Wall clock time and date at job start Sun Mar 29 2020 22:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47248 * 2 1 4 4 H 1.09002 * 110.62634 * 303.34665 * 3 2 1 5 5 C 1.55143 * 110.70707 * 66.45260 * 3 2 1 6 6 C 1.54910 * 101.65306 * 154.03777 * 5 3 2 7 7 N 1.47844 * 104.79433 * 322.92763 * 6 5 3 8 8 C 1.46898 * 110.99888 * 146.36503 * 7 6 5 9 9 C 1.52996 * 109.47131 * 74.12156 * 8 7 6 10 10 C 1.50705 * 115.55824 * 79.71842 * 9 8 7 11 11 H 1.07997 * 120.00235 * 1.00794 * 10 9 8 12 12 C 1.37887 * 119.99865 * 181.00966 * 10 9 8 13 13 N 1.31514 * 119.99494 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99867 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47182 * 59.99848 * 14 12 10 16 16 H 1.48500 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47406 * 299.99851 * 14 12 10 18 18 C 1.52998 * 117.50169 * 294.03108 * 9 8 7 19 19 C 1.53001 * 117.49973 * 225.40430 * 9 8 7 20 20 C 1.47443 * 108.56692 * 24.09839 * 7 6 5 21 21 H 1.08997 * 109.88857 * 239.60005 * 20 7 6 22 22 C 1.53001 * 109.89059 * 118.41754 * 20 7 6 23 23 H 1.09004 * 109.47428 * 300.00201 * 1 2 3 24 24 H 1.09004 * 109.46763 * 60.00200 * 1 2 3 25 25 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47114 * 239.99446 * 2 1 3 27 27 H 1.09004 * 109.46763 * 119.99800 * 2 1 3 28 28 H 1.08997 * 110.99386 * 35.94374 * 5 3 2 29 29 H 1.09000 * 110.98664 * 272.12676 * 5 3 2 30 30 H 1.09001 * 110.37009 * 204.09933 * 6 5 3 31 31 H 1.09001 * 110.37255 * 81.75523 * 6 5 3 32 32 H 1.08999 * 109.46888 * 314.12524 * 8 7 6 33 33 H 1.09004 * 109.47456 * 194.12514 * 8 7 6 34 34 H 0.97003 * 119.99133 * 179.97438 * 13 12 10 35 35 H 1.08997 * 117.50122 * 145.02352 * 18 9 8 36 36 H 1.08995 * 117.50108 * 359.97438 * 18 9 8 37 37 H 1.08992 * 117.50002 * 359.97438 * 19 9 8 38 38 H 1.08999 * 117.51566 * 214.97048 * 19 9 8 39 39 H 1.09004 * 109.47358 * 61.44844 * 22 20 7 40 40 H 1.08992 * 109.47518 * 181.45409 * 22 20 7 41 41 H 1.09006 * 109.46677 * 301.45362 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6393 1.9914 -0.8522 5 6 1.6763 2.1529 1.3304 6 6 2.7840 3.2320 1.4219 7 7 3.9969 2.5738 0.8913 8 6 4.8501 3.5360 0.1813 9 6 5.5566 4.4370 1.1961 10 6 6.7673 3.8385 1.8648 11 1 7.0913 2.8420 1.6033 12 6 7.4613 4.5632 2.8105 13 7 7.0669 5.7769 3.1285 14 14 8.9615 3.8211 3.6399 15 1 9.9850 3.4974 2.6137 16 1 9.5232 4.7950 4.6100 17 1 8.5686 2.5807 4.3557 18 6 4.6872 5.3841 2.0257 19 6 5.5771 5.9403 0.9122 20 6 3.5828 1.4757 -0.0013 21 1 3.9745 0.5286 0.3697 22 6 4.0967 1.7352 -1.4189 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7344 1.4614 2.1709 29 1 0.6890 2.6109 1.2711 30 1 2.9374 3.5313 2.4587 31 1 2.5232 4.0962 0.8110 32 1 4.2361 4.1465 -0.4809 33 1 5.5938 2.9978 -0.4064 34 1 7.5550 6.2865 3.7941 35 1 4.9909 5.5743 3.0550 36 1 3.6119 5.3656 1.8482 37 1 5.0877 6.2874 0.0023 38 1 6.4661 6.4968 1.2092 39 1 5.1861 1.7711 -1.4096 40 1 3.7652 0.9331 -2.0781 41 1 3.7049 2.6866 -1.7788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307703638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:09 Heat of formation + Delta-G solvation = 29.600371 kcal Electronic energy + Delta-G solvation = -17925.665912 eV Core-core repulsion = 15420.298706 eV Total energy + Delta-G solvation = -2505.367206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43393 -36.38476 -33.88737 -31.44696 -31.23572 -29.29996 -26.00678 -25.40414 -24.51606 -22.54042 -20.56456 -20.06683 -19.59637 -18.43582 -16.07104 -15.35262 -15.19960 -14.66444 -14.29554 -14.19336 -13.42562 -13.30055 -13.01900 -12.39721 -12.26837 -12.11879 -11.80871 -11.68776 -11.23553 -11.01884 -10.97161 -10.78592 -10.55804 -10.50471 -10.36343 -10.31006 -10.13759 -9.98150 -9.73026 -9.28963 -8.73070 -8.14885 -7.92353 -7.43817 -5.82896 -3.86039 3.37867 3.41975 3.45514 4.49988 4.56596 4.74260 4.88137 5.01957 5.26923 5.31674 5.40188 5.50044 5.62743 5.64332 5.71699 5.84019 5.90270 5.93435 5.98312 6.09485 6.13799 6.20763 6.23163 6.27774 6.32986 6.40014 6.50345 6.62439 6.68849 6.72619 6.85121 7.12629 7.32488 7.48439 7.78041 7.81892 7.96066 8.16771 8.35356 8.66294 9.09384 9.67197 11.13110 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.006434 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.035752 B = 4351.027025 C = 4531.948135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.070 0.930 5 C -0.127 4.127 6 C 0.052 3.948 7 N -0.506 5.506 8 C 0.093 3.907 9 C 0.027 3.973 10 C -0.455 4.455 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.884 5.884 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.278 1.278 18 C -0.187 4.187 19 C -0.194 4.194 20 C 0.071 3.929 21 H 0.079 0.921 22 C -0.168 4.168 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 -7.882 -6.147 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.165 4.165 6 C -0.076 4.076 7 N -0.229 5.229 8 C -0.034 4.034 9 C 0.027 3.973 10 C -0.493 4.493 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.523 5.523 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.225 4.225 19 C -0.233 4.233 20 C -0.038 4.038 21 H 0.097 0.903 22 C -0.226 4.226 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.099 -7.933 -5.609 14.014 hybrid contribution 0.307 0.168 -0.200 0.403 sum -9.792 -7.765 -5.809 13.781 Atomic orbital electron populations 1.21772 0.96173 1.01115 1.01733 1.21482 0.95476 0.96080 1.01892 1.22514 0.95920 0.96031 0.98050 0.91182 1.22823 0.98215 0.98254 0.97170 1.23135 0.88393 0.94765 1.01291 1.63610 1.15476 1.10225 1.33602 1.21959 0.94387 0.92572 0.94513 1.18911 0.95740 0.86670 0.96023 1.20526 1.08516 1.00318 1.19915 0.92325 1.25001 0.97676 0.95014 0.96882 1.70020 1.39545 1.10153 1.32614 0.86619 0.83037 0.78835 0.79224 1.20461 1.21516 1.20349 1.22893 0.91980 1.08371 0.99280 1.22849 1.02975 1.00846 0.96622 1.22511 0.92728 0.96954 0.91592 0.90324 1.22386 1.02212 1.01088 0.96885 0.92601 0.93098 0.93139 0.92277 0.91726 0.90946 0.91752 0.89891 0.94448 0.97023 0.91016 0.93341 0.87330 0.93912 0.94495 0.87574 0.91367 0.93101 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.76 37.16 0.36 -1.07 16 2 C -0.11 -1.22 5.29 -26.73 -0.14 -1.36 16 3 C -0.11 -1.39 2.50 -88.80 -0.22 -1.61 16 4 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 5 C -0.13 -1.77 5.68 -24.59 -0.14 -1.91 16 6 C 0.05 0.92 4.78 -2.30 -0.01 0.91 16 7 N -0.51 -9.84 5.13 -223.35 -1.15 -10.99 16 8 C 0.09 1.98 3.74 -3.83 -0.01 1.96 16 9 C 0.03 0.69 2.25 -155.66 -0.35 0.34 16 10 C -0.46 -12.70 9.19 -34.43 -0.32 -13.02 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.05 1.51 5.28 -17.82 -0.09 1.42 16 13 N -0.88 -25.15 8.59 55.43 0.48 -24.68 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 C -0.19 -4.74 8.14 -26.73 -0.22 -4.95 16 19 C -0.19 -4.96 9.31 -26.73 -0.25 -5.21 16 20 C 0.07 1.11 3.61 -66.72 -0.24 0.87 16 21 H 0.08 1.25 7.82 -51.93 -0.41 0.85 16 22 C -0.17 -2.42 7.82 37.16 0.29 -2.13 16 23 H 0.05 0.54 7.48 -51.93 -0.39 0.15 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 29 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.08 1.63 7.21 -51.93 -0.37 1.25 16 31 H 0.04 0.68 6.76 -51.93 -0.35 0.33 16 32 H 0.01 0.24 6.76 -51.93 -0.35 -0.11 16 33 H 0.07 1.51 5.73 -51.93 -0.30 1.22 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.11 3.06 6.20 -51.93 -0.32 2.74 16 36 H 0.04 0.98 5.62 -51.93 -0.29 0.69 16 37 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.11 2.98 6.37 -51.93 -0.33 2.64 16 39 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.80 7.06 -51.93 -0.37 0.43 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -28.30 304.17 -9.58 -37.88 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.13 Total: 2.33 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -1.34 Total: -25.77 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.67 Total: -35.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.30 -9.58 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.477 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds