Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 N 1.46901 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.47482 * 111.00221 * 155.97505 * 7 6 5 9 9 C 1.53511 * 87.93386 * 221.29896 * 8 7 6 10 10 C 1.50696 * 114.34704 * 139.68482 * 9 8 7 11 11 H 1.08000 * 119.99864 * 266.07209 * 10 9 8 12 12 C 1.37875 * 120.00240 * 86.06749 * 10 9 8 13 13 N 1.31511 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99946 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47314 * 90.00574 * 14 12 10 16 16 H 1.48509 * 109.46989 * 210.00688 * 14 12 10 17 17 H 1.48506 * 109.47121 * 330.00101 * 14 12 10 18 18 C 1.47479 * 111.00076 * 60.00308 * 7 6 5 19 19 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 20 20 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 27 27 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 28 28 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 31 31 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 32 32 H 1.09003 * 113.46935 * 336.06052 * 8 7 6 33 33 H 1.08996 * 113.48108 * 106.52621 * 8 7 6 34 34 H 1.09007 * 114.16394 * 272.37551 * 9 8 7 35 35 H 0.96996 * 120.00408 * 179.97438 * 13 12 10 36 36 H 1.09002 * 113.47396 * 253.46409 * 18 7 6 37 37 H 1.08998 * 113.47893 * 23.87309 * 18 7 6 38 38 H 1.09003 * 109.46575 * 179.97438 * 19 6 5 39 39 H 1.08992 * 109.47256 * 59.99679 * 19 6 5 40 40 H 1.09002 * 109.47069 * 179.97438 * 20 3 2 41 41 H 1.08994 * 109.47518 * 299.99758 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 7 4.3560 0.6457 -3.4980 8 6 5.7424 1.0830 -3.7464 9 6 5.4279 1.0400 -5.2484 10 6 6.0156 2.1803 -6.0391 11 1 5.4271 3.0659 -6.2284 12 6 7.3046 2.0932 -6.5206 13 7 8.0211 1.0147 -6.2904 14 14 8.0332 3.5071 -7.5002 15 1 8.7073 4.4539 -6.5760 16 1 9.0215 2.9772 -8.4738 17 1 6.9499 4.2140 -8.2297 18 6 3.9863 1.2784 -4.7778 19 6 4.1749 0.6877 -1.0558 20 6 3.5648 1.4444 0.1258 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6054 1.9816 0.8418 27 1 0.5490 2.1252 -1.3970 28 1 1.9990 3.1541 -1.3076 29 1 1.9574 1.8574 -3.4204 30 1 1.8820 0.3422 -2.4889 31 1 4.1335 2.3994 -2.3633 32 1 5.9542 2.0860 -3.3758 33 1 6.4901 0.3524 -3.4381 34 1 5.5913 0.0664 -5.7107 35 1 8.9277 0.9533 -6.6295 36 1 3.2458 0.7131 -5.3437 37 1 3.7285 2.3331 -4.6823 38 1 5.2613 0.6886 -0.9665 39 1 3.8116 -0.3399 -1.0558 40 1 3.9282 2.4720 0.1253 41 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256870728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = -13.709842 kcal Electronic energy + Delta-G solvation = -17620.965399 eV Core-core repulsion = 15113.720121 eV Total energy + Delta-G solvation = -2507.245277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32129 -39.24945 -34.92948 -33.74442 -31.82460 -30.76827 -28.49638 -26.64745 -25.73142 -24.16127 -23.15730 -22.03490 -20.48230 -19.30301 -18.59418 -17.04540 -16.56440 -16.28907 -15.98129 -15.62862 -14.98762 -14.79220 -14.32608 -14.30495 -13.64463 -13.51177 -13.22184 -13.15830 -12.94309 -12.86820 -12.69656 -12.52971 -12.32877 -12.06682 -11.90931 -11.76883 -11.40273 -11.35043 -11.00634 -10.94337 -10.80474 -10.64105 -10.48279 -9.65515 -8.16313 -6.28069 1.41479 1.42078 1.53043 2.41408 3.12648 3.26072 3.71793 3.85162 3.96674 4.14125 4.22651 4.31358 4.39281 4.43140 4.49024 4.58051 4.62886 4.63339 4.66407 4.70787 4.82491 4.91268 4.93207 5.02787 5.05751 5.12942 5.18526 5.21998 5.23318 5.26782 5.29041 5.40976 5.50462 5.51324 5.60979 5.63737 5.70166 5.84057 6.29138 6.45730 6.81164 7.40525 8.93648 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.050675 B = 0.005048 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.404797 B = 5545.808410 C = 5612.426955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.051 3.949 7 N -0.479 5.479 8 C 0.020 3.980 9 C 0.020 3.980 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.959 3.041 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.015 3.985 19 C -0.102 4.102 20 C -0.108 4.108 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 1.313 13.041 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.100 4.100 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.058 4.058 7 N -0.201 5.201 8 C -0.109 4.109 9 C 0.001 3.999 10 C -0.570 4.570 11 H 0.076 0.924 12 C -0.184 4.184 13 N -0.561 5.561 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.189 1.189 18 C -0.113 4.113 19 C -0.140 4.140 20 C -0.146 4.146 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.942 0.526 13.173 18.475 hybrid contribution 1.132 1.322 -0.809 1.919 sum -11.810 1.848 12.364 17.198 Atomic orbital electron populations 1.21796 0.95209 1.01687 1.02045 1.21652 0.96405 0.96186 1.01824 1.21131 0.94595 0.96582 0.97648 1.21560 1.00813 0.98532 0.93719 1.21555 0.92873 1.01436 0.98619 1.22254 0.96134 0.94925 0.92524 1.68845 1.04288 1.45222 1.01776 1.23703 0.90816 0.96659 0.99753 1.20064 0.91818 0.96211 0.91805 1.21363 0.98875 1.02354 1.34377 0.92409 1.25840 0.97626 0.98209 0.96760 1.70095 1.10188 1.29115 1.46709 0.85550 0.78292 0.79262 0.78536 1.20026 1.20781 1.18896 1.23696 0.98793 0.97079 0.91760 1.21420 0.99213 1.00022 0.93296 1.21550 0.95694 1.00063 0.97335 0.92771 0.92690 0.92041 0.91799 0.92610 0.89810 0.90241 0.92451 0.93004 0.91239 0.95522 0.93807 0.93793 0.95234 0.92810 0.91156 0.92581 0.94097 0.91406 0.92410 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.12 -2.33 4.70 30.60 0.14 -2.19 16 3 C -0.08 -1.57 2.66 -10.79 -0.03 -1.60 16 4 C -0.11 -2.33 5.21 30.59 0.16 -2.17 16 5 C -0.11 -2.98 4.83 30.60 0.15 -2.83 16 6 C 0.05 1.70 1.60 44.92 0.07 1.77 16 7 N -0.48 -19.83 6.15 -902.43 -5.55 -25.38 16 8 C 0.02 0.97 7.07 83.57 0.59 1.56 16 9 C 0.02 1.06 3.76 -11.20 -0.04 1.02 16 10 C -0.53 -29.77 8.83 25.60 0.23 -29.55 16 11 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 12 C 0.01 0.84 5.46 84.65 0.46 1.30 16 13 N -0.92 -54.98 13.26 21.45 0.28 -54.69 16 14 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.02 0.67 6.01 83.57 0.50 1.17 16 19 C -0.10 -2.99 5.15 30.60 0.16 -2.83 16 20 C -0.11 -2.43 5.45 30.59 0.17 -2.27 16 21 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.05 0.89 6.57 -2.39 -0.02 0.88 16 23 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.27 4.83 -2.39 -0.01 1.26 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.46 6.57 -2.39 -0.02 1.45 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.52 7.03 -2.38 -0.02 1.50 16 30 H 0.07 1.95 6.32 -2.39 -0.02 1.93 16 31 H 0.03 0.98 7.52 -2.39 -0.02 0.96 16 32 H 0.04 2.14 7.50 -2.39 -0.02 2.13 16 33 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.03 1.73 8.11 -2.38 -0.02 1.71 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.06 2.37 7.61 -2.39 -0.02 2.35 16 38 H 0.04 1.32 8.04 -2.39 -0.02 1.30 16 39 H 0.07 2.00 6.54 -2.39 -0.02 1.98 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -60.22 306.68 0.99 -59.23 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.97 Total: 13.42 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 3.25 Total: -38.30 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -5.26 Total: -80.07 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -60.22 0.99 -59.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256870728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.518 kcal (2) G-P(sol) polarization free energy of solvation -60.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds