Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47440 * 110.99828 * 2 1 4 4 C 1.54309 * 107.23612 * 123.26156 * 3 2 1 5 5 C 1.55429 * 103.04836 * 22.27947 * 4 3 2 6 6 H 1.09008 * 110.99808 * 82.38764 * 5 4 3 7 7 N 1.46896 * 111.11109 * 206.29625 * 5 4 3 8 8 C 1.46900 * 111.00180 * 297.58281 * 7 5 4 9 9 C 1.50697 * 109.47112 * 165.73142 * 8 7 5 10 10 H 1.08001 * 120.00050 * 357.83300 * 9 8 7 11 11 C 1.37873 * 120.00258 * 177.83444 * 9 8 7 12 12 N 1.31509 * 120.00418 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99813 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47008 * 89.99794 * 13 11 9 15 15 H 1.48494 * 109.47402 * 209.99985 * 13 11 9 16 16 H 1.48503 * 109.46779 * 330.00521 * 13 11 9 17 17 C 1.46903 * 111.00178 * 173.62635 * 7 5 4 18 18 C 1.52998 * 109.47035 * 60.65915 * 17 7 5 19 19 C 1.47203 * 109.47005 * 181.33551 * 18 17 7 20 20 N 6.74628 * 125.45042 * 146.96945 * 2 1 3 21 21 C 1.47842 * 111.00135 * 120.83963 * 2 1 3 22 22 H 1.09001 * 109.47174 * 299.15626 * 1 2 3 23 23 H 1.08992 * 109.47279 * 59.15715 * 1 2 3 24 24 H 1.09005 * 109.46865 * 179.15997 * 1 2 3 25 25 H 1.09011 * 109.88898 * 242.66813 * 3 2 1 26 26 H 1.09002 * 109.89244 * 3.68538 * 3 2 1 27 27 H 1.09004 * 110.71075 * 140.66614 * 4 3 2 28 28 H 1.09001 * 110.70874 * 263.72327 * 4 3 2 29 29 H 1.09002 * 109.47035 * 285.73029 * 8 7 5 30 30 H 1.08997 * 109.47176 * 45.72716 * 8 7 5 31 31 H 0.97001 * 119.99939 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.47427 * 180.66359 * 17 7 5 33 33 H 1.09005 * 109.47086 * 300.66184 * 17 7 5 34 34 H 1.09000 * 109.47203 * 301.33105 * 18 17 7 35 35 H 1.08998 * 109.47180 * 61.33643 * 18 17 7 36 36 H 1.08998 * 110.37822 * 332.47150 * 21 2 1 37 37 H 1.09006 * 110.36911 * 94.69999 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2323 5 6 3.3059 0.0420 1.5449 6 1 4.1309 -0.2862 0.9125 7 7 3.6355 -0.1276 2.9663 8 6 4.8014 0.6855 3.3371 9 6 4.8996 0.7676 4.8386 10 1 4.1494 0.2953 5.4555 11 6 5.9472 1.4456 5.4249 12 7 6.0327 1.5176 6.7353 13 14 7.2453 2.2619 4.3580 14 1 6.8347 3.6575 4.0596 15 1 8.5439 2.2711 5.0782 16 1 7.3890 1.5059 3.0879 17 6 3.8564 -1.5433 3.2903 18 6 5.0259 -2.0795 2.4622 19 6 5.2268 -3.5063 2.7632 20 7 5.3818 -4.6074 2.9956 21 6 1.9989 -0.7075 1.1851 22 1 -0.3633 0.5007 0.8975 23 1 -0.3633 0.5268 -0.8823 24 1 -0.3633 -1.0276 -0.0151 25 1 2.5697 1.5541 -0.9107 26 1 1.1753 2.0893 0.0659 27 1 3.8000 2.1035 0.9904 28 1 2.3753 1.9575 2.0684 29 1 5.7061 0.2265 2.9383 30 1 4.6909 1.6885 2.9248 31 1 6.7696 1.9949 7.1477 32 1 4.0872 -1.6416 4.3511 33 1 2.9565 -2.1135 3.0599 34 1 4.8051 -1.9596 1.4015 35 1 5.9309 -1.5249 2.7099 36 1 1.2890 -0.6502 2.0102 37 1 2.2130 -1.7482 0.9413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255440380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = 20.345158 kcal Electronic energy + Delta-G solvation = -17240.782329 eV Core-core repulsion = 14631.473444 eV Total energy + Delta-G solvation = -2609.308885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50919 -38.30716 -37.15730 -34.62228 -32.75144 -31.38760 -30.14319 -28.18551 -26.33403 -24.87865 -22.93048 -21.50901 -20.57701 -18.99406 -18.49910 -17.16740 -16.90330 -16.42927 -15.79090 -15.50915 -15.18332 -15.01436 -14.63933 -14.35335 -14.18245 -14.01728 -13.59884 -13.54284 -13.17852 -12.94850 -12.71100 -12.53708 -12.31913 -12.23743 -12.22185 -11.80628 -11.74823 -11.49079 -11.37104 -11.33798 -10.69121 -9.23365 -8.95347 -8.19899 -6.22180 1.41921 1.42719 1.52015 1.75504 1.79862 2.40984 2.85153 3.12053 3.16292 3.48981 3.76861 3.86809 4.11078 4.18649 4.32202 4.37834 4.57158 4.58500 4.61813 4.66779 4.74966 4.85300 5.00930 5.05440 5.06034 5.09235 5.15814 5.21692 5.29252 5.38564 5.65351 5.99046 6.06814 6.16997 6.39962 6.59882 6.72569 6.86549 7.41301 8.96871 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.008657 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.297200 B = 3233.542605 C = 4329.181506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.047 3.953 4 C -0.135 4.135 5 C 0.064 3.936 6 H 0.070 0.930 7 N -0.524 5.524 8 C 0.165 3.835 9 C -0.507 4.507 10 H 0.036 0.964 11 C 0.006 3.994 12 N -0.954 5.954 13 Si 0.937 3.063 14 H -0.270 1.270 15 H -0.293 1.293 16 H -0.234 1.234 17 C 0.073 3.927 18 C -0.061 4.061 19 C 0.244 3.756 20 N -0.495 5.495 21 C 0.054 3.946 22 H 0.022 0.978 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -0.339 -16.572 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.081 4.081 4 C -0.173 4.173 5 C -0.045 4.045 6 H 0.088 0.912 7 N -0.247 5.247 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.054 0.946 11 C -0.191 4.191 12 N -0.595 5.595 13 Si 0.761 3.239 14 H -0.195 1.195 15 H -0.219 1.219 16 H -0.157 1.157 17 C -0.057 4.057 18 C -0.103 4.103 19 C -0.073 4.073 20 N -0.173 5.173 21 C -0.074 4.074 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.752 -1.991 -16.285 17.742 hybrid contribution 1.013 1.077 0.792 1.678 sum -5.739 -0.914 -15.493 16.547 Atomic orbital electron populations 1.22578 0.86852 1.02561 1.00834 1.63635 1.08862 1.14543 1.39508 1.22815 0.97944 0.89349 0.97954 1.22841 1.00187 0.96345 0.97962 1.22932 0.97197 0.96007 0.88321 0.91206 1.62109 1.38973 1.06614 1.16981 1.20071 0.88186 0.93681 0.94260 1.21288 1.08626 1.32838 0.91793 0.94580 1.25816 1.00341 0.96995 0.95905 1.70065 1.33256 1.44749 1.11425 0.85865 0.78054 0.79813 0.80182 1.19484 1.21898 1.15713 1.22000 0.95906 0.88331 0.99441 1.20208 1.03643 0.81856 1.04586 1.29369 0.91477 0.94933 0.91509 1.81182 1.10805 1.14448 1.10886 1.23005 0.94958 0.98432 0.90990 0.95914 0.90252 0.90861 0.89473 0.92001 0.90583 0.92231 0.97094 0.94865 0.92816 0.92025 0.89221 0.84625 0.87107 0.93528 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.13 127.69 1.17 1.52 16 2 N -0.54 -11.50 5.44 -911.71 -4.96 -16.46 16 3 C 0.05 0.97 6.90 86.64 0.60 1.57 16 4 C -0.13 -3.42 5.38 31.87 0.17 -3.25 16 5 C 0.06 1.67 2.21 46.40 0.10 1.77 16 6 H 0.07 1.62 6.52 -2.38 -0.02 1.61 16 7 N -0.52 -17.59 4.57 -866.84 -3.96 -21.55 16 8 C 0.16 6.64 3.55 85.56 0.30 6.94 16 9 C -0.51 -26.77 9.04 25.60 0.23 -26.54 16 10 H 0.04 2.18 7.73 -2.91 -0.02 2.15 16 11 C 0.01 0.33 5.47 84.65 0.46 0.80 16 12 N -0.95 -57.96 13.96 21.44 0.30 -57.66 16 13 Si 0.94 40.77 27.51 68.60 1.89 42.66 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.23 -8.90 6.48 99.48 0.64 -8.25 16 17 C 0.07 2.23 4.95 86.30 0.43 2.65 16 18 C -0.06 -1.55 5.06 28.79 0.15 -1.40 16 19 C 0.24 7.15 15.43 89.44 1.38 8.53 16 20 N -0.49 -17.00 18.54 20.01 0.37 -16.63 16 21 C 0.05 1.25 5.14 86.77 0.45 1.69 16 22 H 0.02 0.43 8.09 -2.39 -0.02 0.41 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 26 H 0.06 1.17 7.58 -2.39 -0.02 1.15 16 27 H 0.08 1.86 7.80 -2.39 -0.02 1.84 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.01 0.43 4.88 -2.39 -0.01 0.42 16 30 H 0.03 1.33 6.17 -2.39 -0.01 1.32 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.06 2.33 7.13 -2.39 -0.02 2.31 16 33 H 0.09 2.34 7.09 -2.38 -0.02 2.32 16 34 H 0.14 2.56 6.42 -2.39 -0.02 2.54 16 35 H 0.11 3.02 6.34 -2.39 -0.02 3.00 16 36 H 0.05 1.20 7.77 -2.39 -0.02 1.18 16 37 H 0.09 1.80 7.99 -2.38 -0.02 1.78 16 Total: -1.00 -64.66 295.35 0.05 -64.61 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.75 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.43 Total: -5.72 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -8.26 Total: -112.31 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.89 Total: 42.66 kcal Total: -64.66 0.05 -64.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255440380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.953 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds