Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48494 * 109.46920 * 239.99532 * 3 2 1 5 5 H 1.48501 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47078 * 119.99641 * 3 2 1 7 7 C 1.37875 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.53508 * 114.17167 * 180.02562 * 9 7 2 11 11 N 1.47477 * 87.93055 * 220.32722 * 10 9 7 12 12 C 1.46908 * 111.00214 * 138.70337 * 11 10 9 13 13 C 1.53010 * 109.47109 * 174.99710 * 12 11 10 14 14 C 1.52992 * 109.46158 * 195.94510 * 13 12 11 15 15 C 1.52986 * 109.50542 * 44.00997 * 14 13 12 16 16 C 1.52998 * 109.48275 * 247.07092 * 15 14 13 17 17 C 1.53015 * 109.43220 * 75.95364 * 16 15 14 18 18 C 1.52981 * 109.47289 * 284.03912 * 17 16 15 19 19 C 1.52989 * 109.50205 * 112.94180 * 18 17 16 20 20 C 1.47468 * 87.83965 * 27.00884 * 11 10 9 21 21 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 22 22 H 1.09006 * 113.25288 * 312.94747 * 9 7 2 23 23 H 1.08998 * 113.48127 * 105.55694 * 10 9 7 24 24 H 1.09008 * 113.52807 * 335.09929 * 10 9 7 25 25 H 1.09002 * 109.47192 * 54.99350 * 12 11 10 26 26 H 1.09002 * 109.47394 * 75.94462 * 13 12 11 27 27 H 1.09001 * 109.47273 * 315.94235 * 13 12 11 28 28 H 1.09003 * 109.46674 * 164.02155 * 14 13 12 29 29 H 1.09009 * 109.46223 * 284.00066 * 14 13 12 30 30 H 1.08998 * 109.46377 * 7.07412 * 15 14 13 31 31 H 1.08995 * 109.46819 * 127.06327 * 15 14 13 32 32 H 1.08998 * 109.47872 * 195.94301 * 16 15 14 33 33 H 1.09006 * 109.48037 * 315.95875 * 16 15 14 34 34 H 1.08997 * 109.47074 * 44.04321 * 17 16 15 35 35 H 1.09006 * 109.46876 * 164.03999 * 17 16 15 36 36 H 1.09006 * 109.46562 * 232.94731 * 18 17 16 37 37 H 1.08997 * 109.47018 * 352.93509 * 18 17 16 38 38 H 1.08999 * 109.47407 * 75.98517 * 19 18 17 39 39 H 1.08995 * 109.47755 * 195.98874 * 19 18 17 40 40 H 1.08997 * 113.48079 * 87.75445 * 20 11 10 41 41 H 1.09009 * 113.47860 * 218.22593 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2083 -4.3587 -0.9524 12 6 1.9274 -5.0871 -2.0062 13 6 0.9215 -5.8127 -2.9022 14 6 1.6498 -6.8701 -3.7341 15 6 2.6347 -7.6309 -2.8443 16 6 4.0665 -7.3141 -3.2808 17 6 4.4515 -5.9175 -2.7886 18 6 3.7785 -4.8629 -3.6690 19 6 2.7389 -4.0989 -2.8467 20 6 0.8566 -2.9973 -1.3969 21 1 -0.4850 0.8400 -0.0004 22 1 0.4447 -2.5305 0.7333 23 1 2.1858 -4.2524 0.9651 24 1 3.1397 -3.5661 -0.4183 25 1 2.5996 -5.8146 -1.5511 26 1 0.4423 -5.0939 -3.5669 27 1 0.1652 -6.2952 -2.2829 28 1 0.9236 -7.5677 -4.1513 29 1 2.1933 -6.3838 -4.5444 30 1 2.4957 -7.3276 -1.8067 31 1 2.4552 -8.7020 -2.9369 32 1 4.7477 -8.0504 -2.8545 33 1 4.1305 -7.3467 -4.3685 34 1 4.1233 -5.7926 -1.7567 35 1 5.5338 -5.7988 -2.8424 36 1 4.5303 -4.1667 -4.0410 37 1 3.2880 -5.3516 -4.5107 38 1 3.2441 -3.3917 -2.1889 39 1 2.0711 -3.5582 -3.5172 40 1 1.5011 -2.6194 -2.1905 41 1 -0.2035 -2.8732 -1.6189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258236969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = 17.010447 kcal Electronic energy + Delta-G solvation = -18128.693415 eV Core-core repulsion = 15622.780269 eV Total energy + Delta-G solvation = -2505.913146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75824 -38.96376 -34.84095 -33.73245 -33.33626 -29.85629 -27.23622 -26.88474 -26.58884 -24.63853 -22.59698 -21.86573 -20.64808 -19.23126 -18.78932 -17.14716 -16.44871 -16.37539 -16.09953 -15.31553 -15.09517 -14.92269 -14.44494 -14.11037 -14.02541 -13.83830 -13.13349 -12.97808 -12.84771 -12.71691 -12.43920 -12.29033 -12.20346 -12.12332 -11.84434 -11.70597 -11.42268 -11.19515 -11.00670 -10.83614 -10.66823 -10.56242 -10.47079 -9.45196 -8.14604 -6.26161 1.41659 1.43187 1.51115 2.41932 3.14449 3.36944 3.67393 3.90472 4.01430 4.17226 4.24086 4.27602 4.31903 4.37963 4.38457 4.41774 4.52433 4.68553 4.74806 4.84442 4.88047 4.96610 5.03454 5.06566 5.10856 5.17393 5.18244 5.24039 5.26340 5.30819 5.36347 5.39370 5.49204 5.60596 5.63028 5.68295 5.77178 5.86566 6.31340 6.51100 6.83002 7.42075 8.95049 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039225 B = 0.006292 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.651636 B = 4448.993097 C = 4738.673386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.007 3.993 11 N -0.484 5.484 12 C 0.033 3.967 13 C -0.101 4.101 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.143 4.143 20 C 0.008 3.992 21 H 0.262 0.738 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.744 -13.369 -8.447 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.122 4.122 11 N -0.206 5.206 12 C -0.075 4.075 13 C -0.139 4.139 14 C -0.155 4.155 15 C -0.165 4.165 16 C -0.149 4.149 17 C -0.165 4.165 18 C -0.155 4.155 19 C -0.181 4.181 20 C -0.121 4.121 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.066 -13.761 -8.231 17.522 hybrid contribution 0.463 1.798 -0.094 1.859 sum 7.529 -11.963 -8.325 16.405 Atomic orbital electron populations 1.70100 1.07597 1.27584 1.50964 1.25833 0.95576 1.02697 0.94369 0.85634 0.78384 0.78754 0.79048 1.19396 1.21030 1.19330 1.21328 0.92895 0.91458 1.50960 0.92359 1.20016 0.94375 0.92127 0.93254 1.23830 0.95836 0.95832 0.96684 1.68961 1.27553 1.12822 1.11236 1.22774 0.95491 0.96631 0.92570 1.21481 0.97437 0.97654 0.97346 1.21809 0.98448 0.96968 0.98314 1.21808 0.94893 1.00151 0.99658 1.21680 0.96061 0.95865 1.01343 1.21817 1.00170 0.95151 0.99401 1.21801 0.97249 0.97729 0.98675 1.22207 0.98368 0.98468 0.99088 1.23960 0.98602 0.89179 1.00355 0.92900 0.95846 0.91520 0.91752 0.87469 0.93696 0.92614 0.91258 0.90503 0.92299 0.91057 0.91251 0.90859 0.92524 0.91530 0.92279 0.89911 0.93259 0.93095 0.91203 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 13.26 21.45 0.28 -55.02 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.53 -29.43 8.82 25.60 0.23 -29.20 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.02 1.12 3.77 -11.20 -0.04 1.08 16 10 C 0.01 0.30 7.07 83.57 0.59 0.89 16 11 N -0.48 -19.98 6.34 -902.48 -5.72 -25.70 16 12 C 0.03 1.08 1.67 44.92 0.08 1.16 16 13 C -0.10 -2.91 5.28 30.60 0.16 -2.75 16 14 C -0.12 -2.50 5.48 30.59 0.17 -2.34 16 15 C -0.13 -2.50 5.47 30.59 0.17 -2.33 16 16 C -0.11 -1.96 5.59 30.60 0.17 -1.79 16 17 C -0.13 -2.74 5.47 30.59 0.17 -2.58 16 18 C -0.12 -2.80 5.48 30.58 0.17 -2.64 16 19 C -0.14 -4.56 3.41 30.60 0.10 -4.45 16 20 C 0.01 0.39 6.88 83.57 0.58 0.96 16 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.02 1.39 8.11 -2.38 -0.02 1.37 16 23 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 24 H 0.06 2.67 6.14 -2.38 -0.01 2.66 16 25 H 0.11 3.24 2.82 -2.39 -0.01 3.23 16 26 H 0.04 1.38 7.82 -2.39 -0.02 1.36 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.54 4.69 -2.38 -0.01 1.53 16 30 H 0.06 1.37 5.47 -2.39 -0.01 1.35 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.13 7.47 -2.38 -0.02 1.12 16 34 H 0.06 1.42 5.47 -2.39 -0.01 1.40 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.77 4.69 -2.39 -0.01 1.76 16 38 H 0.05 1.82 5.58 -2.39 -0.01 1.81 16 39 H 0.05 1.74 6.71 -2.39 -0.02 1.73 16 40 H 0.07 3.30 4.76 -2.39 -0.01 3.29 16 41 H 0.03 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -60.60 291.30 0.59 -60.01 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.01 Total: 17.68 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 2.99 Total: -42.72 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -5.44 Total: -80.72 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -60.60 0.59 -60.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258236969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.024 kcal (2) G-P(sol) polarization free energy of solvation -60.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds