Wall clock time and date at job start Sun Mar 29 2020 22:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47248 * 2 1 4 4 H 1.09002 * 110.62634 * 303.34665 * 3 2 1 5 5 C 1.55143 * 110.70707 * 66.45260 * 3 2 1 6 6 C 1.54910 * 101.65306 * 154.03777 * 5 3 2 7 7 N 1.47844 * 104.79433 * 322.92763 * 6 5 3 8 8 C 1.46898 * 110.99888 * 146.36503 * 7 6 5 9 9 C 1.52996 * 109.47131 * 74.12156 * 8 7 6 10 10 C 1.50705 * 115.55824 * 79.71842 * 9 8 7 11 11 H 1.07997 * 120.00235 * 1.00794 * 10 9 8 12 12 C 1.37887 * 119.99865 * 181.00966 * 10 9 8 13 13 N 1.31514 * 119.99494 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99867 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47182 * 59.99848 * 14 12 10 16 16 H 1.48500 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47406 * 299.99851 * 14 12 10 18 18 C 1.52998 * 117.50169 * 294.03108 * 9 8 7 19 19 C 1.53001 * 117.49973 * 225.40430 * 9 8 7 20 20 C 1.47443 * 108.56692 * 24.09839 * 7 6 5 21 21 H 1.08997 * 109.88857 * 239.60005 * 20 7 6 22 22 C 1.53001 * 109.89059 * 118.41754 * 20 7 6 23 23 H 1.09004 * 109.47428 * 300.00201 * 1 2 3 24 24 H 1.09004 * 109.46763 * 60.00200 * 1 2 3 25 25 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47114 * 239.99446 * 2 1 3 27 27 H 1.09004 * 109.46763 * 119.99800 * 2 1 3 28 28 H 1.08997 * 110.99386 * 35.94374 * 5 3 2 29 29 H 1.09000 * 110.98664 * 272.12676 * 5 3 2 30 30 H 1.09001 * 110.37009 * 204.09933 * 6 5 3 31 31 H 1.09001 * 110.37255 * 81.75523 * 6 5 3 32 32 H 1.08999 * 109.46888 * 314.12524 * 8 7 6 33 33 H 1.09004 * 109.47456 * 194.12514 * 8 7 6 34 34 H 0.97003 * 119.99133 * 179.97438 * 13 12 10 35 35 H 1.08997 * 117.50122 * 145.02352 * 18 9 8 36 36 H 1.08995 * 117.50108 * 359.97438 * 18 9 8 37 37 H 1.08992 * 117.50002 * 359.97438 * 19 9 8 38 38 H 1.08999 * 117.51566 * 214.97048 * 19 9 8 39 39 H 1.09004 * 109.47358 * 61.44844 * 22 20 7 40 40 H 1.08992 * 109.47518 * 181.45409 * 22 20 7 41 41 H 1.09006 * 109.46677 * 301.45362 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6393 1.9914 -0.8522 5 6 1.6763 2.1529 1.3304 6 6 2.7840 3.2320 1.4219 7 7 3.9969 2.5738 0.8913 8 6 4.8501 3.5360 0.1813 9 6 5.5566 4.4370 1.1961 10 6 6.7673 3.8385 1.8648 11 1 7.0913 2.8420 1.6033 12 6 7.4613 4.5632 2.8105 13 7 7.0669 5.7769 3.1285 14 14 8.9615 3.8211 3.6399 15 1 9.9850 3.4974 2.6137 16 1 9.5232 4.7950 4.6100 17 1 8.5686 2.5807 4.3557 18 6 4.6872 5.3841 2.0257 19 6 5.5771 5.9403 0.9122 20 6 3.5828 1.4757 -0.0013 21 1 3.9745 0.5286 0.3697 22 6 4.0967 1.7352 -1.4189 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7344 1.4614 2.1709 29 1 0.6890 2.6109 1.2711 30 1 2.9374 3.5313 2.4587 31 1 2.5232 4.0962 0.8110 32 1 4.2361 4.1465 -0.4809 33 1 5.5938 2.9978 -0.4064 34 1 7.5550 6.2865 3.7941 35 1 4.9909 5.5743 3.0550 36 1 3.6119 5.3656 1.8482 37 1 5.0877 6.2874 0.0023 38 1 6.4661 6.4968 1.2092 39 1 5.1861 1.7711 -1.4096 40 1 3.7652 0.9331 -2.0781 41 1 3.7049 2.6866 -1.7788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307703638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:09 Heat of formation + Delta-G solvation = 14.117375 kcal Electronic energy + Delta-G solvation = -17926.337305 eV Core-core repulsion = 15420.298706 eV Total energy + Delta-G solvation = -2506.038599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79141 -38.19928 -35.11606 -33.46689 -32.47909 -30.57164 -27.95389 -26.56268 -26.19268 -23.69726 -22.42211 -21.43079 -21.04850 -20.09842 -18.04621 -16.98150 -16.53949 -16.31297 -15.69396 -15.27018 -15.20681 -14.61006 -14.35977 -13.95374 -13.47064 -13.22362 -13.18398 -12.94708 -12.83262 -12.78141 -12.46761 -12.32520 -12.21011 -11.98652 -11.87519 -11.76360 -11.44431 -11.37300 -11.23557 -11.16837 -10.76013 -10.16358 -9.97428 -8.91854 -7.95521 -6.05750 1.42966 1.44479 1.51905 2.46156 3.00517 3.28218 3.65679 3.82430 3.90047 4.13617 4.33688 4.37180 4.44494 4.45660 4.48439 4.56358 4.63670 4.71139 4.77277 4.80496 4.82217 4.88074 5.01248 5.07048 5.10941 5.14518 5.22838 5.26933 5.28653 5.32585 5.36313 5.47428 5.53419 5.60871 5.67856 5.98414 6.22957 6.34887 6.48244 6.55320 6.96419 7.50077 8.97906 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.006434 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.035752 B = 4351.027025 C = 4531.948135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.095 4.095 4 H 0.077 0.923 5 C -0.117 4.117 6 C 0.050 3.950 7 N -0.531 5.531 8 C 0.107 3.893 9 C 0.017 3.983 10 C -0.479 4.479 11 H 0.051 0.949 12 C 0.009 3.991 13 N -0.904 5.904 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.181 4.181 19 C -0.196 4.196 20 C 0.066 3.934 21 H 0.075 0.925 22 C -0.162 4.162 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 -9.365 -7.113 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.078 4.078 7 N -0.255 5.255 8 C -0.020 4.020 9 C 0.016 3.984 10 C -0.516 4.516 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.543 5.543 14 Si 0.782 3.218 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.219 4.219 19 C -0.235 4.235 20 C -0.042 4.042 21 H 0.093 0.907 22 C -0.220 4.220 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.286 -9.424 -6.583 16.110 hybrid contribution 0.679 0.634 0.120 0.937 sum -10.607 -8.790 -6.463 15.217 Atomic orbital electron populations 1.21750 0.94837 1.02022 1.01940 1.21450 0.96563 0.94316 1.02187 1.22451 0.93770 0.97590 0.97605 0.90460 1.22773 0.97767 0.97095 0.97812 1.23056 0.89291 0.95944 0.99460 1.63441 1.16483 1.10629 1.34925 1.21706 0.94605 0.92399 0.93322 1.19122 0.95453 0.87097 0.96681 1.20813 1.09871 1.00248 1.20705 0.93063 1.25718 1.00305 0.95433 0.97485 1.70179 1.40350 1.11013 1.32750 0.85651 0.79885 0.77982 0.78272 1.19724 1.21176 1.20173 1.22702 0.93082 1.08630 0.97447 1.22740 1.02192 1.01063 0.97492 1.22597 0.94797 0.95179 0.91598 0.90705 1.22307 1.01201 1.01970 0.96509 0.92750 0.92539 0.91966 0.91269 0.92228 0.90973 0.89614 0.92547 0.94870 0.96318 0.91147 0.93567 0.90502 0.91752 0.92261 0.90419 0.92821 0.90361 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.76 71.98 0.70 -1.62 16 2 C -0.11 -2.02 5.29 30.59 0.16 -1.86 16 3 C -0.09 -2.23 2.50 -9.61 -0.02 -2.26 16 4 H 0.08 1.75 7.86 -2.39 -0.02 1.73 16 5 C -0.12 -3.02 5.68 31.98 0.18 -2.84 16 6 C 0.05 1.75 4.78 86.77 0.42 2.17 16 7 N -0.53 -20.35 5.13 -860.55 -4.41 -24.76 16 8 C 0.11 4.53 3.74 86.30 0.32 4.86 16 9 C 0.02 0.88 2.25 -52.93 -0.12 0.77 16 10 C -0.48 -27.16 9.19 25.60 0.24 -26.92 16 11 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 12 C 0.01 0.49 5.28 84.66 0.45 0.94 16 13 N -0.90 -52.60 8.59 21.45 0.18 -52.41 16 14 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 C -0.18 -9.29 8.14 30.60 0.25 -9.04 16 19 C -0.20 -10.14 9.31 30.60 0.28 -9.85 16 20 C 0.07 1.96 3.61 45.26 0.16 2.12 16 21 H 0.07 2.27 7.82 -2.39 -0.02 2.25 16 22 C -0.16 -4.34 7.82 71.98 0.56 -3.77 16 23 H 0.05 0.87 7.48 -2.39 -0.02 0.85 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 28 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 29 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 30 H 0.06 2.24 7.21 -2.39 -0.02 2.22 16 31 H 0.03 1.17 6.76 -2.39 -0.02 1.16 16 32 H 0.02 0.76 6.76 -2.39 -0.02 0.74 16 33 H 0.07 2.96 5.73 -2.38 -0.01 2.95 16 34 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.08 4.47 6.20 -2.39 -0.01 4.45 16 36 H 0.06 2.97 5.62 -2.39 -0.01 2.96 16 37 H 0.06 2.74 8.09 -2.39 -0.02 2.72 16 38 H 0.08 4.47 6.37 -2.39 -0.02 4.45 16 39 H 0.05 1.58 6.35 -2.38 -0.02 1.57 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.39 7.06 -2.38 -0.02 1.37 16 Total: -1.00 -61.03 304.17 2.36 -58.67 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.98 Total: 18.83 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 3.58 Total: -47.30 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -4.23 Total: -77.18 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -61.03 2.36 -58.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.789 kcal (2) G-P(sol) polarization free energy of solvation -61.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds