Wall clock time and date at job start Sun Mar 29 2020 21:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00604 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00404 * 3 2 1 6 6 H 1.48501 * 109.47273 * 150.00575 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.52967 * 109.43109 * 275.23526 * 12 11 10 14 14 C 1.53145 * 109.43083 * 178.24033 * 13 12 11 15 15 C 1.52720 * 109.23867 * 57.82689 * 14 13 12 16 16 C 1.53422 * 113.50459 * 74.68543 * 15 14 13 17 17 C 1.53846 * 86.97083 * 89.40670 * 16 15 14 18 18 C 1.53395 * 113.55197 * 172.54757 * 15 14 13 19 19 C 1.52726 * 112.93762 * 303.67868 * 15 14 13 20 20 C 1.52970 * 109.43109 * 154.99980 * 12 11 10 21 21 H 0.96997 * 120.00332 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 23 23 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 24 24 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 25 25 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 26 26 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 27 27 H 1.09003 * 109.43244 * 35.09301 * 12 11 10 28 28 H 1.08997 * 109.47846 * 298.22639 * 13 12 11 29 29 H 1.08997 * 109.48264 * 58.25573 * 13 12 11 30 30 H 1.08999 * 109.51303 * 297.89600 * 14 13 12 31 31 H 1.09001 * 109.51080 * 177.75300 * 14 13 12 32 32 H 1.08999 * 113.63336 * 203.92171 * 16 15 14 33 33 H 1.08996 * 113.62874 * 334.88433 * 16 15 14 34 34 H 1.09005 * 113.60083 * 270.59229 * 17 16 15 35 35 H 1.08994 * 113.60629 * 139.71843 * 17 16 15 36 36 H 1.09000 * 113.63015 * 25.16127 * 18 15 14 37 37 H 1.09002 * 113.63252 * 156.11462 * 18 15 14 38 38 H 1.08999 * 109.50489 * 296.39707 * 19 15 14 39 39 H 1.08994 * 109.55434 * 176.27595 * 19 15 14 40 40 H 1.09000 * 109.48078 * 301.74892 * 20 12 11 41 41 H 1.09001 * 109.47719 * 61.76980 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 7 5.4904 -2.6366 -0.0022 12 6 6.0169 -4.0081 -0.0027 13 6 6.0775 -4.5304 1.4337 14 6 6.5848 -5.9754 1.4294 15 6 7.9569 -6.0250 0.7607 16 6 9.0865 -5.4729 1.6399 17 6 9.2489 -6.9018 2.1866 18 6 8.6394 -7.3950 0.8628 19 6 7.9505 -5.4504 -0.6544 20 6 7.4193 -4.0146 -0.6135 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6577 -3.1506 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 5.8514 -2.1108 -0.7840 27 1 5.3611 -4.6480 -0.5932 28 1 6.7558 -3.9089 2.0182 29 1 5.0816 -4.4963 1.8753 30 1 5.8874 -6.6045 0.8763 31 1 6.6665 -6.3357 2.4549 32 1 9.9489 -5.1212 1.0737 33 1 8.7476 -4.7552 2.3870 34 1 8.6270 -7.1092 3.0574 35 1 10.2879 -7.2001 2.3265 36 1 7.9411 -8.2229 0.9850 37 1 9.3782 -7.5744 0.0817 38 1 7.3079 -6.0583 -1.2911 39 1 8.9648 -5.4520 -1.0534 40 1 7.3766 -3.6140 -1.6263 41 1 8.0829 -3.3986 -0.0066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461428129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:44 Heat of formation + Delta-G solvation = -11.164848 kcal Electronic energy + Delta-G solvation = -17131.778630 eV Core-core repulsion = 14624.643712 eV Total energy + Delta-G solvation = -2507.134918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44031 -36.99936 -34.02827 -32.36213 -30.89754 -29.82729 -27.03618 -25.75065 -23.87150 -23.09159 -21.89114 -20.36497 -20.00659 -18.05190 -16.73545 -15.77417 -15.52350 -15.24789 -14.41489 -14.06930 -13.91034 -13.70085 -13.40970 -12.99827 -12.52911 -12.50133 -12.33166 -12.12429 -11.70335 -11.52203 -11.14541 -11.10146 -11.05165 -10.90752 -10.67562 -10.09693 -10.09060 -9.92554 -9.88013 -9.77999 -9.55939 -9.19143 -8.51282 -7.86548 -6.02073 -4.00186 3.33942 3.41301 3.47836 4.30639 4.46778 4.48663 4.50739 4.66321 4.79417 4.95134 5.04698 5.31259 5.32471 5.33043 5.45083 5.55062 5.56646 5.59710 5.65400 5.72554 5.74632 5.82854 5.89119 5.96111 6.03270 6.16203 6.20266 6.24338 6.28297 6.33044 6.40485 6.49360 6.58970 6.83583 7.20423 7.42365 7.68614 7.81540 7.97710 8.56140 9.02210 9.60535 11.11363 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053970 B = 0.004260 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.684145 B = 6571.266370 C = 6688.979085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.693 5.693 12 C 0.088 3.912 13 C -0.104 4.104 14 C -0.094 4.094 15 C -0.076 4.076 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.099 4.099 20 C -0.118 4.118 21 H 0.263 0.737 22 H 0.025 0.975 23 H 0.008 0.992 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.334 0.666 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.225 -12.934 1.237 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.323 5.323 12 C -0.022 4.022 13 C -0.143 4.143 14 C -0.132 4.132 15 C -0.076 4.076 16 C -0.169 4.169 17 C -0.180 4.180 18 C -0.173 4.173 19 C -0.137 4.137 20 C -0.156 4.156 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.103 -12.739 1.923 23.042 hybrid contribution 0.066 0.638 -0.983 1.173 sum 19.170 -12.101 0.941 22.689 Atomic orbital electron populations 1.69915 1.06330 1.26893 1.51251 1.25011 0.94729 0.99217 0.94504 0.86743 0.80508 0.83421 0.78438 1.20418 1.21444 1.18753 1.21087 0.89460 0.94482 1.50879 0.91169 1.19548 0.96598 0.91992 0.96643 1.21980 0.84281 0.99810 0.99305 1.60621 1.09764 1.12419 1.49514 1.21453 0.94410 0.90364 0.95947 1.21496 1.01471 0.94528 0.96762 1.21317 0.94435 0.97519 0.99944 1.21568 0.94939 0.95739 0.95382 1.22933 0.98245 0.96461 0.99235 1.22839 1.00603 0.97103 0.97419 1.22953 0.99697 0.96890 0.97732 1.21434 1.00609 0.96003 0.95683 1.21693 0.96764 0.96754 1.00384 0.92757 0.95702 0.97372 0.96216 0.91813 0.84837 0.94470 0.91462 0.91784 0.91981 0.91855 0.90448 0.91276 0.90331 0.91945 0.91686 0.90412 0.92139 0.92065 0.92398 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.55 5.42 -3.82 -0.02 1.53 16 11 N -0.69 -11.93 6.31 -106.75 -0.67 -12.60 16 12 C 0.09 1.26 2.44 -67.74 -0.17 1.09 16 13 C -0.10 -1.40 5.35 -26.67 -0.14 -1.55 16 14 C -0.09 -1.03 5.03 -26.80 -0.13 -1.17 16 15 C -0.08 -0.74 0.76 -154.37 -0.12 -0.86 16 16 C -0.13 -1.22 6.82 -26.07 -0.18 -1.40 16 17 C -0.14 -1.18 7.73 -25.85 -0.20 -1.38 16 18 C -0.14 -1.15 7.23 -26.08 -0.19 -1.34 16 19 C -0.10 -1.00 5.09 -26.80 -0.14 -1.14 16 20 C -0.12 -1.38 5.13 -26.67 -0.14 -1.52 16 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 22 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 23 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 24 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 25 H 0.06 1.36 7.39 -51.93 -0.38 0.97 16 26 H 0.33 5.45 8.32 -39.29 -0.33 5.13 16 27 H 0.04 0.57 7.80 -51.93 -0.40 0.16 16 28 H 0.07 0.93 7.38 -51.93 -0.38 0.54 16 29 H 0.06 0.96 7.40 -51.93 -0.38 0.57 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 32 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 34 H 0.08 0.65 7.61 -51.93 -0.40 0.25 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.08 0.62 8.09 -51.93 -0.42 0.19 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -30.30 311.44 -9.44 -39.74 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.59 Total: -0.03 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -1.97 Total: -21.75 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.10 Total: -40.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.30 -9.44 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461428129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.571 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds