.09003 * 109.08524 * 176.96150 * 18 17 15 36 36 H 1.08998 * 109.04511 * 185.85123 * 19 18 17 37 37 H 1.08998 * 108.99102 * 66.92558 * 19 18 17 38 38 H 1.09000 * 109.92796 * 298.28783 * 20 19 18 39 39 H 1.08999 * 109.99892 * 177.11798 * 20 19 18 40 40 H 1.09001 * 110.64409 * 94.21452 * 23 13 3 41 41 H 1.09002 * 110.87221 * 331.10725 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4993 2.2815 1.3822 11 1 6.3977 0.2168 2.6503 12 1 6.5974 0.1474 0.2349 13 7 1.6513 2.0993 -1.2552 14 6 2.0255 3.5396 -1.2416 15 6 3.0047 3.7234 -2.3968 16 1 4.0195 3.5055 -2.0640 17 6 2.9715 5.0539 -3.1213 18 6 3.9926 4.9685 -4.2696 19 6 3.7233 3.7890 -5.1986 20 6 3.6286 2.4653 -4.4217 21 6 2.5232 2.6286 -3.3955 22 1 1.5817 2.9115 -3.8663 23 6 2.3223 1.4585 -2.4252 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0610 2.9500 30 1 2.5055 3.7951 -0.2969 31 1 1.1422 4.1596 -1.3944 32 1 1.9778 5.2273 -3.5344 33 1 3.2347 5.8579 -2.4340 34 1 4.9865 4.8599 -3.8355 35 1 3.9570 5.8920 -4.8476 36 1 4.5318 3.7174 -5.9260 37 1 2.7848 3.9599 -5.7259 38 1 4.5742 2.2606 -3.9198 39 1 3.3856 1.6498 -5.1029 40 1 1.6794 0.6975 -2.8676 41 1 3.2815 1.0293 -2.1357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:44 Heat of formation + Delta-G solvation = -34.768350 kcal Electronic energy + Delta-G solvation = -18290.934396 eV Core-core repulsion = 15782.775953 eV Total energy + Delta-G solvation = -2508.158443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01076 -37.75792 -34.95560 -33.39714 -32.39896 -30.67288 -28.17667 -28.04358 -25.26396 -23.56057 -22.07195 -21.72840 -20.96646 -20.55879 -18.30127 -16.96813 -16.11174 -15.98717 -15.60868 -15.41232 -14.91452 -14.82552 -14.06989 -14.00001 -13.72429 -13.60432 -13.19788 -13.01075 -12.81090 -12.69826 -12.61233 -12.54032 -12.23223 -11.88564 -11.84767 -11.63875 -11.49078 -11.35314 -11.26927 -10.97876 -10.85112 -10.59746 -10.41923 -8.92732 -8.02505 -6.23792 1.35379 1.36008 1.43187 2.38735 3.15163 3.50151 3.59884 3.85235 3.92851 4.25166 4.36874 4.48386 4.52915 4.60152 4.65250 4.71678 4.75845 4.77792 4.79757 4.90895 5.00835 5.03283 5.08354 5.14762 5.19605 5.22655 5.30962 5.33667 5.39817 5.44321 5.48592 5.50325 5.54508 5.62228 5.73800 5.79071 6.05740 6.21864 6.41632 6.57029 6.97689 7.45707 8.92610 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.009228 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.880685 B = 3033.401003 C = 3752.081823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.056 3.944 15 C -0.104 4.104 16 H 0.044 0.956 17 C -0.099 4.099 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.105 4.105 21 C -0.088 4.088 22 H 0.087 0.913 23 C 0.052 3.948 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 6.383 -12.925 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.016 0.984 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.123 4.123 16 H 0.062 0.938 17 C -0.137 4.137 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.107 4.107 22 H 0.105 0.895 23 C -0.076 4.076 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.220 6.233 -12.768 14.260 hybrid contribution 1.994 -0.258 1.068 2.277 sum 0.775 5.975 -11.700 13.161 Atomic orbital electron populations 1.21567 0.96343 0.99784 1.00603 1.21397 0.94486 0.98264 1.00135 1.19183 0.91900 0.91487 0.86759 0.98446 1.21976 0.93869 1.37220 1.05071 0.92957 1.25621 1.01596 0.95176 0.95684 1.70000 1.36223 1.39174 1.09821 0.85857 0.81766 0.78161 0.77362 1.20114 1.20913 1.19886 1.64806 1.54806 1.01755 1.03622 1.22415 0.97148 0.90572 0.97091 1.22056 0.97901 0.97326 0.95018 0.93763 1.21314 1.00398 0.95150 0.96822 1.21540 0.98357 0.98979 0.96432 1.21470 1.02530 0.93114 0.97553 1.21361 0.97118 0.98542 0.97305 1.22071 0.98934 0.94699 0.94989 0.89496 1.22778 0.97215 0.96662 0.90928 0.94958 0.92482 0.93511 0.95287 0.92060 0.93023 0.95281 0.91015 0.90864 0.91876 0.93541 0.90265 0.90950 0.91091 0.93618 0.90956 0.91847 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 9.80 71.98 0.71 -4.50 16 2 C -0.10 -5.12 5.19 30.59 0.16 -4.97 16 3 C 0.21 10.99 1.56 44.17 0.07 11.06 16 4 H 0.00 -0.14 8.13 -2.39 -0.02 -0.16 16 5 C -0.54 -29.62 6.53 25.60 0.17 -29.45 16 6 H 0.05 2.86 5.50 -2.91 -0.02 2.84 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -53.02 11.29 21.45 0.24 -52.78 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.20 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.53 -22.77 4.69 -863.67 -4.05 -26.83 16 14 C 0.06 2.20 6.00 85.78 0.52 2.71 16 15 C -0.10 -3.44 2.02 -10.45 -0.02 -3.47 16 16 H 0.04 1.72 7.12 -2.39 -0.02 1.70 16 17 C -0.10 -2.49 5.74 30.41 0.17 -2.32 16 18 C -0.12 -2.49 5.82 30.74 0.18 -2.31 16 19 C -0.11 -2.24 5.86 30.70 0.18 -2.06 16 20 C -0.11 -2.75 5.68 30.43 0.17 -2.58 16 21 C -0.09 -2.72 2.55 -10.13 -0.03 -2.75 16 22 H 0.09 2.51 8.11 -2.39 -0.02 2.49 16 23 C 0.05 2.03 4.72 85.94 0.41 2.43 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.39 7.16 -2.39 -0.02 1.37 16 28 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.03 1.31 7.21 -2.39 -0.02 1.29 16 31 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 32 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.04 1.35 7.99 -2.39 -0.02 1.33 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 41 H 0.04 1.64 6.00 -2.39 -0.01 1.63 16 Total: -1.00 -59.06 302.26 2.31 -56.75 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.96 Total: 13.35 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.13 Total: -36.70 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.81 Total: -79.60 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -59.06 2.31 -56.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.985 kcal (2) G-P(sol) polarization free energy of solvation -59.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds