Wall clock time and date at job start Sun Mar 29 2020 21:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47440 * 110.99828 * 2 1 4 4 C 1.54309 * 107.23612 * 123.26156 * 3 2 1 5 5 C 1.55429 * 103.04836 * 22.27947 * 4 3 2 6 6 H 1.09008 * 110.99808 * 82.38764 * 5 4 3 7 7 N 1.46896 * 111.11109 * 206.29625 * 5 4 3 8 8 C 1.46900 * 111.00180 * 297.58281 * 7 5 4 9 9 C 1.50697 * 109.47112 * 165.73142 * 8 7 5 10 10 H 1.08001 * 120.00050 * 357.83300 * 9 8 7 11 11 C 1.37873 * 120.00258 * 177.83444 * 9 8 7 12 12 N 1.31509 * 120.00418 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99813 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47008 * 89.99794 * 13 11 9 15 15 H 1.48494 * 109.47402 * 209.99985 * 13 11 9 16 16 H 1.48503 * 109.46779 * 330.00521 * 13 11 9 17 17 C 1.46903 * 111.00178 * 173.62635 * 7 5 4 18 18 C 1.52998 * 109.47035 * 60.65915 * 17 7 5 19 19 C 1.47203 * 109.47005 * 181.33551 * 18 17 7 20 20 N 6.74628 * 125.45042 * 146.96945 * 2 1 3 21 21 C 1.47842 * 111.00135 * 120.83963 * 2 1 3 22 22 H 1.09001 * 109.47174 * 299.15626 * 1 2 3 23 23 H 1.08992 * 109.47279 * 59.15715 * 1 2 3 24 24 H 1.09005 * 109.46865 * 179.15997 * 1 2 3 25 25 H 1.09011 * 109.88898 * 242.66813 * 3 2 1 26 26 H 1.09002 * 109.89244 * 3.68538 * 3 2 1 27 27 H 1.09004 * 110.71075 * 140.66614 * 4 3 2 28 28 H 1.09001 * 110.70874 * 263.72327 * 4 3 2 29 29 H 1.09002 * 109.47035 * 285.73029 * 8 7 5 30 30 H 1.08997 * 109.47176 * 45.72716 * 8 7 5 31 31 H 0.97001 * 119.99939 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.47427 * 180.66359 * 17 7 5 33 33 H 1.09005 * 109.47086 * 300.66184 * 17 7 5 34 34 H 1.09000 * 109.47203 * 301.33105 * 18 17 7 35 35 H 1.08998 * 109.47180 * 61.33643 * 18 17 7 36 36 H 1.08998 * 110.37822 * 332.47150 * 21 2 1 37 37 H 1.09006 * 110.36911 * 94.69999 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2323 5 6 3.3059 0.0420 1.5449 6 1 4.1309 -0.2862 0.9125 7 7 3.6355 -0.1276 2.9663 8 6 4.8014 0.6855 3.3371 9 6 4.8996 0.7676 4.8386 10 1 4.1494 0.2953 5.4555 11 6 5.9472 1.4456 5.4249 12 7 6.0327 1.5176 6.7353 13 14 7.2453 2.2619 4.3580 14 1 6.8347 3.6575 4.0596 15 1 8.5439 2.2711 5.0782 16 1 7.3890 1.5059 3.0879 17 6 3.8564 -1.5433 3.2903 18 6 5.0259 -2.0795 2.4622 19 6 5.2268 -3.5063 2.7632 20 7 5.3818 -4.6074 2.9956 21 6 1.9989 -0.7075 1.1851 22 1 -0.3633 0.5007 0.8975 23 1 -0.3633 0.5268 -0.8823 24 1 -0.3633 -1.0276 -0.0151 25 1 2.5697 1.5541 -0.9107 26 1 1.1753 2.0893 0.0659 27 1 3.8000 2.1035 0.9904 28 1 2.3753 1.9575 2.0684 29 1 5.7061 0.2265 2.9383 30 1 4.6909 1.6885 2.9248 31 1 6.7696 1.9949 7.1477 32 1 4.0872 -1.6416 4.3511 33 1 2.9565 -2.1135 3.0599 34 1 4.8051 -1.9596 1.4015 35 1 5.9309 -1.5249 2.7099 36 1 1.2890 -0.6502 2.0102 37 1 2.2130 -1.7482 0.9413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255440380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:58 Heat of formation + Delta-G solvation = 41.536734 kcal Electronic energy + Delta-G solvation = -17239.863394 eV Core-core repulsion = 14631.473444 eV Total energy + Delta-G solvation = -2608.389950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37080 -37.10343 -35.83116 -32.63983 -31.66343 -29.96546 -28.93961 -26.73114 -25.33004 -23.43303 -21.49320 -20.49932 -19.28469 -17.48323 -16.84121 -15.99593 -15.79020 -14.80071 -14.56324 -14.19215 -13.96947 -13.69148 -13.45380 -13.17097 -12.89239 -12.55729 -12.24358 -12.16148 -11.81897 -11.68535 -11.47127 -11.31150 -11.26001 -10.89124 -10.71346 -10.61285 -10.33171 -10.10500 -9.94438 -9.38709 -8.63611 -8.29776 -7.57877 -6.11645 -4.09867 3.02003 3.04790 3.22197 3.29151 3.31515 3.96534 4.26591 4.34658 4.66815 4.84826 4.87172 5.18754 5.23960 5.32652 5.36571 5.41273 5.48870 5.51715 5.69995 5.74600 5.78647 5.82048 6.00046 6.05411 6.14594 6.24423 6.38625 6.54180 6.75751 6.79369 6.96851 7.07713 7.49694 7.70213 7.80435 7.89842 8.55884 8.98048 9.49250 11.01365 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.008657 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.297200 B = 3233.542605 C = 4329.181506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.042 3.958 4 C -0.132 4.132 5 C 0.066 3.934 6 H 0.053 0.947 7 N -0.509 5.509 8 C 0.155 3.845 9 C -0.511 4.511 10 H 0.082 0.918 11 C 0.070 3.930 12 N -0.897 5.897 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.070 3.930 18 C -0.074 4.074 19 C 0.223 3.777 20 N -0.456 5.456 21 C 0.048 3.952 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.081 0.919 29 H -0.003 1.003 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -0.557 -13.297 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.086 4.086 4 C -0.171 4.171 5 C -0.044 4.044 6 H 0.071 0.929 7 N -0.232 5.232 8 C 0.029 3.971 9 C -0.549 4.549 10 H 0.100 0.900 11 C -0.132 4.132 12 N -0.536 5.536 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.060 4.060 18 C -0.115 4.115 19 C -0.095 4.095 20 N -0.134 5.134 21 C -0.080 4.080 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.015 0.985 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.832 -2.194 -12.976 14.827 hybrid contribution 1.182 1.166 -0.276 1.683 sum -5.649 -1.028 -13.252 14.443 Atomic orbital electron populations 1.22513 0.87963 1.01826 1.00426 1.63562 1.07758 1.14473 1.40323 1.22814 0.97943 0.89243 0.98585 1.22841 0.99774 0.96771 0.97704 1.22831 0.95960 0.95163 0.90407 0.92897 1.62282 1.40381 1.06220 1.14270 1.20327 0.86225 0.92594 0.97958 1.20993 1.10307 1.34526 0.89099 0.90037 1.24887 0.97578 0.95968 0.94740 1.69881 1.31997 1.42732 1.09003 0.86951 0.81796 0.80505 0.81045 1.20159 1.21220 1.19100 1.22117 0.94080 0.88655 1.01146 1.20235 1.04904 0.83315 1.03096 1.29190 0.92609 0.94950 0.92723 1.81155 1.09593 1.13124 1.09537 1.23066 0.96090 0.97828 0.90987 0.95299 0.91736 0.91631 0.90840 0.92812 0.90968 0.90003 0.98509 0.95312 0.92594 0.88383 0.91333 0.88067 0.86599 0.92222 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.13 60.07 0.55 0.77 16 2 N -0.54 -6.58 5.44 -239.52 -1.30 -7.88 16 3 C 0.04 0.50 6.90 -2.84 -0.02 0.48 16 4 C -0.13 -1.84 5.38 -24.76 -0.13 -1.97 16 5 C 0.07 0.95 2.21 -65.42 -0.14 0.80 16 6 H 0.05 0.74 6.52 -51.92 -0.34 0.40 16 7 N -0.51 -8.88 4.57 -225.34 -1.03 -9.91 16 8 C 0.15 3.23 3.55 -4.98 -0.02 3.21 16 9 C -0.51 -13.22 9.04 -34.44 -0.31 -13.53 16 10 H 0.08 2.33 7.73 -52.49 -0.41 1.93 16 11 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.90 -26.33 13.96 55.43 0.77 -25.55 16 13 Si 0.87 20.06 27.51 -169.99 -4.68 15.38 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -5.75 6.48 56.52 0.37 -5.38 16 17 C 0.07 1.11 4.95 -3.82 -0.02 1.09 16 18 C -0.07 -1.02 5.06 -29.52 -0.15 -1.17 16 19 C 0.22 3.46 15.43 -20.76 -0.32 3.14 16 20 N -0.46 -8.08 18.54 42.15 0.78 -7.30 16 21 C 0.05 0.62 5.14 -2.30 -0.01 0.61 16 22 H 0.03 0.30 8.09 -51.93 -0.42 -0.12 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.05 0.58 7.58 -51.93 -0.39 0.19 16 27 H 0.07 0.99 7.80 -51.93 -0.40 0.58 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.00 -0.05 4.88 -51.93 -0.25 -0.31 16 30 H 0.03 0.61 6.17 -51.93 -0.32 0.29 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.10 1.80 7.13 -51.93 -0.37 1.43 16 33 H 0.07 0.95 7.09 -51.93 -0.37 0.58 16 34 H 0.10 1.19 6.42 -51.93 -0.33 0.85 16 35 H 0.12 1.74 6.34 -51.93 -0.33 1.41 16 36 H 0.06 0.82 7.77 -51.93 -0.40 0.42 16 37 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -29.15 295.35 -7.30 -36.45 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.62 Total: -0.87 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.68 Total: -4.77 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.78 Total: -50.64 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.68 Total: 15.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.15 -7.30 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255440380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.984 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds