Wall clock time and date at job start Sun Mar 29 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 H 1.09001 * 110.35464 * 307.14546 * 3 2 1 5 5 C 1.54601 * 110.30701 * 69.28621 * 3 2 1 6 6 C 1.54936 * 102.92220 * 140.87481 * 5 3 2 7 7 N 1.48537 * 103.22881 * 322.58544 * 6 5 3 8 8 C 1.46899 * 111.00356 * 159.72335 * 7 6 5 9 9 C 1.52999 * 109.47078 * 58.27307 * 8 7 6 10 10 C 1.50703 * 115.54970 * 54.51621 * 9 8 7 11 11 H 1.08003 * 119.99476 * 0.07244 * 10 9 8 12 12 C 1.37868 * 119.99983 * 179.79779 * 10 9 8 13 13 N 1.31512 * 120.00385 * 0.26691 * 12 10 9 14 14 Si 1.86805 * 119.99950 * 180.27510 * 12 10 9 15 15 H 1.48504 * 109.47009 * 89.99626 * 14 12 10 16 16 H 1.48497 * 109.46946 * 209.99617 * 14 12 10 17 17 H 1.48498 * 109.47214 * 329.99790 * 14 12 10 18 18 C 1.52995 * 117.49880 * 200.18202 * 9 8 7 19 19 C 1.52995 * 117.50112 * 268.84291 * 9 8 7 20 20 C 1.47906 * 105.81778 * 39.20392 * 7 6 5 21 21 H 1.09006 * 109.90986 * 94.02526 * 20 7 6 22 22 C 1.52997 * 109.92073 * 215.31448 * 20 7 6 23 23 H 1.09007 * 109.47134 * 59.99917 * 1 2 3 24 24 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47200 * 299.99597 * 1 2 3 26 26 H 1.09007 * 109.47148 * 240.00421 * 2 1 3 27 27 H 1.08995 * 109.47455 * 120.00258 * 2 1 3 28 28 H 1.08998 * 110.72390 * 259.23099 * 5 3 2 29 29 H 1.08997 * 110.72197 * 22.33784 * 5 3 2 30 30 H 1.09004 * 110.66487 * 204.15417 * 6 5 3 31 31 H 1.08995 * 110.67120 * 81.01701 * 6 5 3 32 32 H 1.09007 * 109.46759 * 298.27340 * 8 7 6 33 33 H 1.08993 * 109.46936 * 178.27857 * 8 7 6 34 34 H 0.97001 * 120.00215 * 179.97438 * 13 12 10 35 35 H 1.09004 * 117.50010 * 215.00666 * 18 9 8 36 36 H 1.09005 * 117.50219 * 0.02597 * 18 9 8 37 37 H 1.09004 * 117.49589 * 359.97438 * 19 9 8 38 38 H 1.09003 * 117.49807 * 144.97389 * 19 9 8 39 39 H 1.09004 * 109.46825 * 58.55294 * 22 20 7 40 40 H 1.08993 * 109.47226 * 178.54893 * 22 20 7 41 41 H 1.09000 * 109.47332 * 298.55258 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0056 -0.8146 5 6 1.7353 2.1193 1.3562 6 6 3.0092 2.9618 1.6169 7 7 4.1011 2.0940 1.1058 8 6 5.3090 2.8802 0.8214 9 6 5.7611 3.5989 2.0942 10 6 5.9769 2.7168 3.2969 11 1 5.8130 1.6519 3.2219 12 6 6.3890 3.2684 4.4913 13 7 6.5888 4.5651 4.5826 14 14 6.6639 2.1740 5.9800 15 1 8.0729 1.7050 5.9961 16 1 6.3843 2.9439 7.2187 17 1 5.7533 1.0033 5.9087 18 6 6.6815 4.8103 1.9324 19 6 5.2194 5.0084 2.3400 20 6 3.5745 1.4668 -0.1259 21 1 3.8665 2.0550 -0.9960 22 6 4.1098 0.0393 -0.2537 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 0.8577 2.7610 1.2785 29 1 1.5971 1.3721 2.1377 30 1 3.1345 3.1498 2.6833 31 1 2.9709 3.8990 1.0618 32 1 5.0899 3.6156 0.0472 33 1 6.1020 2.2162 0.4777 34 1 6.8784 4.9533 5.4231 35 1 7.4431 4.9693 2.6958 36 1 6.9645 5.0956 0.9191 37 1 4.5412 5.4240 1.5947 38 1 5.0187 5.2976 3.3716 39 1 3.8163 -0.5386 0.6228 40 1 3.6972 -0.4246 -1.1495 41 1 5.1972 0.0639 -0.3252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307703640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:13 Heat of formation + Delta-G solvation = 10.780544 kcal Electronic energy + Delta-G solvation = -18002.054250 eV Core-core repulsion = 15495.870955 eV Total energy + Delta-G solvation = -2506.183295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60629 -38.33105 -35.05596 -33.46451 -32.24457 -30.80189 -27.80355 -26.59626 -25.74156 -23.80721 -22.63791 -21.88089 -20.78929 -19.64998 -18.06331 -17.08789 -16.49659 -16.03869 -15.57091 -15.36527 -15.20745 -14.74526 -14.42365 -14.03372 -13.37883 -13.18213 -13.05658 -12.94803 -12.90906 -12.50654 -12.36675 -12.23818 -12.14013 -12.08988 -11.96084 -11.87221 -11.43176 -11.26103 -11.19152 -11.06306 -10.75703 -10.24779 -9.99981 -9.06176 -7.95623 -6.03959 1.42035 1.43805 1.54263 2.46778 3.02269 3.28020 3.72036 3.85251 3.96296 4.00627 4.37501 4.40025 4.44525 4.51100 4.52285 4.59210 4.72280 4.75198 4.78868 4.82555 4.87544 4.95311 4.99693 5.10728 5.15049 5.19785 5.22414 5.28830 5.33862 5.35113 5.44609 5.51350 5.52364 5.62733 5.68484 5.97030 6.19203 6.26718 6.44306 6.59960 6.98556 7.52304 8.98888 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.007291 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.153736 B = 3839.379961 C = 4186.051419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.086 4.086 4 H 0.081 0.919 5 C -0.111 4.111 6 C 0.051 3.949 7 N -0.508 5.508 8 C 0.106 3.894 9 C 0.018 3.982 10 C -0.464 4.464 11 H 0.056 0.944 12 C 0.007 3.993 13 N -0.906 5.906 14 Si 0.953 3.047 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.271 1.271 18 C -0.195 4.195 19 C -0.180 4.180 20 C 0.055 3.945 21 H 0.041 0.959 22 C -0.127 4.127 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -7.118 -9.745 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.105 4.105 4 H 0.099 0.901 5 C -0.149 4.149 6 C -0.077 4.077 7 N -0.232 5.232 8 C -0.022 4.022 9 C 0.018 3.982 10 C -0.502 4.502 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.780 3.220 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.196 1.196 18 C -0.234 4.234 19 C -0.218 4.218 20 C -0.053 4.053 21 H 0.059 0.941 22 C -0.185 4.185 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.066 -7.401 -9.226 15.530 hybrid contribution 0.493 0.791 0.546 1.081 sum -9.573 -6.609 -8.679 14.514 Atomic orbital electron populations 1.21785 0.95189 1.01902 1.01826 1.21659 0.96065 0.94695 1.02322 1.22034 0.93312 0.97757 0.97363 0.90089 1.22559 0.96306 0.98714 0.97326 1.22962 0.90933 0.94077 0.99747 1.64575 1.03504 1.29139 1.25945 1.21537 0.92498 0.94071 0.94135 1.19082 0.98933 0.86407 0.93827 1.20761 1.41922 0.93620 0.93876 0.92529 1.25698 0.95852 0.96210 1.01271 1.70172 1.47554 1.11151 1.25695 0.85627 0.78243 0.78995 0.79156 1.20534 1.21344 1.19615 1.22749 0.94795 1.07707 0.98110 1.22620 0.95038 1.04252 0.99871 1.22571 0.95026 0.96661 0.91074 0.94109 1.21790 0.99822 0.94922 1.01945 0.92314 0.92102 0.93132 0.90585 0.92491 0.90118 0.91422 0.92619 0.95348 0.96660 0.92268 0.93626 0.89910 0.92179 0.92780 0.90222 0.92431 0.90193 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.78 71.98 0.70 -1.84 16 2 C -0.11 -2.23 4.12 30.59 0.13 -2.11 16 3 C -0.09 -2.10 2.99 -9.91 -0.03 -2.13 16 4 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.11 -3.13 5.87 31.80 0.19 -2.95 16 6 C 0.05 1.89 5.06 86.65 0.44 2.33 16 7 N -0.51 -19.56 4.67 -858.08 -4.01 -23.56 16 8 C 0.11 4.51 4.75 86.30 0.41 4.92 16 9 C 0.02 0.92 1.57 -52.93 -0.08 0.83 16 10 C -0.46 -25.81 8.88 25.60 0.23 -25.58 16 11 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 12 C 0.01 0.41 5.27 84.65 0.45 0.86 16 13 N -0.91 -52.05 8.59 21.44 0.18 -51.87 16 14 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 C -0.19 -9.98 9.38 30.62 0.29 -9.69 16 19 C -0.18 -9.11 8.23 30.62 0.25 -8.86 16 20 C 0.05 1.64 3.09 45.06 0.14 1.78 16 21 H 0.04 1.22 7.67 -2.38 -0.02 1.20 16 22 C -0.13 -3.39 8.34 71.98 0.60 -2.79 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.90 7.58 -2.39 -0.02 0.88 16 26 H 0.08 1.35 6.44 -2.38 -0.02 1.34 16 27 H 0.06 1.31 6.93 -2.39 -0.02 1.30 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.97 7.76 -2.39 -0.02 1.95 16 30 H 0.06 2.47 7.80 -2.39 -0.02 2.45 16 31 H 0.03 1.06 7.43 -2.39 -0.02 1.04 16 32 H 0.02 0.63 7.92 -2.38 -0.02 0.61 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.08 4.72 6.28 -2.38 -0.01 4.70 16 36 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.05 2.50 7.64 -2.38 -0.02 2.48 16 38 H 0.08 4.53 6.29 -2.39 -0.02 4.51 16 39 H 0.06 1.61 6.80 -2.38 -0.02 1.59 16 40 H 0.08 1.63 6.74 -2.39 -0.02 1.62 16 41 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -59.44 307.84 2.88 -56.57 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.97 Total: 17.32 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 3.71 Total: -45.23 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -3.82 Total: -75.43 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -59.44 2.88 -56.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.346 kcal (2) G-P(sol) polarization free energy of solvation -59.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds