Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47205 * 269.99872 * 3 2 1 5 5 H 1.48502 * 109.47093 * 29.99709 * 3 2 1 6 6 H 1.48506 * 109.47319 * 149.99764 * 3 2 1 7 7 C 1.37877 * 120.00176 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85136 * 179.97438 * 7 2 1 9 9 C 1.53234 * 108.53514 * 231.36949 * 8 7 2 10 10 C 1.52966 * 109.40173 * 305.37116 * 9 8 7 11 11 H 1.08994 * 109.41405 * 303.56397 * 10 9 8 12 12 N 1.46905 * 109.40824 * 183.70466 * 10 9 8 13 13 C 1.46900 * 110.99503 * 155.00077 * 12 10 9 14 14 C 1.53001 * 109.47179 * 274.99521 * 13 12 10 15 15 C 1.52996 * 109.47133 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47231 * 60.00073 * 15 14 13 17 17 C 1.52991 * 109.47338 * 300.00170 * 16 15 14 18 18 C 1.52998 * 109.46808 * 154.99783 * 13 12 10 19 19 C 1.52955 * 109.81833 * 63.59932 * 10 9 8 20 20 C 1.51275 * 120.84907 * 0.02562 * 7 2 1 21 21 H 0.96996 * 119.99926 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.62888 * 111.65522 * 8 7 2 23 23 H 1.08991 * 109.62269 * 351.07837 * 8 7 2 24 24 H 1.08997 * 109.48279 * 185.39620 * 9 8 7 25 25 H 1.08996 * 109.48200 * 65.34879 * 9 8 7 26 26 H 1.00891 * 111.00364 * 31.04701 * 12 10 9 27 27 H 1.09004 * 109.47415 * 34.99996 * 13 12 10 28 28 H 1.08993 * 109.46975 * 300.00843 * 14 13 12 29 29 H 1.09002 * 109.46446 * 60.00296 * 14 13 12 30 30 H 1.09004 * 109.47338 * 300.00401 * 15 14 13 31 31 H 1.09004 * 109.47298 * 180.02562 * 15 14 13 32 32 H 1.08991 * 109.47079 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.46692 * 59.99932 * 16 15 14 34 34 H 1.08999 * 109.47087 * 300.00029 * 17 16 15 35 35 H 1.08997 * 109.47441 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.47671 * 299.99726 * 18 13 12 37 37 H 1.08999 * 109.47321 * 60.00221 * 18 13 12 38 38 H 1.09007 * 109.48467 * 56.37603 * 19 10 9 39 39 H 1.08999 * 109.48598 * 176.40431 * 19 10 9 40 40 H 1.09000 * 109.62450 * 8.91439 * 20 7 2 41 41 H 1.09001 * 109.78500 * 248.43883 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9903 -2.1314 -1.1346 10 6 3.3395 -3.5073 -0.9827 11 1 3.5728 -3.9117 0.0022 12 7 3.8605 -4.4106 -2.0174 13 6 3.7581 -5.8130 -1.5920 14 6 4.9805 -6.1807 -0.7485 15 6 4.8741 -7.6414 -0.3061 16 6 4.8150 -8.5449 -1.5394 17 6 3.5928 -8.1773 -2.3829 18 6 3.6987 -6.7168 -2.8251 19 6 1.8225 -3.3830 -1.1332 20 6 1.2677 -2.5152 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 3.8780 -1.6001 0.9543 23 1 3.8980 -0.2079 -0.1601 24 1 5.0744 -2.2351 -1.0898 25 1 3.7055 -1.6984 -2.0935 26 1 4.8113 -4.1744 -2.2583 27 1 2.8535 -5.9477 -0.9990 28 1 5.8849 -6.0459 -1.3416 29 1 5.0226 -5.5366 0.1299 30 1 3.9694 -7.7765 0.2869 31 1 5.7447 -7.9032 0.2953 32 1 4.7397 -9.5855 -1.2241 33 1 5.7196 -8.4098 -2.1323 34 1 2.6882 -8.3123 -1.7900 35 1 3.5509 -8.8206 -3.2618 36 1 2.8279 -6.4550 -3.4260 37 1 4.6033 -6.5822 -3.4182 38 1 1.5890 -2.9203 -2.0922 39 1 1.3702 -4.3737 -1.0879 40 1 0.2036 -2.3409 -0.1590 41 1 1.4168 -3.0208 0.9546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257449673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = -58.769255 kcal Electronic energy + Delta-G solvation = -17661.894738 eV Core-core repulsion = 15152.695538 eV Total energy + Delta-G solvation = -2509.199200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15462 -38.37823 -35.39116 -33.39259 -31.61535 -31.43732 -30.19841 -27.53790 -23.73331 -23.64128 -23.29267 -22.10814 -20.98538 -20.50342 -18.04654 -16.78491 -16.39364 -16.34167 -15.42844 -15.18085 -14.97092 -14.70481 -14.54950 -14.15850 -13.97544 -13.80286 -13.60174 -13.04253 -12.96898 -12.70134 -12.51015 -12.37702 -12.06825 -11.93572 -11.87547 -11.76682 -11.42719 -11.36552 -11.12913 -11.07787 -10.71618 -10.53992 -10.46551 -9.16013 -8.16037 -6.10374 1.38967 1.40616 1.50153 2.41335 3.07270 3.31473 3.81355 3.91969 4.11219 4.14746 4.21888 4.34967 4.42733 4.54308 4.58072 4.64897 4.69781 4.77518 4.79032 4.92160 5.00923 5.05748 5.09472 5.15093 5.18489 5.22130 5.24509 5.25802 5.28260 5.35150 5.41245 5.51874 5.57240 5.60991 5.63854 5.77986 5.90183 6.30976 6.37396 6.68413 6.96142 7.47305 8.95485 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048872 B = 0.005490 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.790375 B = 5098.747164 C = 5290.504265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.017 3.983 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.498 4.498 8 C -0.016 4.016 9 C -0.102 4.102 10 C 0.114 3.886 11 H 0.026 0.974 12 N -0.687 5.687 13 C 0.087 3.913 14 C -0.142 4.142 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.080 4.080 20 C 0.006 3.994 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.343 0.657 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.021 0.979 41 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -14.050 -3.720 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.518 4.518 8 C -0.055 4.055 9 C -0.140 4.140 10 C 0.005 3.995 11 H 0.044 0.956 12 N -0.317 5.317 13 C -0.023 4.023 14 C -0.181 4.181 15 C -0.153 4.153 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.138 4.138 19 C -0.119 4.119 20 C -0.032 4.032 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.162 0.838 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 10.923 -13.941 -4.088 18.176 hybrid contribution 0.305 1.132 0.857 1.452 sum 11.227 -12.809 -3.231 17.336 Atomic orbital electron populations 1.69993 1.07831 1.27429 1.52264 1.25685 0.95410 1.02049 0.94930 0.85739 0.79191 0.79296 0.78665 1.19855 1.21904 1.17588 1.20666 0.91399 0.91692 1.47996 1.19751 0.94534 0.96149 0.95017 1.21640 0.97898 0.95095 0.99380 1.21112 0.94591 0.92019 0.91776 0.95560 1.60612 1.26867 1.02182 1.42070 1.21622 0.97183 0.87728 0.95736 1.22196 0.98805 0.97493 0.99613 1.21478 1.01827 0.93930 0.98070 1.21517 0.98320 0.99231 0.96098 1.21527 0.98414 0.95496 1.00104 1.21428 1.01960 0.94002 0.96404 1.21386 0.95116 0.96814 0.98553 1.19347 0.96880 0.93952 0.93045 0.92882 0.96373 0.94806 0.91956 0.93264 0.83849 0.92817 0.91002 0.93581 0.92833 0.91160 0.90945 0.91404 0.92734 0.90673 0.92820 0.91489 0.94688 0.94789 0.96022 0.98803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 12.73 21.45 0.27 -56.41 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.95 44.02 27.27 68.60 1.87 45.89 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.25 -10.94 6.46 99.48 0.64 -10.30 16 7 C -0.50 -27.06 5.52 -16.17 -0.09 -27.14 16 8 C -0.02 -0.75 5.59 30.11 0.17 -0.59 16 9 C -0.10 -3.98 5.24 30.66 0.16 -3.82 16 10 C 0.11 4.36 2.21 44.89 0.10 4.46 16 11 H 0.03 1.04 7.11 -2.39 -0.02 1.02 16 12 N -0.69 -21.39 6.05 -469.59 -2.84 -24.24 16 13 C 0.09 2.35 2.27 44.91 0.10 2.45 16 14 C -0.14 -3.24 5.16 30.59 0.16 -3.08 16 15 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 16 C -0.11 -1.87 5.92 30.59 0.18 -1.68 16 17 C -0.12 -2.17 5.92 30.58 0.18 -1.99 16 18 C -0.10 -2.27 5.53 30.58 0.17 -2.10 16 19 C -0.08 -3.62 5.43 30.64 0.17 -3.45 16 20 C 0.01 0.30 5.97 30.09 0.18 0.48 16 21 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 22 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.03 1.50 4.78 -2.39 -0.01 1.49 16 24 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 26 H 0.34 9.41 8.04 -89.70 -0.72 8.69 16 27 H 0.05 1.69 7.07 -2.39 -0.02 1.67 16 28 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.05 1.19 7.42 -2.39 -0.02 1.17 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.03 1.44 7.36 -2.39 -0.02 1.42 16 40 H 0.02 1.26 7.07 -2.39 -0.02 1.24 16 41 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: -1.00 -60.56 303.89 1.62 -58.94 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.20 Total: 12.90 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 2.12 Total: -37.08 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.57 Total: -80.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.87 Total: 45.89 kcal Total: -60.56 1.62 -58.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257449673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.172 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds