Wall clock time and date at job start Sun Mar 29 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 C 1.52997 * 109.46917 * 119.99721 * 2 1 3 5 5 C 1.53000 * 109.47019 * 60.00244 * 4 2 1 6 6 C 1.53004 * 109.46892 * 59.99816 * 5 4 2 7 7 C 1.52995 * 109.46983 * 299.99652 * 6 5 4 8 8 H 1.08995 * 109.47582 * 300.00162 * 7 6 5 9 9 N 1.46908 * 109.46967 * 179.97438 * 7 6 5 10 10 C 1.47483 * 110.99517 * 75.95776 * 9 7 6 11 11 C 1.53517 * 87.93162 * 138.70402 * 10 9 7 12 12 C 1.50699 * 114.34289 * 220.31499 * 11 10 9 13 13 H 1.08003 * 119.99562 * 93.91985 * 12 11 10 14 14 C 1.37869 * 120.00309 * 273.92350 * 12 11 10 15 15 N 1.31522 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00312 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47449 * 89.99894 * 16 14 12 18 18 H 1.48498 * 109.47179 * 209.99864 * 16 14 12 19 19 H 1.48497 * 109.47001 * 329.99569 * 16 14 12 20 20 C 1.47480 * 110.99910 * 171.92669 * 9 7 6 21 21 C 1.52992 * 109.47125 * 240.00082 * 2 1 3 22 22 H 1.09003 * 109.47414 * 300.00124 * 1 2 3 23 23 H 1.09003 * 109.46959 * 60.00041 * 1 2 3 24 24 H 1.09002 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47666 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47338 * 300.00153 * 3 2 1 27 27 H 1.09003 * 109.47100 * 59.99684 * 3 2 1 28 28 H 1.09000 * 109.47571 * 299.99932 * 4 2 1 29 29 H 1.09005 * 109.46816 * 179.97438 * 4 2 1 30 30 H 1.08995 * 109.47160 * 299.99969 * 5 4 2 31 31 H 1.09003 * 109.47193 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.47038 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47106 * 60.00273 * 6 5 4 34 34 H 1.08999 * 113.47463 * 253.46786 * 10 9 7 35 35 H 1.08996 * 113.47709 * 23.93580 * 10 9 7 36 36 H 1.08995 * 114.17124 * 87.61947 * 11 10 9 37 37 H 0.96996 * 119.99629 * 180.02562 * 15 14 12 38 38 H 1.08998 * 113.47877 * 336.06452 * 20 9 7 39 39 H 1.09000 * 113.47335 * 106.47696 * 20 9 7 40 40 H 1.09005 * 109.47307 * 179.97438 * 21 2 1 41 41 H 1.09003 * 109.47302 * 60.00087 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0400 -2.8849 0.0000 7 6 1.5300 -2.1637 -1.2492 8 1 0.4400 -2.1637 -1.2492 9 7 2.0202 -2.8558 -2.4487 10 6 1.2638 -4.0992 -2.6876 11 6 1.2674 -3.7484 -4.1822 12 6 -0.0308 -4.0369 -4.8910 13 1 -0.7718 -3.2585 -4.9986 14 6 -0.2726 -5.2943 -5.4021 15 7 0.6299 -6.2420 -5.2715 16 14 -1.8815 -5.6516 -6.2814 17 1 -1.7285 -5.3636 -7.7301 18 1 -2.2402 -7.0807 -6.0961 19 1 -2.9550 -4.7947 -5.7170 20 6 1.3959 -2.3079 -3.6673 21 6 2.0400 -0.7212 -1.2492 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6766 -0.2074 2.1393 29 1 3.1300 -0.7216 1.2490 30 1 0.4400 -2.1637 1.2492 31 1 1.8936 -2.6777 2.1391 32 1 1.6763 -3.9125 -0.0003 33 1 3.1301 -2.8849 0.0001 34 1 1.8271 -5.0021 -2.4522 35 1 0.2687 -4.0943 -2.2428 36 1 2.1424 -4.1088 -4.7230 37 1 0.4599 -7.1265 -5.6314 38 1 0.4361 -1.8251 -3.4840 39 1 2.0709 -1.6920 -4.2616 40 1 3.1300 -0.7208 -1.2494 41 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258284109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:48 Heat of formation + Delta-G solvation = -12.762630 kcal Electronic energy + Delta-G solvation = -17817.799883 eV Core-core repulsion = 15310.595679 eV Total energy + Delta-G solvation = -2507.204203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41512 -39.35410 -34.88682 -33.90306 -32.00376 -28.82900 -28.19702 -27.58010 -26.17904 -25.70060 -22.84207 -21.57535 -20.48479 -19.28556 -18.61309 -16.91216 -16.39713 -16.21829 -15.58459 -15.54728 -15.35337 -14.82843 -14.48324 -13.89410 -13.75473 -13.49745 -13.21147 -13.14380 -12.87498 -12.82614 -12.73758 -12.36398 -12.34809 -12.16381 -12.03258 -11.81135 -11.62039 -11.43174 -11.03902 -11.02484 -10.79518 -10.66747 -10.48308 -9.64227 -8.16430 -6.28153 1.41646 1.41832 1.52573 2.41260 3.12527 3.25153 3.70939 3.75221 3.98370 4.11048 4.23036 4.33508 4.37900 4.45360 4.46142 4.51447 4.58786 4.66775 4.74932 4.77891 4.85760 4.90062 4.96547 5.03010 5.08756 5.09718 5.16980 5.18804 5.21358 5.24003 5.25582 5.35811 5.44273 5.52229 5.60682 5.62639 5.66926 5.84006 6.29017 6.45968 6.81001 7.40402 8.93544 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039070 B = 0.005662 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.481620 B = 4944.159518 C = 5099.246311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.105 4.105 7 C 0.050 3.950 8 H 0.034 0.966 9 N -0.480 5.480 10 C 0.022 3.978 11 C 0.021 3.979 12 C -0.531 4.531 13 H 0.057 0.943 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.015 3.985 21 C -0.090 4.090 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 12.376 13.075 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.142 4.142 7 C -0.059 4.059 8 H 0.052 0.948 9 N -0.203 5.203 10 C -0.107 4.107 11 C 0.002 3.998 12 C -0.569 4.569 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.113 4.113 21 C -0.128 4.128 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.597 12.204 13.151 18.012 hybrid contribution -1.529 -0.744 -0.818 1.887 sum 0.068 11.460 12.332 16.835 Atomic orbital electron populations 1.21967 0.94820 1.01451 1.01886 1.20526 0.95599 0.95699 0.94395 1.21812 1.01075 0.94278 1.02141 1.21576 1.00644 0.94564 0.97167 1.21551 1.00843 0.96192 0.96635 1.21445 1.00828 0.98108 0.93869 1.22280 0.96746 0.95223 0.91619 0.94773 1.68846 1.45252 1.04296 1.01870 1.23652 0.94521 0.92901 0.99673 1.20057 0.96076 0.91824 0.91878 1.21356 1.02271 0.96628 1.36678 0.92444 1.25840 1.00103 0.96144 0.96351 1.70102 1.36095 1.03336 1.46567 0.85548 0.79744 0.77338 0.79002 1.19822 1.20849 1.19044 1.23704 0.96781 0.98246 0.92616 1.21511 1.00503 0.92982 0.97810 0.91179 0.93417 0.93390 0.92443 0.92992 0.91271 0.90262 0.91782 0.91953 0.90673 0.93930 0.91967 0.93781 0.93783 0.95279 0.92808 0.92702 0.91269 0.92017 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.78 71.98 0.56 -2.57 16 2 C -0.06 -1.33 0.77 -52.19 -0.04 -1.37 16 3 C -0.14 -2.42 8.47 71.98 0.61 -1.81 16 4 C -0.10 -1.99 4.73 30.59 0.14 -1.84 16 5 C -0.11 -2.57 5.65 30.60 0.17 -2.40 16 6 C -0.10 -3.12 5.33 30.59 0.16 -2.96 16 7 C 0.05 1.68 1.26 44.91 0.06 1.74 16 8 H 0.03 1.24 5.85 -2.39 -0.01 1.22 16 9 N -0.48 -19.96 6.13 -902.38 -5.53 -25.49 16 10 C 0.02 1.06 6.67 83.58 0.56 1.61 16 11 C 0.02 1.09 3.76 -11.19 -0.04 1.05 16 12 C -0.53 -29.78 8.83 25.60 0.23 -29.55 16 13 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 14 C 0.01 0.84 5.46 84.65 0.46 1.30 16 15 N -0.92 -54.98 13.26 21.45 0.28 -54.69 16 16 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.02 0.67 6.28 83.58 0.52 1.19 16 21 C -0.09 -2.54 4.04 30.59 0.12 -2.42 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.18 4.81 -2.39 -0.01 1.17 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.42 6.43 -2.39 -0.02 1.40 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.39 7.74 -2.39 -0.02 1.38 16 33 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 2.15 7.63 -2.39 -0.02 2.13 16 36 H 0.03 1.71 8.11 -2.39 -0.02 1.69 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.05 2.34 7.76 -2.39 -0.02 2.32 16 39 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.05 1.50 7.45 -2.39 -0.02 1.49 16 Total: -1.00 -60.37 308.88 1.26 -59.11 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.96 Total: 13.33 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.52 Total: -38.01 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -5.25 Total: -80.19 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.37 1.26 -59.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258284109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.349 kcal (2) G-P(sol) polarization free energy of solvation -60.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds