Wall clock time and date at job start Sun Mar 29 2020 21:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48494 * 109.46920 * 239.99532 * 3 2 1 5 5 H 1.48501 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47078 * 119.99641 * 3 2 1 7 7 C 1.37875 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.53508 * 114.17167 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93055 * 220.32722 * 10 9 7 12 12 C 1.46908 * 111.00214 * 138.70337 * 11 10 9 13 13 C 1.53010 * 109.47109 * 174.99710 * 12 11 10 14 14 C 1.52992 * 109.46158 * 195.94510 * 13 12 11 15 15 C 1.52986 * 109.50542 * 44.00997 * 14 13 12 16 16 C 1.52998 * 109.48275 * 247.07092 * 15 14 13 17 17 C 1.53015 * 109.43220 * 75.95364 * 16 15 14 18 18 C 1.52981 * 109.47289 * 284.03912 * 17 16 15 19 19 C 1.52989 * 109.50205 * 112.94180 * 18 17 16 20 20 C 1.47468 * 87.83965 * 27.00884 * 11 10 9 21 21 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 22 22 H 1.09006 * 113.25288 * 312.94747 * 9 7 2 23 23 H 1.08998 * 113.48127 * 105.55694 * 10 9 7 24 24 H 1.09008 * 113.52807 * 335.09929 * 10 9 7 25 25 H 1.09002 * 109.47192 * 54.99350 * 12 11 10 26 26 H 1.09002 * 109.47394 * 75.94462 * 13 12 11 27 27 H 1.09001 * 109.47273 * 315.94235 * 13 12 11 28 28 H 1.09003 * 109.46674 * 164.02155 * 14 13 12 29 29 H 1.09009 * 109.46223 * 284.00066 * 14 13 12 30 30 H 1.08998 * 109.46377 * 7.07412 * 15 14 13 31 31 H 1.08995 * 109.46819 * 127.06327 * 15 14 13 32 32 H 1.08998 * 109.47872 * 195.94301 * 16 15 14 33 33 H 1.09006 * 109.48037 * 315.95875 * 16 15 14 34 34 H 1.08997 * 109.47074 * 44.04321 * 17 16 15 35 35 H 1.09006 * 109.46876 * 164.03999 * 17 16 15 36 36 H 1.09006 * 109.46562 * 232.94731 * 18 17 16 37 37 H 1.08997 * 109.47018 * 352.93509 * 18 17 16 38 38 H 1.08999 * 109.47407 * 75.98517 * 19 18 17 39 39 H 1.08995 * 109.47755 * 195.98874 * 19 18 17 40 40 H 1.08997 * 113.48079 * 87.75445 * 20 11 10 41 41 H 1.09009 * 113.47860 * 218.22593 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2083 -4.3587 -0.9524 12 6 1.9274 -5.0871 -2.0062 13 6 0.9215 -5.8127 -2.9022 14 6 1.6498 -6.8701 -3.7341 15 6 2.6347 -7.6309 -2.8443 16 6 4.0665 -7.3141 -3.2808 17 6 4.4515 -5.9175 -2.7886 18 6 3.7785 -4.8629 -3.6690 19 6 2.7389 -4.0989 -2.8467 20 6 0.8566 -2.9973 -1.3969 21 1 -0.4850 0.8400 -0.0004 22 1 0.4447 -2.5305 0.7333 23 1 2.1858 -4.2524 0.9651 24 1 3.1397 -3.5661 -0.4183 25 1 2.5996 -5.8146 -1.5511 26 1 0.4423 -5.0939 -3.5669 27 1 0.1652 -6.2952 -2.2829 28 1 0.9236 -7.5677 -4.1513 29 1 2.1933 -6.3838 -4.5444 30 1 2.4957 -7.3276 -1.8067 31 1 2.4552 -8.7020 -2.9369 32 1 4.7477 -8.0504 -2.8545 33 1 4.1305 -7.3467 -4.3685 34 1 4.1233 -5.7926 -1.7567 35 1 5.5338 -5.7988 -2.8424 36 1 4.5303 -4.1667 -4.0410 37 1 3.2880 -5.3516 -4.5107 38 1 3.2441 -3.3917 -2.1889 39 1 2.0711 -3.5582 -3.5172 40 1 1.5011 -2.6194 -2.1905 41 1 -0.2035 -2.8732 -1.6189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258236969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:52 Heat of formation + Delta-G solvation = 33.551548 kcal Electronic energy + Delta-G solvation = -18127.976139 eV Core-core repulsion = 15622.780269 eV Total energy + Delta-G solvation = -2505.195870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26908 -37.61156 -32.99960 -32.64751 -31.85437 -28.20302 -25.81449 -25.48847 -24.81047 -23.01439 -21.48815 -20.71715 -19.17380 -17.68660 -16.87381 -15.56606 -15.17854 -14.59308 -14.30229 -14.07110 -13.93168 -13.80751 -13.11321 -12.82801 -12.51412 -12.20201 -11.65532 -11.39862 -11.26782 -11.16818 -11.06931 -10.88618 -10.78242 -10.62901 -10.57936 -10.39217 -10.12563 -9.68973 -9.54208 -9.40318 -9.06123 -8.84965 -8.38431 -7.74762 -6.01881 -4.06182 3.31187 3.36399 3.38456 4.42182 4.71148 4.86176 4.95621 5.11096 5.22101 5.27642 5.33118 5.40446 5.42577 5.49429 5.65080 5.76369 5.94812 5.99007 6.02783 6.05685 6.16147 6.18061 6.25096 6.28138 6.31427 6.38847 6.47619 6.51049 6.52537 6.63497 6.72086 6.78008 6.84829 6.94290 7.24474 7.35348 7.76963 7.97001 8.21516 8.42590 8.96707 9.58370 11.07629 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039225 B = 0.006292 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.651636 B = 4448.993097 C = 4738.673386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 C -0.009 4.009 11 N -0.482 5.482 12 C 0.034 3.966 13 C -0.104 4.104 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.148 4.148 20 C -0.006 4.006 21 H 0.261 0.739 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -12.131 -7.229 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.138 4.138 11 N -0.204 5.204 12 C -0.075 4.075 13 C -0.142 4.142 14 C -0.162 4.162 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.187 4.187 20 C -0.135 4.135 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.178 -12.505 -7.012 15.243 hybrid contribution 1.075 1.463 -0.492 1.881 sum 6.253 -11.042 -7.504 14.742 Atomic orbital electron populations 1.69962 1.05969 1.26737 1.49751 1.25004 0.94785 0.99040 0.94719 0.86714 0.79675 0.83299 0.78638 1.20294 1.21262 1.20186 1.21003 0.92626 0.90386 1.51315 0.92628 1.20069 0.94218 0.90710 0.92766 1.24031 0.96106 0.97863 0.95815 1.69030 1.26884 1.14297 1.10140 1.22619 0.95009 0.96686 0.93180 1.21505 0.97823 0.97208 0.97623 1.21841 0.98105 0.97646 0.98641 1.21823 0.94560 0.99235 1.00977 1.21694 0.96474 0.96741 1.00494 1.21831 0.99555 0.94493 1.00728 1.21825 0.98039 0.97541 0.98670 1.22325 0.97989 0.98847 0.99508 1.24239 1.00127 0.87439 1.01708 0.92880 0.92139 0.92457 0.92582 0.88996 0.92542 0.91649 0.92756 0.91240 0.90631 0.92783 0.92656 0.92179 0.90846 0.92723 0.92792 0.91326 0.90700 0.91684 0.91342 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.26 55.43 0.74 -25.07 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.07 8.82 -34.44 -0.30 -14.37 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 1.05 3.77 -91.24 -0.34 0.70 16 10 C -0.01 -0.20 7.07 -7.56 -0.05 -0.25 16 11 N -0.48 -9.81 6.34 -236.60 -1.50 -11.31 16 12 C 0.03 0.56 1.67 -67.69 -0.11 0.44 16 13 C -0.10 -1.54 5.28 -26.73 -0.14 -1.68 16 14 C -0.12 -1.50 5.48 -26.74 -0.15 -1.64 16 15 C -0.13 -1.46 5.47 -26.74 -0.15 -1.61 16 16 C -0.12 -1.24 5.59 -26.72 -0.15 -1.39 16 17 C -0.13 -1.56 5.47 -26.73 -0.15 -1.71 16 18 C -0.12 -1.61 5.48 -26.75 -0.15 -1.76 16 19 C -0.15 -2.41 3.41 -26.73 -0.09 -2.50 16 20 C -0.01 -0.15 6.88 -7.56 -0.05 -0.20 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.17 6.14 -51.92 -0.32 0.85 16 25 H 0.09 1.45 2.82 -51.93 -0.15 1.31 16 26 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.81 4.69 -51.92 -0.24 0.57 16 30 H 0.08 0.97 5.47 -51.93 -0.28 0.68 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 34 H 0.07 1.00 5.47 -51.93 -0.28 0.71 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.84 4.69 -51.93 -0.24 0.60 16 38 H 0.07 1.39 5.58 -51.93 -0.29 1.10 16 39 H 0.06 1.11 6.71 -51.93 -0.35 0.76 16 40 H 0.07 1.57 4.76 -51.93 -0.25 1.32 16 41 H 0.06 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -27.72 291.30 -9.87 -37.60 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.55 Total: 2.46 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.93 Total: -24.21 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.76 Total: -36.38 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.72 -9.87 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258236969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.151 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds