Wall clock time and date at job start Sun Mar 29 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46923 * 2 1 4 4 C 1.53003 * 109.46812 * 119.99548 * 2 1 3 5 5 C 1.53000 * 109.46812 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47272 * 300.00328 * 5 4 2 7 7 N 1.46900 * 109.46703 * 180.02562 * 6 5 4 8 8 C 1.47969 * 110.99621 * 175.00139 * 7 6 5 9 9 C 1.53935 * 86.17592 * 222.41344 * 8 7 6 10 10 C 1.50706 * 113.72793 * 138.07984 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.71973 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.47957 * 111.00525 * 75.64185 * 7 6 5 19 19 C 1.52995 * 109.46893 * 60.00196 * 6 5 4 20 20 C 1.52995 * 109.47087 * 240.00009 * 2 1 3 21 21 H 1.08997 * 109.47532 * 300.00089 * 1 2 3 22 22 H 1.08999 * 109.47050 * 60.00291 * 1 2 3 23 23 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47428 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47423 * 299.99981 * 3 2 1 26 26 H 1.09007 * 109.47540 * 59.99932 * 3 2 1 27 27 H 1.09005 * 109.46734 * 60.00336 * 4 2 1 28 28 H 1.08997 * 109.47368 * 300.00463 * 4 2 1 29 29 H 1.09003 * 109.47056 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47130 * 60.00158 * 5 4 2 31 31 H 1.08993 * 109.46904 * 299.99968 * 6 5 4 32 32 H 1.09002 * 113.75573 * 108.09687 * 8 7 6 33 33 H 1.08999 * 113.75379 * 336.73484 * 8 7 6 34 34 H 1.08999 * 113.73231 * 269.24916 * 9 8 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 36 36 H 1.09003 * 113.75874 * 23.26182 * 18 7 6 37 37 H 1.08997 * 113.75781 * 251.89846 * 18 7 6 38 38 H 1.08993 * 109.47532 * 60.00156 * 19 6 5 39 39 H 1.09002 * 109.47165 * 180.02562 * 19 6 5 40 40 H 1.09002 * 109.47050 * 299.99634 * 20 2 1 41 41 H 1.08999 * 109.47421 * 59.99927 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7217 1.2490 6 6 4.0795 -1.4434 -0.0003 7 7 5.5485 -1.4444 -0.0001 8 6 6.0782 -2.2371 -1.1317 9 6 7.0996 -2.7984 -0.1261 10 6 7.3350 -4.2806 -0.2641 11 1 6.8023 -4.8443 -1.0156 12 6 8.2266 -4.9177 0.5726 13 7 8.8712 -4.2323 1.4914 14 14 8.5189 -6.7547 0.4011 15 1 9.0318 -7.0493 -0.9609 16 1 9.5148 -7.1939 1.4114 17 1 7.2420 -7.4815 0.6171 18 6 6.0781 -2.4323 0.9656 19 6 3.5695 -0.7222 -1.2494 20 6 2.0400 -0.7212 -1.2492 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 -1.7489 1.2493 28 1 1.6765 -0.2074 2.1393 29 1 3.9333 -1.2359 2.1388 30 1 3.9336 0.3057 1.2487 31 1 3.7158 -2.4709 0.0000 32 1 6.5253 -1.6321 -1.9204 33 1 5.3794 -2.9829 -1.5105 34 1 8.0248 -2.2244 -0.0739 35 1 9.4981 -4.6807 2.0803 36 1 5.3793 -3.2353 1.2002 37 1 6.5251 -1.9833 1.8525 38 1 3.9332 0.3053 -1.2497 39 1 3.9321 -1.2365 -2.1395 40 1 1.6767 -1.7489 -1.2492 41 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255301656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:13 Heat of formation + Delta-G solvation = 1.243053 kcal Electronic energy + Delta-G solvation = -17699.821909 eV Core-core repulsion = 15193.225037 eV Total energy + Delta-G solvation = -2506.596871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85302 -37.91498 -33.20437 -31.98152 -30.68308 -27.97069 -27.31793 -25.46397 -25.01097 -23.01773 -22.17387 -20.19594 -18.59737 -18.18503 -16.57678 -15.25729 -14.92364 -14.72159 -14.41401 -14.07084 -13.83708 -13.66576 -12.82774 -12.58957 -12.43115 -12.14027 -11.83540 -11.81348 -11.60027 -11.36927 -11.11287 -11.07520 -10.90797 -10.75117 -10.59866 -10.40057 -10.24684 -10.05324 -9.68908 -9.49149 -9.03690 -8.90885 -8.40511 -7.78576 -6.02279 -4.06583 3.31296 3.36313 3.38578 4.41985 4.66746 4.71763 4.82966 5.08575 5.24636 5.30171 5.32886 5.48901 5.55161 5.66493 5.72557 5.74161 5.75524 5.86452 5.91718 5.99267 6.03478 6.09269 6.17875 6.20644 6.25491 6.39349 6.40683 6.42321 6.51664 6.55086 6.68567 6.72055 6.79840 6.93481 7.19450 7.33712 7.76274 7.95855 8.19291 8.41331 8.95880 9.57969 11.07140 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047122 B = 0.005188 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.059508 B = 5395.573346 C = 5415.778296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.108 4.108 6 C 0.054 3.946 7 N -0.488 5.488 8 C 0.000 4.000 9 C 0.038 3.962 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.015 3.985 19 C -0.111 4.111 20 C -0.105 4.105 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 8.066 -2.291 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.055 4.055 7 N -0.211 5.211 8 C -0.128 4.128 9 C 0.019 3.981 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.114 4.114 19 C -0.149 4.149 20 C -0.143 4.143 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.747 8.748 -2.069 16.425 hybrid contribution -0.220 -1.923 -0.036 1.936 sum -13.967 6.825 -2.105 15.687 Atomic orbital electron populations 1.21868 0.95149 1.01453 1.01298 1.20527 0.94615 0.95694 0.95649 1.21970 1.02162 0.95101 1.00920 1.21582 0.96088 1.00008 0.96703 1.21496 0.94066 1.01304 0.97712 1.22097 0.91334 0.97369 0.94687 1.68502 1.05998 1.40631 1.05957 1.23998 0.98783 0.94886 0.95166 1.20318 0.93008 0.95781 0.89005 1.21067 1.24114 0.92801 1.17613 0.92647 1.25004 0.95349 0.98039 0.95197 1.69957 1.27066 1.35794 1.19637 0.86701 0.77977 0.85697 0.77875 1.20176 1.21245 1.20312 1.24001 0.98293 0.91802 0.97324 1.21553 0.94319 1.01344 0.97660 1.21565 0.96002 1.00021 0.96743 0.92924 0.92958 0.92885 0.91429 0.93192 0.93157 0.92341 0.92301 0.92222 0.91302 0.94400 0.91943 0.92970 0.92305 0.92870 0.93069 0.91683 0.91300 0.92286 0.92343 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.47 37.16 0.31 -1.04 16 2 C -0.06 -0.73 0.77 -154.51 -0.12 -0.85 16 3 C -0.14 -1.58 7.78 37.15 0.29 -1.29 16 4 C -0.11 -1.33 4.73 -26.73 -0.13 -1.45 16 5 C -0.11 -1.64 5.06 -26.73 -0.14 -1.78 16 6 C 0.05 0.93 1.54 -67.71 -0.10 0.83 16 7 N -0.49 -10.01 5.98 -230.36 -1.38 -11.38 16 8 C 0.00 0.01 6.40 -2.76 -0.02 -0.01 16 9 C 0.04 0.97 3.61 -90.84 -0.33 0.64 16 10 C -0.52 -14.28 8.77 -34.44 -0.30 -14.59 16 11 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.81 13.27 55.43 0.74 -25.07 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.01 0.34 6.91 -2.77 -0.02 0.32 16 19 C -0.11 -1.63 4.91 -26.76 -0.13 -1.77 16 20 C -0.11 -1.29 4.73 -26.76 -0.13 -1.42 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.83 4.81 -51.93 -0.25 0.58 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.98 7.73 -51.93 -0.40 0.57 16 30 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 31 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.11 7.80 -51.93 -0.40 0.71 16 34 H 0.06 1.64 8.13 -51.93 -0.42 1.22 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 1.22 7.65 -51.93 -0.40 0.83 16 37 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 39 H 0.06 0.90 7.33 -51.93 -0.38 0.52 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -27.85 308.91 -9.43 -37.28 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.52 Total: -1.07 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.90 Total: -20.65 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.64 Total: -36.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.85 -9.43 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255301656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.521 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds