Wall clock time and date at job start Sun Mar 29 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46923 * 2 1 4 4 C 1.53003 * 109.46812 * 119.99548 * 2 1 3 5 5 C 1.53000 * 109.46812 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47272 * 300.00328 * 5 4 2 7 7 N 1.46900 * 109.46703 * 180.02562 * 6 5 4 8 8 C 1.47969 * 110.99621 * 175.00139 * 7 6 5 9 9 C 1.53935 * 86.17592 * 222.41344 * 8 7 6 10 10 C 1.50706 * 113.72793 * 138.07984 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.71973 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.47957 * 111.00525 * 75.64185 * 7 6 5 19 19 C 1.52995 * 109.46893 * 60.00196 * 6 5 4 20 20 C 1.52995 * 109.47087 * 240.00009 * 2 1 3 21 21 H 1.08997 * 109.47532 * 300.00089 * 1 2 3 22 22 H 1.08999 * 109.47050 * 60.00291 * 1 2 3 23 23 H 1.09005 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47428 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47423 * 299.99981 * 3 2 1 26 26 H 1.09007 * 109.47540 * 59.99932 * 3 2 1 27 27 H 1.09005 * 109.46734 * 60.00336 * 4 2 1 28 28 H 1.08997 * 109.47368 * 300.00463 * 4 2 1 29 29 H 1.09003 * 109.47056 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47130 * 60.00158 * 5 4 2 31 31 H 1.08993 * 109.46904 * 299.99968 * 6 5 4 32 32 H 1.09002 * 113.75573 * 108.09687 * 8 7 6 33 33 H 1.08999 * 113.75379 * 336.73484 * 8 7 6 34 34 H 1.08999 * 113.73231 * 269.24916 * 9 8 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 36 36 H 1.09003 * 113.75874 * 23.26182 * 18 7 6 37 37 H 1.08997 * 113.75781 * 251.89846 * 18 7 6 38 38 H 1.08993 * 109.47532 * 60.00156 * 19 6 5 39 39 H 1.09002 * 109.47165 * 180.02562 * 19 6 5 40 40 H 1.09002 * 109.47050 * 299.99634 * 20 2 1 41 41 H 1.08999 * 109.47421 * 59.99927 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7217 1.2490 6 6 4.0795 -1.4434 -0.0003 7 7 5.5485 -1.4444 -0.0001 8 6 6.0782 -2.2371 -1.1317 9 6 7.0996 -2.7984 -0.1261 10 6 7.3350 -4.2806 -0.2641 11 1 6.8023 -4.8443 -1.0156 12 6 8.2266 -4.9177 0.5726 13 7 8.8712 -4.2323 1.4914 14 14 8.5189 -6.7547 0.4011 15 1 9.0318 -7.0493 -0.9609 16 1 9.5148 -7.1939 1.4114 17 1 7.2420 -7.4815 0.6171 18 6 6.0781 -2.4323 0.9656 19 6 3.5695 -0.7222 -1.2494 20 6 2.0400 -0.7212 -1.2492 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 -1.7489 1.2493 28 1 1.6765 -0.2074 2.1393 29 1 3.9333 -1.2359 2.1388 30 1 3.9336 0.3057 1.2487 31 1 3.7158 -2.4709 0.0000 32 1 6.5253 -1.6321 -1.9204 33 1 5.3794 -2.9829 -1.5105 34 1 8.0248 -2.2244 -0.0739 35 1 9.4981 -4.6807 2.0803 36 1 5.3793 -3.2353 1.2002 37 1 6.5251 -1.9833 1.8525 38 1 3.9332 0.3053 -1.2497 39 1 3.9321 -1.2365 -2.1395 40 1 1.6767 -1.7489 -1.2492 41 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255301656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:13 Heat of formation + Delta-G solvation = -14.724512 kcal Electronic energy + Delta-G solvation = -17700.514314 eV Core-core repulsion = 15193.225037 eV Total energy + Delta-G solvation = -2507.289277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24419 -39.34854 -34.95263 -33.60147 -31.80555 -29.62953 -28.13672 -27.05455 -26.79786 -24.61467 -23.35619 -21.58089 -20.43499 -19.31115 -18.56504 -16.91955 -16.32121 -16.22572 -15.70362 -15.66888 -15.11263 -14.83568 -14.22905 -14.03804 -13.74279 -13.36456 -13.18893 -13.16434 -12.89072 -12.81176 -12.73878 -12.55475 -12.35478 -12.16844 -12.02271 -11.71780 -11.52827 -11.38239 -11.08264 -11.01602 -10.80154 -10.67991 -10.48435 -9.55845 -8.15762 -6.27607 1.41285 1.42744 1.50767 2.41324 3.13355 3.20030 3.69034 3.82226 3.96066 4.10467 4.18234 4.30762 4.44811 4.48862 4.51577 4.57433 4.63535 4.68578 4.71446 4.81265 4.89152 4.90367 4.95642 5.06571 5.08085 5.12628 5.15477 5.17249 5.22324 5.25907 5.28756 5.38368 5.45683 5.53347 5.61913 5.68003 5.69814 5.84739 6.29325 6.45817 6.80982 7.40692 8.93582 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047122 B = 0.005188 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.059508 B = 5395.573346 C = 5415.778296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.104 4.104 6 C 0.053 3.947 7 N -0.484 5.484 8 C 0.017 3.983 9 C 0.019 3.981 10 C -0.535 4.535 11 H 0.056 0.944 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.027 3.973 19 C -0.105 4.105 20 C -0.101 4.101 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 8.235 -3.076 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.056 4.056 7 N -0.207 5.207 8 C -0.112 4.112 9 C 0.000 4.000 10 C -0.573 4.573 11 H 0.074 0.926 12 C -0.184 4.184 13 N -0.560 5.560 14 Si 0.782 3.218 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.102 4.102 19 C -0.143 4.143 20 C -0.139 4.139 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.731 8.925 -2.867 18.313 hybrid contribution 0.407 -1.927 0.207 1.981 sum -15.324 6.998 -2.660 17.055 Atomic orbital electron populations 1.21822 0.93354 1.01863 1.02324 1.20527 0.95986 0.95565 0.94230 1.21948 1.01053 0.94959 1.02029 1.21564 0.93642 1.00394 0.98312 1.21462 0.96310 1.00605 0.95804 1.22198 0.88839 0.97324 0.97253 1.68454 1.08729 1.39112 1.04399 1.23822 0.97435 0.94922 0.94978 1.20313 0.92859 0.94864 0.91949 1.21395 1.24317 0.93931 1.17631 0.92554 1.25824 0.95078 1.02723 0.94772 1.70086 1.27738 1.37695 1.20495 0.85628 0.78045 0.79990 0.78112 1.19306 1.20876 1.19557 1.23687 0.97672 0.92137 0.96706 1.21509 0.96355 1.00736 0.95694 1.21553 0.93762 1.00422 0.98163 0.92061 0.91837 0.92819 0.93095 0.91967 0.92253 0.92634 0.90841 0.94057 0.91262 0.95863 0.90596 0.92595 0.95583 0.92824 0.93941 0.93291 0.91171 0.92924 0.92553 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.47 71.98 0.61 -1.56 16 2 C -0.06 -1.26 0.77 -52.18 -0.04 -1.30 16 3 C -0.14 -2.73 7.78 71.98 0.56 -2.17 16 4 C -0.10 -2.35 4.73 30.60 0.14 -2.21 16 5 C -0.10 -3.11 5.06 30.60 0.15 -2.96 16 6 C 0.05 1.79 1.54 44.92 0.07 1.86 16 7 N -0.48 -20.06 5.98 -882.71 -5.28 -25.34 16 8 C 0.02 0.74 6.40 86.40 0.55 1.29 16 9 C 0.02 1.01 3.61 -10.89 -0.04 0.97 16 10 C -0.53 -29.98 8.77 25.60 0.22 -29.75 16 11 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 12 C 0.02 0.87 5.46 84.66 0.46 1.33 16 13 N -0.92 -54.85 13.27 21.45 0.28 -54.57 16 14 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.03 1.32 6.91 86.40 0.60 1.91 16 19 C -0.11 -2.94 4.91 30.58 0.15 -2.79 16 20 C -0.10 -2.22 4.73 30.58 0.14 -2.08 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.05 1.14 4.81 -2.39 -0.01 1.13 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.36 7.73 -2.39 -0.02 1.35 16 30 H 0.07 2.07 6.43 -2.39 -0.02 2.05 16 31 H 0.02 0.87 7.68 -2.39 -0.02 0.85 16 32 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.06 2.37 7.80 -2.39 -0.02 2.35 16 34 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.04 2.10 7.65 -2.39 -0.02 2.08 16 37 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16 39 H 0.05 1.53 7.33 -2.39 -0.02 1.51 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -60.09 308.91 1.58 -58.50 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.96 Total: 13.04 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.59 Total: -37.45 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -4.99 Total: -79.90 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.09 1.58 -58.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255301656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.780 kcal (2) G-P(sol) polarization free energy of solvation -60.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds