Wall clock time and date at job start Sun Mar 29 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 H 1.09001 * 110.35464 * 307.14546 * 3 2 1 5 5 C 1.54601 * 110.30701 * 69.28621 * 3 2 1 6 6 C 1.54936 * 102.92220 * 140.87481 * 5 3 2 7 7 N 1.48537 * 103.22881 * 322.58544 * 6 5 3 8 8 C 1.46899 * 111.00356 * 159.72335 * 7 6 5 9 9 C 1.52999 * 109.47078 * 58.27307 * 8 7 6 10 10 C 1.50703 * 115.54970 * 54.51621 * 9 8 7 11 11 H 1.08003 * 119.99476 * 0.07244 * 10 9 8 12 12 C 1.37868 * 119.99983 * 179.79779 * 10 9 8 13 13 N 1.31512 * 120.00385 * 0.26691 * 12 10 9 14 14 Si 1.86805 * 119.99950 * 180.27510 * 12 10 9 15 15 H 1.48504 * 109.47009 * 89.99626 * 14 12 10 16 16 H 1.48497 * 109.46946 * 209.99617 * 14 12 10 17 17 H 1.48498 * 109.47214 * 329.99790 * 14 12 10 18 18 C 1.52995 * 117.49880 * 200.18202 * 9 8 7 19 19 C 1.52995 * 117.50112 * 268.84291 * 9 8 7 20 20 C 1.47906 * 105.81778 * 39.20392 * 7 6 5 21 21 H 1.09006 * 109.90986 * 94.02526 * 20 7 6 22 22 C 1.52997 * 109.92073 * 215.31448 * 20 7 6 23 23 H 1.09007 * 109.47134 * 59.99917 * 1 2 3 24 24 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47200 * 299.99597 * 1 2 3 26 26 H 1.09007 * 109.47148 * 240.00421 * 2 1 3 27 27 H 1.08995 * 109.47455 * 120.00258 * 2 1 3 28 28 H 1.08998 * 110.72390 * 259.23099 * 5 3 2 29 29 H 1.08997 * 110.72197 * 22.33784 * 5 3 2 30 30 H 1.09004 * 110.66487 * 204.15417 * 6 5 3 31 31 H 1.08995 * 110.67120 * 81.01701 * 6 5 3 32 32 H 1.09007 * 109.46759 * 298.27340 * 8 7 6 33 33 H 1.08993 * 109.46936 * 178.27857 * 8 7 6 34 34 H 0.97001 * 120.00215 * 179.97438 * 13 12 10 35 35 H 1.09004 * 117.50010 * 215.00666 * 18 9 8 36 36 H 1.09005 * 117.50219 * 0.02597 * 18 9 8 37 37 H 1.09004 * 117.49589 * 359.97438 * 19 9 8 38 38 H 1.09003 * 117.49807 * 144.97389 * 19 9 8 39 39 H 1.09004 * 109.46825 * 58.55294 * 22 20 7 40 40 H 1.08993 * 109.47226 * 178.54893 * 22 20 7 41 41 H 1.09000 * 109.47332 * 298.55258 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0056 -0.8146 5 6 1.7353 2.1193 1.3562 6 6 3.0092 2.9618 1.6169 7 7 4.1011 2.0940 1.1058 8 6 5.3090 2.8802 0.8214 9 6 5.7611 3.5989 2.0942 10 6 5.9769 2.7168 3.2969 11 1 5.8130 1.6519 3.2219 12 6 6.3890 3.2684 4.4913 13 7 6.5888 4.5651 4.5826 14 14 6.6639 2.1740 5.9800 15 1 8.0729 1.7050 5.9961 16 1 6.3843 2.9439 7.2187 17 1 5.7533 1.0033 5.9087 18 6 6.6815 4.8103 1.9324 19 6 5.2194 5.0084 2.3400 20 6 3.5745 1.4668 -0.1259 21 1 3.8665 2.0550 -0.9960 22 6 4.1098 0.0393 -0.2537 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 0.8577 2.7610 1.2785 29 1 1.5971 1.3721 2.1377 30 1 3.1345 3.1498 2.6833 31 1 2.9709 3.8990 1.0618 32 1 5.0899 3.6156 0.0472 33 1 6.1020 2.2162 0.4777 34 1 6.8784 4.9533 5.4231 35 1 7.4431 4.9693 2.6958 36 1 6.9645 5.0956 0.9191 37 1 4.5412 5.4240 1.5947 38 1 5.0187 5.2976 3.3716 39 1 3.8163 -0.5386 0.6228 40 1 3.6972 -0.4246 -1.1495 41 1 5.1972 0.0639 -0.3252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307703640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:14 Heat of formation + Delta-G solvation = 25.109246 kcal Electronic energy + Delta-G solvation = -18001.432911 eV Core-core repulsion = 15495.870955 eV Total energy + Delta-G solvation = -2505.561956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.23945 -36.51024 -33.73417 -31.45071 -30.98764 -29.51687 -25.84586 -25.25000 -24.17082 -22.73966 -20.80682 -20.32170 -18.87979 -18.45795 -16.19871 -15.37635 -14.73720 -14.63330 -14.31264 -14.12564 -13.54793 -13.28326 -13.04383 -12.41470 -12.16828 -11.93172 -11.65659 -11.43576 -11.13368 -11.00205 -10.93050 -10.77428 -10.60096 -10.48181 -10.22963 -10.14283 -10.09690 -10.01604 -9.86372 -9.27319 -8.73752 -8.24070 -7.95334 -7.54367 -5.84769 -3.87042 3.35405 3.42316 3.47380 4.49462 4.61872 4.86890 4.96788 5.07837 5.23070 5.43132 5.47662 5.62461 5.68789 5.76468 5.87340 5.95136 5.99847 6.00245 6.03630 6.14081 6.16760 6.29306 6.32453 6.35752 6.41424 6.51129 6.61448 6.66439 6.70835 6.79432 6.87553 7.10580 7.27302 7.39931 7.72574 7.78492 7.96928 8.16456 8.29666 8.66410 9.11767 9.67015 11.11854 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.007291 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.153736 B = 3839.379961 C = 4186.051419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.093 4.093 4 H 0.065 0.935 5 C -0.120 4.120 6 C 0.050 3.950 7 N -0.490 5.490 8 C 0.095 3.905 9 C 0.024 3.976 10 C -0.449 4.449 11 H 0.067 0.933 12 C 0.052 3.948 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.274 1.274 18 C -0.191 4.191 19 C -0.189 4.189 20 C 0.060 3.940 21 H 0.039 0.961 22 C -0.132 4.132 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.008 0.992 33 H 0.061 0.939 34 H 0.256 0.744 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 -5.863 -8.448 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.112 4.112 4 H 0.083 0.917 5 C -0.158 4.158 6 C -0.078 4.078 7 N -0.213 5.213 8 C -0.032 4.032 9 C 0.023 3.977 10 C -0.486 4.486 11 H 0.085 0.915 12 C -0.148 4.148 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.199 1.199 18 C -0.230 4.230 19 C -0.227 4.227 20 C -0.049 4.049 21 H 0.057 0.943 22 C -0.190 4.190 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.729 -6.138 -7.920 13.289 hybrid contribution 0.069 0.381 0.144 0.413 sum -8.660 -5.757 -7.776 12.985 Atomic orbital electron populations 1.21812 0.96571 1.01016 1.01577 1.21705 0.94910 0.96309 1.02257 1.22040 0.95016 0.96250 0.97934 0.91658 1.22615 0.97594 0.99066 0.96526 1.23085 0.89050 0.93442 1.02192 1.64640 1.03741 1.29380 1.23573 1.21743 0.91452 0.94064 0.95963 1.18951 0.99370 0.86507 0.92860 1.20586 1.41681 0.93792 0.92588 0.91473 1.25030 0.95904 0.95031 0.98839 1.70025 1.47205 1.10013 1.25348 0.86558 0.78372 0.80608 0.82243 1.20964 1.21559 1.19853 1.22840 0.95420 1.06902 0.97814 1.22835 0.94896 1.03863 1.01067 1.22422 0.93366 0.96315 0.92811 0.94285 1.21810 1.00581 0.95792 1.00820 0.93268 0.93220 0.92679 0.91937 0.91263 0.92150 0.90956 0.88866 0.94922 0.97352 0.92021 0.93415 0.87163 0.94389 0.94607 0.87346 0.91737 0.93207 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.78 37.16 0.36 -1.19 16 2 C -0.11 -1.34 4.12 -26.73 -0.11 -1.45 16 3 C -0.09 -1.28 2.99 -89.26 -0.27 -1.54 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -1.79 5.87 -24.87 -0.15 -1.94 16 6 C 0.05 0.94 5.06 -1.90 -0.01 0.93 16 7 N -0.49 -9.56 4.67 -222.57 -1.04 -10.60 16 8 C 0.10 2.05 4.75 -3.83 -0.02 2.04 16 9 C 0.02 0.59 1.57 -155.66 -0.24 0.35 16 10 C -0.45 -12.26 8.88 -34.44 -0.31 -12.56 16 11 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 12 C 0.05 1.42 5.27 -17.82 -0.09 1.32 16 13 N -0.89 -24.90 8.59 55.43 0.48 -24.42 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.19 -4.85 9.38 -26.70 -0.25 -5.10 16 19 C -0.19 -4.72 8.23 -26.70 -0.22 -4.94 16 20 C 0.06 0.95 3.09 -66.64 -0.21 0.74 16 21 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 22 C -0.13 -1.90 8.34 37.16 0.31 -1.59 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.57 7.58 -51.93 -0.39 0.18 16 26 H 0.06 0.68 6.44 -51.92 -0.33 0.35 16 27 H 0.07 0.88 6.93 -51.93 -0.36 0.52 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.10 7.76 -51.93 -0.40 0.69 16 30 H 0.09 2.01 7.80 -51.93 -0.41 1.60 16 31 H 0.03 0.62 7.43 -51.93 -0.39 0.23 16 32 H 0.01 0.18 7.92 -51.92 -0.41 -0.24 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.11 3.07 6.28 -51.93 -0.33 2.74 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.83 7.64 -51.93 -0.40 0.43 16 38 H 0.11 2.99 6.29 -51.93 -0.33 2.67 16 39 H 0.06 0.96 6.80 -51.93 -0.35 0.60 16 40 H 0.05 0.59 6.74 -51.93 -0.35 0.24 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -27.56 307.84 -9.49 -37.05 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.35 Total: 1.77 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -1.20 Total: -24.93 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.56 Total: -35.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.56 -9.49 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.162 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds