Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47535 * 2 1 4 4 H 1.09003 * 110.27327 * 55.63610 * 3 2 1 5 5 C 1.54596 * 110.30721 * 293.54888 * 3 2 1 6 6 C 1.54941 * 102.91777 * 219.02392 * 5 3 2 7 7 N 1.48535 * 103.22802 * 37.41288 * 6 5 3 8 8 C 1.46896 * 111.00008 * 200.27543 * 7 6 5 9 9 C 1.53001 * 109.47118 * 77.84416 * 8 7 6 10 10 C 1.50703 * 115.54963 * 305.32754 * 9 8 7 11 11 H 1.07998 * 119.99928 * 90.15810 * 10 9 8 12 12 C 1.37882 * 119.99736 * 270.16532 * 10 9 8 13 13 N 1.31510 * 119.99707 * 182.47621 * 12 10 9 14 14 Si 1.86802 * 119.99923 * 2.47610 * 12 10 9 15 15 H 1.48507 * 109.46738 * 270.00235 * 14 12 10 16 16 H 1.48498 * 109.47423 * 30.00023 * 14 12 10 17 17 H 1.48499 * 109.47049 * 150.00500 * 14 12 10 18 18 C 1.53006 * 117.49831 * 90.99174 * 9 8 7 19 19 C 1.53004 * 117.50077 * 159.65430 * 9 8 7 20 20 C 1.47900 * 105.82168 * 320.79553 * 7 6 5 21 21 H 1.09007 * 109.91590 * 265.97798 * 20 7 6 22 22 C 1.53001 * 109.92086 * 144.68125 * 20 7 6 23 23 H 1.09001 * 109.47232 * 300.00189 * 1 2 3 24 24 H 1.09011 * 109.46814 * 59.99843 * 1 2 3 25 25 H 1.09001 * 109.47891 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46853 * 239.99844 * 2 1 3 27 27 H 1.08998 * 109.46949 * 120.00329 * 2 1 3 28 28 H 1.09003 * 110.72752 * 100.67327 * 5 3 2 29 29 H 1.08996 * 110.87768 * 337.44823 * 5 3 2 30 30 H 1.09000 * 110.67004 * 278.97936 * 6 5 3 31 31 H 1.09005 * 110.80931 * 155.91389 * 6 5 3 32 32 H 1.08994 * 109.47752 * 317.84230 * 8 7 6 33 33 H 1.09004 * 109.46807 * 197.83627 * 8 7 6 34 34 H 0.96999 * 120.00180 * 354.95628 * 13 12 10 35 35 H 1.09001 * 117.49835 * 215.00305 * 18 9 8 36 36 H 1.08994 * 117.49750 * 0.02899 * 18 9 8 37 37 H 1.08998 * 117.49719 * 359.97334 * 19 9 8 38 38 H 1.09004 * 117.49437 * 144.97540 * 19 9 8 39 39 H 1.09000 * 109.46884 * 61.45386 * 22 20 7 40 40 H 1.09001 * 109.47137 * 181.45111 * 22 20 7 41 41 H 1.08995 * 109.47111 * 301.45300 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6219 1.9909 0.8440 5 6 1.6728 2.1414 -1.3291 6 6 2.9326 2.9905 -1.6336 7 7 4.0476 2.1163 -1.1877 8 6 5.2664 2.8998 -0.9457 9 6 5.1537 3.6148 0.4023 10 6 3.9312 4.4780 0.5800 11 1 3.0280 4.0560 0.9953 12 6 3.9659 5.8064 0.2122 13 7 2.9153 6.5717 0.4121 14 14 5.5053 6.5190 -0.5702 15 1 6.4010 7.0461 0.4906 16 1 6.2110 5.4569 -1.3312 17 1 5.1277 7.6205 -1.4917 18 6 5.6885 2.8848 1.6361 19 6 6.4513 4.0827 1.0645 20 6 3.5788 1.4674 0.0559 21 1 3.9096 2.0413 0.9216 22 6 4.1208 0.0388 0.1349 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.7990 2.7802 -1.2005 29 1 1.5011 1.4095 -2.1184 30 1 2.9188 3.9182 -1.0615 31 1 3.0104 3.1991 -2.7006 32 1 5.3879 3.6372 -1.7390 33 1 6.1295 2.2342 -0.9328 34 1 2.0918 6.1863 0.7502 35 1 5.1561 3.0290 2.5762 36 1 6.1209 1.8955 1.4874 37 1 7.3852 3.8807 0.5400 38 1 6.4207 5.0151 1.6283 39 1 5.2103 0.0643 0.1570 40 1 3.7501 -0.4409 1.0407 41 1 3.7881 -0.5246 -0.7368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307703641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = 22.898000 kcal Electronic energy + Delta-G solvation = -18675.036198 eV Core-core repulsion = 16169.378355 eV Total energy + Delta-G solvation = -2505.657842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45776 -36.57540 -33.45751 -32.32980 -30.64731 -29.52162 -25.60198 -25.00764 -24.15084 -22.65216 -21.67483 -20.18840 -19.00775 -18.03659 -16.98033 -15.50299 -14.80228 -14.35413 -14.19795 -13.76534 -13.69906 -13.04009 -12.93461 -12.72706 -12.34065 -12.08024 -11.84892 -11.41543 -11.14883 -11.06534 -10.93702 -10.68097 -10.41910 -10.34169 -10.26072 -10.14853 -9.96890 -9.86060 -9.65467 -9.29959 -8.75596 -8.61180 -8.39044 -7.33957 -6.49396 -4.13606 3.39054 3.44821 3.60849 4.46266 4.79665 5.01177 5.14380 5.22803 5.26342 5.35200 5.64298 5.70231 5.82144 5.88455 5.96510 6.02354 6.08657 6.14012 6.16019 6.17484 6.22771 6.30846 6.38810 6.39858 6.46330 6.51084 6.56861 6.66090 6.72374 6.75164 6.80851 6.88856 7.09887 7.11022 7.12583 7.41773 7.86488 7.98157 8.12704 8.27674 8.79697 9.49356 10.88817 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.009866 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.052028 B = 2837.433685 C = 3275.521911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.088 4.088 4 H 0.066 0.934 5 C -0.111 4.111 6 C 0.007 3.993 7 N -0.502 5.502 8 C 0.075 3.925 9 C -0.020 4.020 10 C -0.554 4.554 11 H 0.064 0.936 12 C 0.034 3.966 13 N -0.909 5.909 14 Si 1.053 2.947 15 H -0.288 1.288 16 H -0.273 1.273 17 H -0.294 1.294 18 C -0.185 4.185 19 C -0.204 4.204 20 C 0.051 3.949 21 H 0.093 0.907 22 C -0.132 4.132 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -10.221 -1.571 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.084 0.916 5 C -0.149 4.149 6 C -0.120 4.120 7 N -0.224 5.224 8 C -0.053 4.053 9 C -0.022 4.022 10 C -0.591 4.591 11 H 0.082 0.918 12 C -0.171 4.171 13 N -0.542 5.542 14 Si 0.883 3.117 15 H -0.214 1.214 16 H -0.199 1.199 17 H -0.221 1.221 18 C -0.222 4.222 19 C -0.242 4.242 20 C -0.057 4.057 21 H 0.110 0.890 22 C -0.189 4.189 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.013 -9.202 -2.549 9.602 hybrid contribution -0.769 -0.774 1.293 1.692 sum 0.244 -9.976 -1.256 10.058 Atomic orbital electron populations 1.21812 0.96774 1.00635 1.01717 1.21700 0.94800 0.96999 1.01590 1.21939 0.95712 0.94992 0.98022 0.91585 1.22424 0.97912 0.98224 0.96370 1.23807 0.88896 0.99261 1.00017 1.64991 1.03917 1.26873 1.26669 1.21959 0.92075 0.94636 0.96677 1.20119 0.93762 0.98040 0.90294 1.21299 0.96657 0.95676 1.45475 0.91824 1.25772 1.03007 0.93472 0.94812 1.70837 1.03009 1.37660 1.42724 0.83848 0.75131 0.75797 0.76967 1.21436 1.19875 1.22108 1.22850 1.05286 0.94357 0.99707 1.22978 0.96229 0.98531 1.06440 1.22627 0.92903 0.94972 0.95203 0.88961 1.21822 1.00007 0.96829 1.00262 0.93127 0.92798 0.93511 0.91860 0.92268 0.92459 0.92467 0.86989 0.92715 0.91721 0.93442 0.92246 0.90152 0.91119 0.90974 0.89611 0.93810 0.93387 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.76 37.16 0.36 -1.56 16 2 C -0.11 -1.61 4.11 -26.73 -0.11 -1.72 16 3 C -0.09 -1.51 3.02 -89.27 -0.27 -1.78 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C -0.11 -1.97 5.72 -24.87 -0.14 -2.12 16 6 C 0.01 0.15 6.15 -1.89 -0.01 0.14 16 7 N -0.50 -10.01 5.17 -222.57 -1.15 -11.16 16 8 C 0.08 1.58 5.53 -3.83 -0.02 1.56 16 9 C -0.02 -0.44 0.07 -155.65 -0.01 -0.45 16 10 C -0.55 -14.14 5.28 -34.44 -0.18 -14.32 16 11 H 0.06 1.78 7.62 -52.49 -0.40 1.37 16 12 C 0.03 0.93 5.13 -17.82 -0.09 0.84 16 13 N -0.91 -26.55 13.70 55.43 0.76 -25.79 16 14 Si 1.05 25.04 25.16 -169.99 -4.28 20.77 16 15 H -0.29 -6.68 7.08 56.52 0.40 -6.28 16 16 H -0.27 -6.04 5.74 56.52 0.32 -5.72 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 C -0.18 -3.73 7.82 -26.69 -0.21 -3.94 16 19 C -0.20 -4.28 7.56 -26.69 -0.20 -4.49 16 20 C 0.05 0.95 2.29 -66.64 -0.15 0.80 16 21 H 0.09 1.92 3.42 -51.92 -0.18 1.75 16 22 C -0.13 -2.09 8.36 37.16 0.31 -1.78 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.68 7.48 -51.92 -0.39 0.30 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.89 6.84 -51.92 -0.36 0.54 16 27 H 0.06 0.80 6.62 -51.93 -0.34 0.46 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 30 H 0.11 2.70 4.31 -51.93 -0.22 2.48 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.42 6.47 -51.93 -0.34 1.08 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.27 7.79 8.72 -40.82 -0.36 7.44 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.09 1.90 7.02 -51.93 -0.36 1.54 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.69 6.80 -51.93 -0.35 0.33 16 41 H 0.05 0.83 6.73 -51.93 -0.35 0.48 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -26.65 295.97 -8.09 -34.74 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.15 Total: 5.81 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -0.73 Total: -28.82 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.39 Total: -36.95 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.28 Total: 20.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.65 -8.09 -34.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307703641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.637 kcal (2) G-P(sol) polarization free energy of solvation -26.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds