Wall clock time and date at job start Sun Mar 29 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 H 1.09008 * 110.62529 * 51.90217 * 3 2 1 5 5 C 1.55132 * 110.86248 * 288.68917 * 3 2 1 6 6 C 1.54904 * 101.65905 * 205.89530 * 5 3 2 7 7 N 1.47848 * 104.79408 * 37.06464 * 6 5 3 8 8 C 1.46894 * 111.00000 * 213.63690 * 7 6 5 9 9 C 1.52997 * 109.47275 * 290.84473 * 8 7 6 10 10 C 1.50696 * 115.55420 * 325.58418 * 9 8 7 11 11 H 1.08005 * 119.99275 * 356.20519 * 10 9 8 12 12 C 1.37873 * 120.00526 * 176.48316 * 10 9 8 13 13 N 1.31516 * 119.99483 * 7.39842 * 12 10 9 14 14 Si 1.86793 * 120.00147 * 187.40529 * 12 10 9 15 15 H 1.48503 * 109.47373 * 94.98694 * 14 12 10 16 16 H 1.48500 * 109.47027 * 214.98147 * 14 12 10 17 17 H 1.48500 * 109.47469 * 334.98245 * 14 12 10 18 18 C 1.52997 * 117.49598 * 111.25760 * 9 8 7 19 19 C 1.53002 * 117.49693 * 179.91288 * 9 8 7 20 20 C 1.47439 * 108.56607 * 335.91151 * 7 6 5 21 21 H 1.09002 * 109.88928 * 120.55538 * 20 7 6 22 22 C 1.53006 * 109.88473 * 241.57911 * 20 7 6 23 23 H 1.09000 * 109.47632 * 59.99362 * 1 2 3 24 24 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46999 * 299.99881 * 1 2 3 26 26 H 1.09000 * 109.46762 * 240.01051 * 2 1 3 27 27 H 1.08993 * 109.47248 * 120.00638 * 2 1 3 28 28 H 1.09005 * 110.98656 * 323.98775 * 5 3 2 29 29 H 1.09003 * 110.99122 * 87.79741 * 5 3 2 30 30 H 1.09001 * 110.36888 * 278.24079 * 6 5 3 31 31 H 1.08994 * 110.37605 * 155.89870 * 6 5 3 32 32 H 1.09003 * 109.47120 * 170.84647 * 8 7 6 33 33 H 1.09002 * 109.46961 * 50.85054 * 8 7 6 34 34 H 0.97010 * 119.99891 * 179.97438 * 13 12 10 35 35 H 1.09007 * 117.50031 * 215.00242 * 18 9 8 36 36 H 1.08997 * 117.50377 * 0.02562 * 18 9 8 37 37 H 1.09002 * 117.49829 * 359.97438 * 19 9 8 38 38 H 1.09002 * 117.49790 * 144.97755 * 19 9 8 39 39 H 1.08995 * 109.46939 * 58.54998 * 22 20 7 40 40 H 1.09005 * 109.46871 * 178.55079 * 22 20 7 41 41 H 1.09002 * 109.47413 * 298.54459 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5745 2.0144 0.8029 5 6 1.7862 2.1182 -1.3732 6 6 2.8986 3.1958 -1.4022 7 7 4.0638 2.5530 -0.7580 8 6 4.8573 3.5341 -0.0061 9 6 5.5476 4.4881 -0.9829 10 6 5.9849 3.8768 -2.2891 11 1 5.8591 2.8175 -2.4583 12 6 6.5506 4.6686 -3.2657 13 7 6.8426 5.9245 -3.0066 14 14 6.9023 3.9577 -4.9569 15 1 5.7683 4.2603 -5.8667 16 1 8.1462 4.5613 -5.4987 17 1 7.0720 2.4863 -4.8499 18 6 5.0694 5.9412 -1.0080 19 6 6.4258 5.5921 -0.3906 20 6 3.5776 1.4776 0.1258 21 1 3.9995 0.5221 -0.1861 22 6 3.9749 1.7741 1.5733 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9118 1.4054 -2.1882 29 1 0.7977 2.5764 -1.4061 30 1 2.5898 4.0752 -0.8370 31 1 3.1360 3.4686 -2.4304 32 1 5.6098 3.0147 0.5874 33 1 4.2020 4.1018 0.6545 34 1 7.2410 6.4815 -3.6936 35 1 5.0710 6.4551 -1.9694 36 1 4.2634 6.2177 -0.3284 37 1 6.5115 5.6390 0.6951 38 1 7.3201 5.8760 -0.9455 39 1 3.5560 2.7339 1.8757 40 1 3.5902 0.9886 2.2238 41 1 5.0615 1.8109 1.6517 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307703639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:11 Heat of formation + Delta-G solvation = 14.595885 kcal Electronic energy + Delta-G solvation = -17988.277185 eV Core-core repulsion = 15482.259336 eV Total energy + Delta-G solvation = -2506.017849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69195 -38.20510 -35.09187 -33.47632 -32.38681 -30.67957 -27.66735 -26.51047 -26.20659 -23.44108 -22.59676 -21.54636 -20.94068 -20.15420 -17.83441 -17.01365 -16.46905 -16.23624 -15.59722 -15.38351 -15.15930 -14.64117 -14.27159 -13.95713 -13.40693 -13.20632 -13.14694 -13.00183 -12.84315 -12.74034 -12.39402 -12.29279 -12.13672 -12.01746 -11.90946 -11.84476 -11.43710 -11.37883 -11.20043 -11.16416 -10.67864 -10.21381 -9.94700 -8.84650 -7.92713 -5.98025 1.42300 1.44634 1.55078 2.49185 3.07707 3.29863 3.68290 3.86498 3.94609 3.97151 4.37957 4.41285 4.43966 4.48080 4.51100 4.61049 4.66295 4.72493 4.80278 4.81825 4.84574 4.86808 5.03034 5.11681 5.13396 5.18309 5.24051 5.29117 5.31467 5.34330 5.37291 5.47103 5.49621 5.62814 5.71105 6.01528 6.20978 6.37016 6.52486 6.69445 7.06431 7.57598 9.02441 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.007376 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.922920 B = 3795.249606 C = 4310.614344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.116 4.116 6 C 0.057 3.943 7 N -0.523 5.523 8 C 0.110 3.890 9 C 0.015 3.985 10 C -0.455 4.455 11 H 0.065 0.935 12 C 0.004 3.996 13 N -0.908 5.908 14 Si 0.951 3.049 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.270 1.270 18 C -0.190 4.190 19 C -0.193 4.193 20 C 0.064 3.936 21 H 0.077 0.923 22 C -0.162 4.162 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 -9.933 7.070 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.071 4.071 7 N -0.246 5.246 8 C -0.018 4.018 9 C 0.015 3.985 10 C -0.493 4.493 11 H 0.083 0.917 12 C -0.194 4.194 13 N -0.548 5.548 14 Si 0.778 3.222 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.195 1.195 18 C -0.228 4.228 19 C -0.231 4.231 20 C -0.043 4.043 21 H 0.095 0.905 22 C -0.219 4.219 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.757 -10.005 6.593 16.102 hybrid contribution 0.155 0.824 -0.481 0.967 sum -10.603 -9.181 6.112 15.299 Atomic orbital electron populations 1.21748 0.94932 1.01999 1.01863 1.21450 0.96480 0.94323 1.02218 1.22448 0.94226 0.97623 0.97097 0.90608 1.22757 0.97780 0.97306 0.97604 1.22795 0.89596 0.95679 0.98988 1.63444 1.20148 1.11260 1.29756 1.21649 0.95072 0.92071 0.93021 1.19235 0.97832 0.86211 0.95270 1.20849 1.35870 0.94778 0.97820 0.91710 1.25723 0.96194 0.95529 1.01908 1.70201 1.43850 1.07493 1.33299 0.85650 0.76987 0.78648 0.80927 1.20845 1.21630 1.19475 1.22653 0.95520 1.04081 1.00567 1.22751 0.95933 1.09075 0.95390 1.22621 0.94424 0.95620 0.91674 0.90538 1.22297 1.01550 1.01810 0.96291 0.92881 0.91931 0.92585 0.92171 0.91210 0.91031 0.89921 0.95431 0.92901 0.91450 0.96289 0.93838 0.90597 0.92666 0.92116 0.89975 0.93231 0.90431 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.80 71.98 0.71 -1.67 16 2 C -0.11 -2.04 5.30 30.59 0.16 -1.88 16 3 C -0.09 -2.28 2.44 -9.62 -0.02 -2.30 16 4 H 0.08 1.77 7.85 -2.38 -0.02 1.75 16 5 C -0.12 -3.17 5.93 31.98 0.19 -2.98 16 6 C 0.06 2.10 6.01 86.77 0.52 2.62 16 7 N -0.52 -20.03 4.08 -860.56 -3.51 -23.54 16 8 C 0.11 4.56 3.82 86.30 0.33 4.88 16 9 C 0.02 0.77 1.97 -52.93 -0.10 0.66 16 10 C -0.46 -25.25 8.40 25.60 0.21 -25.03 16 11 H 0.06 3.64 7.31 -2.91 -0.02 3.62 16 12 C 0.00 0.21 5.25 84.65 0.44 0.65 16 13 N -0.91 -52.72 8.65 21.45 0.19 -52.53 16 14 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.19 -9.74 9.30 30.62 0.28 -9.46 16 19 C -0.19 -9.89 9.39 30.62 0.29 -9.61 16 20 C 0.06 1.90 3.61 45.26 0.16 2.06 16 21 H 0.08 2.27 7.83 -2.39 -0.02 2.26 16 22 C -0.16 -4.22 7.84 71.98 0.56 -3.65 16 23 H 0.05 0.88 7.69 -2.39 -0.02 0.86 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 1.21 8.01 -2.39 -0.02 1.20 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.96 7.95 -2.38 -0.02 1.94 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.04 7.62 -2.39 -0.02 1.02 16 31 H 0.05 2.26 8.06 -2.39 -0.02 2.24 16 32 H 0.07 2.72 6.08 -2.39 -0.01 2.71 16 33 H 0.02 0.76 6.56 -2.39 -0.02 0.74 16 34 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.08 4.36 6.28 -2.38 -0.01 4.34 16 36 H 0.05 2.56 8.05 -2.39 -0.02 2.54 16 37 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 4.72 6.31 -2.39 -0.02 4.70 16 39 H 0.05 1.34 6.91 -2.39 -0.02 1.32 16 40 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.05 1.54 6.42 -2.39 -0.02 1.53 16 Total: -1.00 -60.04 308.74 3.41 -56.63 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.97 Total: 18.00 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 3.74 Total: -45.70 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.33 Total: -76.07 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -60.04 3.41 -56.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.222 kcal (2) G-P(sol) polarization free energy of solvation -60.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds