Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47205 * 269.99872 * 3 2 1 5 5 H 1.48502 * 109.47093 * 29.99709 * 3 2 1 6 6 H 1.48506 * 109.47319 * 149.99764 * 3 2 1 7 7 C 1.37877 * 120.00176 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85136 * 179.97438 * 7 2 1 9 9 C 1.53234 * 108.53514 * 231.36949 * 8 7 2 10 10 C 1.52966 * 109.40173 * 305.37116 * 9 8 7 11 11 H 1.08994 * 109.41405 * 303.56397 * 10 9 8 12 12 N 1.46905 * 109.40824 * 183.70466 * 10 9 8 13 13 C 1.46900 * 110.99503 * 155.00077 * 12 10 9 14 14 C 1.53001 * 109.47179 * 274.99521 * 13 12 10 15 15 C 1.52996 * 109.47133 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47231 * 60.00073 * 15 14 13 17 17 C 1.52991 * 109.47338 * 300.00170 * 16 15 14 18 18 C 1.52998 * 109.46808 * 154.99783 * 13 12 10 19 19 C 1.52955 * 109.81833 * 63.59932 * 10 9 8 20 20 C 1.51275 * 120.84907 * 0.02562 * 7 2 1 21 21 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.62888 * 111.65522 * 8 7 2 23 23 H 1.08991 * 109.62269 * 351.07837 * 8 7 2 24 24 H 1.08997 * 109.48279 * 185.39620 * 9 8 7 25 25 H 1.08996 * 109.48200 * 65.34879 * 9 8 7 26 26 H 1.00891 * 111.00364 * 31.04701 * 12 10 9 27 27 H 1.09004 * 109.47415 * 34.99996 * 13 12 10 28 28 H 1.08993 * 109.46975 * 300.00843 * 14 13 12 29 29 H 1.09002 * 109.46446 * 60.00296 * 14 13 12 30 30 H 1.09004 * 109.47338 * 300.00401 * 15 14 13 31 31 H 1.09004 * 109.47298 * 180.02562 * 15 14 13 32 32 H 1.08991 * 109.47079 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.46692 * 59.99932 * 16 15 14 34 34 H 1.08999 * 109.47087 * 300.00029 * 17 16 15 35 35 H 1.08997 * 109.47441 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.47671 * 299.99726 * 18 13 12 37 37 H 1.08999 * 109.47321 * 60.00221 * 18 13 12 38 38 H 1.09007 * 109.48467 * 56.37603 * 19 10 9 39 39 H 1.08999 * 109.48598 * 176.40431 * 19 10 9 40 40 H 1.09000 * 109.62450 * 8.91439 * 20 7 2 41 41 H 1.09001 * 109.78500 * 248.43883 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9903 -2.1314 -1.1346 10 6 3.3395 -3.5073 -0.9827 11 1 3.5728 -3.9117 0.0022 12 7 3.8605 -4.4106 -2.0174 13 6 3.7581 -5.8130 -1.5920 14 6 4.9805 -6.1807 -0.7485 15 6 4.8741 -7.6414 -0.3061 16 6 4.8150 -8.5449 -1.5394 17 6 3.5928 -8.1773 -2.3829 18 6 3.6987 -6.7168 -2.8251 19 6 1.8225 -3.3830 -1.1332 20 6 1.2677 -2.5152 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 3.8780 -1.6001 0.9543 23 1 3.8980 -0.2079 -0.1601 24 1 5.0744 -2.2351 -1.0898 25 1 3.7055 -1.6984 -2.0935 26 1 4.8113 -4.1744 -2.2583 27 1 2.8535 -5.9477 -0.9990 28 1 5.8849 -6.0459 -1.3416 29 1 5.0226 -5.5366 0.1299 30 1 3.9694 -7.7765 0.2869 31 1 5.7447 -7.9032 0.2953 32 1 4.7397 -9.5855 -1.2241 33 1 5.7196 -8.4098 -2.1323 34 1 2.6882 -8.3123 -1.7900 35 1 3.5509 -8.8206 -3.2618 36 1 2.8279 -6.4550 -3.4260 37 1 4.6033 -6.5822 -3.4182 38 1 1.5890 -2.9203 -2.0922 39 1 1.3702 -4.3737 -1.0879 40 1 0.2036 -2.3409 -0.1590 41 1 1.4168 -3.0208 0.9546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257449673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = -43.128600 kcal Electronic energy + Delta-G solvation = -17661.216509 eV Core-core repulsion = 15152.695538 eV Total energy + Delta-G solvation = -2508.520971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.95824 -36.84902 -33.79861 -31.62709 -30.68999 -29.55515 -28.76101 -25.94590 -22.56707 -21.99790 -21.81313 -20.69472 -19.70632 -19.00460 -16.11556 -15.63146 -14.98929 -14.41448 -14.34004 -14.13440 -13.55179 -13.29536 -12.90629 -12.64322 -12.57679 -12.20374 -12.07795 -11.89195 -11.36017 -11.11444 -11.03836 -10.85455 -10.74943 -10.61833 -10.40848 -10.27602 -10.09535 -9.98459 -9.80023 -9.42911 -8.82784 -8.56547 -8.41376 -7.80370 -6.04571 -3.94674 3.29928 3.38236 3.39562 4.42489 4.50278 4.75080 4.83318 5.04693 5.23990 5.24442 5.33925 5.51296 5.56612 5.61596 5.68590 5.80597 5.83692 5.95486 6.03068 6.12118 6.13023 6.16748 6.25094 6.31070 6.46458 6.50311 6.61880 6.74871 6.88550 6.95330 7.04563 7.09828 7.20365 7.47177 7.68913 7.75770 7.82665 7.91769 8.00005 8.46433 9.03447 9.60218 11.05259 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048872 B = 0.005490 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.790375 B = 5098.747164 C = 5290.504265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.485 4.485 8 C -0.013 4.013 9 C -0.107 4.107 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.686 5.686 13 C 0.088 3.912 14 C -0.148 4.148 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.091 4.091 20 C 0.008 3.992 21 H 0.263 0.737 22 H 0.014 0.986 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.058 0.942 26 H 0.330 0.670 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.025 0.975 40 H 0.056 0.944 41 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -12.983 -3.134 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.504 4.504 8 C -0.052 4.052 9 C -0.146 4.146 10 C -0.007 4.007 11 H 0.049 0.951 12 N -0.315 5.315 13 C -0.022 4.022 14 C -0.187 4.187 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.130 4.130 20 C -0.030 4.030 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.148 0.852 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 8.191 -12.854 -3.497 15.638 hybrid contribution 1.193 0.884 0.656 1.623 sum 9.385 -11.970 -2.842 15.474 Atomic orbital electron populations 1.69840 1.06142 1.26787 1.50133 1.24845 0.94710 0.98498 0.94720 0.86673 0.79884 0.83444 0.78408 1.20419 1.21699 1.19335 1.20038 0.89253 0.91563 1.49515 1.19724 0.96879 0.94983 0.93566 1.21749 0.95804 0.95666 1.01367 1.21436 0.96786 0.91461 0.91034 0.95124 1.60748 1.26000 1.01516 1.43273 1.21574 0.97189 0.88726 0.94712 1.22279 0.99429 0.96529 1.00462 1.21472 1.01584 0.94933 0.97371 1.21531 0.98524 0.98712 0.96805 1.21533 0.98154 0.96702 0.99364 1.21481 1.02154 0.93166 0.97508 1.21590 0.92652 0.97474 1.01267 1.19389 0.98628 0.92974 0.91975 0.92683 0.96773 0.95215 0.95414 0.92281 0.85230 0.90579 0.92249 0.92105 0.92009 0.92484 0.92448 0.92274 0.92049 0.92239 0.91404 0.92453 0.92804 0.95622 0.92542 0.98279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 12.73 55.43 0.71 -25.43 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.45 27.27 -169.99 -4.64 16.82 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.28 6.46 56.52 0.37 -5.91 16 7 C -0.48 -13.04 5.52 -98.92 -0.55 -13.58 16 8 C -0.01 -0.32 5.59 -27.48 -0.15 -0.47 16 9 C -0.11 -2.21 5.24 -26.63 -0.14 -2.35 16 10 C 0.10 1.99 2.21 -67.75 -0.15 1.84 16 11 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 12 N -0.69 -11.29 6.05 -99.78 -0.60 -11.90 16 13 C 0.09 1.26 2.27 -67.71 -0.15 1.11 16 14 C -0.15 -1.86 5.16 -26.73 -0.14 -2.00 16 15 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 16 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 17 C -0.12 -1.25 5.92 -26.76 -0.16 -1.41 16 18 C -0.10 -1.30 5.53 -26.75 -0.15 -1.45 16 19 C -0.09 -2.04 5.43 -26.66 -0.14 -2.18 16 20 C 0.01 0.21 5.97 -27.51 -0.16 0.05 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 24 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.33 5.02 8.04 -39.30 -0.32 4.70 16 27 H 0.08 1.22 7.07 -51.93 -0.37 0.85 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.06 0.84 7.42 -51.93 -0.39 0.46 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.03 0.53 7.36 -51.93 -0.38 0.15 16 40 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 41 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -27.81 303.89 -9.78 -37.59 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.52 Total: -0.46 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.31 Total: -21.20 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.10 Total: -37.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.64 Total: 16.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.81 -9.78 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257449673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.534 kcal (2) G-P(sol) polarization free energy of solvation -27.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds