Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 N 1.46901 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.47482 * 111.00221 * 155.97505 * 7 6 5 9 9 C 1.53511 * 87.93386 * 221.29896 * 8 7 6 10 10 C 1.50696 * 114.34704 * 139.68482 * 9 8 7 11 11 H 1.08000 * 119.99864 * 266.07209 * 10 9 8 12 12 C 1.37875 * 120.00240 * 86.06749 * 10 9 8 13 13 N 1.31511 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99946 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47314 * 90.00574 * 14 12 10 16 16 H 1.48509 * 109.46989 * 210.00688 * 14 12 10 17 17 H 1.48506 * 109.47121 * 330.00101 * 14 12 10 18 18 C 1.47479 * 111.00076 * 60.00308 * 7 6 5 19 19 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 20 20 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 27 27 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 28 28 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 31 31 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 32 32 H 1.09003 * 113.46935 * 336.06052 * 8 7 6 33 33 H 1.08996 * 113.48108 * 106.52621 * 8 7 6 34 34 H 1.09007 * 114.16394 * 272.37551 * 9 8 7 35 35 H 0.96996 * 120.00408 * 179.97438 * 13 12 10 36 36 H 1.09002 * 113.47396 * 253.46409 * 18 7 6 37 37 H 1.08998 * 113.47893 * 23.87309 * 18 7 6 38 38 H 1.09003 * 109.46575 * 179.97438 * 19 6 5 39 39 H 1.08992 * 109.47256 * 59.99679 * 19 6 5 40 40 H 1.09002 * 109.47069 * 179.97438 * 20 3 2 41 41 H 1.08994 * 109.47518 * 299.99758 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 7 4.3560 0.6457 -3.4980 8 6 5.7424 1.0830 -3.7464 9 6 5.4279 1.0400 -5.2484 10 6 6.0156 2.1803 -6.0391 11 1 5.4271 3.0659 -6.2284 12 6 7.3046 2.0932 -6.5206 13 7 8.0211 1.0147 -6.2904 14 14 8.0332 3.5071 -7.5002 15 1 8.7073 4.4539 -6.5760 16 1 9.0215 2.9772 -8.4738 17 1 6.9499 4.2140 -8.2297 18 6 3.9863 1.2784 -4.7778 19 6 4.1749 0.6877 -1.0558 20 6 3.5648 1.4444 0.1258 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6054 1.9816 0.8418 27 1 0.5490 2.1252 -1.3970 28 1 1.9990 3.1541 -1.3076 29 1 1.9574 1.8574 -3.4204 30 1 1.8820 0.3422 -2.4889 31 1 4.1335 2.3994 -2.3633 32 1 5.9542 2.0860 -3.3758 33 1 6.4901 0.3524 -3.4381 34 1 5.5913 0.0664 -5.7107 35 1 8.9277 0.9533 -6.6295 36 1 3.2458 0.7131 -5.3437 37 1 3.7285 2.3331 -4.6823 38 1 5.2613 0.6886 -0.9665 39 1 3.8116 -0.3399 -1.0558 40 1 3.9282 2.4720 0.1253 41 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256870728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = 2.353823 kcal Electronic energy + Delta-G solvation = -17620.268826 eV Core-core repulsion = 15113.720121 eV Total energy + Delta-G solvation = -2506.548705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85063 -37.88418 -33.25418 -32.21004 -30.69723 -29.50868 -26.78056 -24.87368 -24.09385 -23.09109 -22.00378 -20.62712 -18.61937 -18.19059 -16.63742 -15.73381 -14.99642 -14.80011 -14.43716 -14.17593 -13.77773 -13.41539 -13.20112 -12.86408 -12.35409 -12.15630 -11.89315 -11.74838 -11.52060 -11.31392 -11.18454 -10.98957 -10.84394 -10.72207 -10.58564 -10.40180 -10.19557 -9.99823 -9.67272 -9.49624 -9.06299 -8.85136 -8.40465 -7.89590 -6.03093 -4.07334 3.29668 3.36696 3.39777 4.41494 4.66101 4.77655 4.89565 5.06896 5.21426 5.25294 5.32686 5.45061 5.47031 5.59271 5.65381 5.72227 5.76949 5.82072 5.93733 5.98736 6.04879 6.09128 6.14566 6.23396 6.25213 6.35143 6.38961 6.44757 6.47659 6.53811 6.67517 6.73781 6.76878 6.87906 7.19126 7.28709 7.75975 7.95283 8.18537 8.41230 8.95856 9.57436 11.06566 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.050675 B = 0.005048 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.404797 B = 5545.808410 C = 5612.426955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.085 4.085 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.053 3.947 7 N -0.482 5.482 8 C 0.007 3.993 9 C 0.040 3.960 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.002 4.002 19 C -0.105 4.105 20 C -0.113 4.113 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 0.217 11.907 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.104 4.104 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.056 4.056 7 N -0.204 5.204 8 C -0.122 4.122 9 C 0.021 3.979 10 C -0.553 4.553 11 H 0.075 0.925 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.151 4.151 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.422 -0.573 12.032 16.601 hybrid contribution 0.682 1.717 -0.473 1.907 sum -10.741 1.145 11.559 15.820 Atomic orbital electron populations 1.21816 0.96366 1.01208 1.01567 1.21681 0.95398 0.96709 1.02387 1.21127 0.95622 0.96114 0.97498 1.21575 0.99923 0.99027 0.94577 1.21601 0.94995 1.00954 0.97517 1.22141 0.94450 0.95968 0.93087 1.68895 1.06097 1.44675 1.00740 1.23999 0.89390 0.97561 1.01225 1.20103 0.88565 0.98228 0.91016 1.21042 0.98425 1.01874 1.34007 0.92534 1.25010 0.97224 0.95652 0.95697 1.69967 1.09827 1.27088 1.45532 0.86634 0.79045 0.82539 0.80021 1.20688 1.21143 1.19834 1.23909 1.01071 0.96580 0.91521 1.21449 1.00090 0.99719 0.93072 1.21567 0.94841 1.00506 0.98209 0.93136 0.92494 0.93248 0.92493 0.90747 0.91879 0.92060 0.92405 0.92222 0.91254 0.94237 0.93157 0.92023 0.91921 0.92907 0.92327 0.93037 0.92343 0.91351 0.92335 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.34 4.70 -26.73 -0.13 -1.46 16 3 C -0.09 -0.95 2.66 -90.62 -0.24 -1.19 16 4 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 5 C -0.11 -1.65 4.83 -26.73 -0.13 -1.78 16 6 C 0.05 0.90 1.60 -67.71 -0.11 0.79 16 7 N -0.48 -9.87 6.15 -236.59 -1.45 -11.32 16 8 C 0.01 0.17 7.07 -7.55 -0.05 0.11 16 9 C 0.04 1.02 3.76 -91.24 -0.34 0.67 16 10 C -0.52 -14.21 8.83 -34.44 -0.30 -14.51 16 11 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.82 13.26 55.43 0.74 -25.08 16 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.00 -0.04 6.01 -7.55 -0.05 -0.09 16 19 C -0.11 -1.59 5.15 -26.73 -0.14 -1.72 16 20 C -0.11 -1.39 5.45 -26.73 -0.15 -1.54 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.91 4.83 -51.93 -0.25 0.66 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.92 7.03 -51.92 -0.36 0.55 16 30 H 0.07 1.02 6.32 -51.93 -0.33 0.69 16 31 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 32 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.75 8.11 -51.92 -0.42 1.33 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.10 7.61 -51.93 -0.40 0.70 16 38 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 39 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -27.86 306.68 -9.96 -37.82 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.33 Total: -0.68 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -1.51 Total: -21.54 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.72 Total: -36.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.86 -9.96 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256870728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds