Wall clock time and date at job start Sun Mar 29 2020 21:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00604 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00404 * 3 2 1 6 6 H 1.48501 * 109.47273 * 150.00575 * 3 2 1 7 7 C 1.37878 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.52967 * 109.43109 * 275.23526 * 12 11 10 14 14 C 1.53145 * 109.43083 * 178.24033 * 13 12 11 15 15 C 1.52720 * 109.23867 * 57.82689 * 14 13 12 16 16 C 1.53422 * 113.50459 * 74.68543 * 15 14 13 17 17 C 1.53846 * 86.97083 * 89.40670 * 16 15 14 18 18 C 1.53395 * 113.55197 * 172.54757 * 15 14 13 19 19 C 1.52726 * 112.93762 * 303.67868 * 15 14 13 20 20 C 1.52970 * 109.43109 * 154.99980 * 12 11 10 21 21 H 0.96997 * 120.00332 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 23 23 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 24 24 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 25 25 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 26 26 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 27 27 H 1.09003 * 109.43244 * 35.09301 * 12 11 10 28 28 H 1.08997 * 109.47846 * 298.22639 * 13 12 11 29 29 H 1.08997 * 109.48264 * 58.25573 * 13 12 11 30 30 H 1.08999 * 109.51303 * 297.89600 * 14 13 12 31 31 H 1.09001 * 109.51080 * 177.75300 * 14 13 12 32 32 H 1.08999 * 113.63336 * 203.92171 * 16 15 14 33 33 H 1.08996 * 113.62874 * 334.88433 * 16 15 14 34 34 H 1.09005 * 113.60083 * 270.59229 * 17 16 15 35 35 H 1.08994 * 113.60629 * 139.71843 * 17 16 15 36 36 H 1.09000 * 113.63015 * 25.16127 * 18 15 14 37 37 H 1.09002 * 113.63252 * 156.11462 * 18 15 14 38 38 H 1.08999 * 109.50489 * 296.39707 * 19 15 14 39 39 H 1.08994 * 109.55434 * 176.27595 * 19 15 14 40 40 H 1.09000 * 109.48078 * 301.74892 * 20 12 11 41 41 H 1.09001 * 109.47719 * 61.76980 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 7 5.4904 -2.6366 -0.0022 12 6 6.0169 -4.0081 -0.0027 13 6 6.0775 -4.5304 1.4337 14 6 6.5848 -5.9754 1.4294 15 6 7.9569 -6.0250 0.7607 16 6 9.0865 -5.4729 1.6399 17 6 9.2489 -6.9018 2.1866 18 6 8.6394 -7.3950 0.8628 19 6 7.9505 -5.4504 -0.6544 20 6 7.4193 -4.0146 -0.6135 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8744 -0.6801 -0.8912 24 1 3.6577 -3.1506 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 5.8514 -2.1108 -0.7840 27 1 5.3611 -4.6480 -0.5932 28 1 6.7558 -3.9089 2.0182 29 1 5.0816 -4.4963 1.8753 30 1 5.8874 -6.6045 0.8763 31 1 6.6665 -6.3357 2.4549 32 1 9.9489 -5.1212 1.0737 33 1 8.7476 -4.7552 2.3870 34 1 8.6270 -7.1092 3.0574 35 1 10.2879 -7.2001 2.3265 36 1 7.9411 -8.2229 0.9850 37 1 9.3782 -7.5744 0.0817 38 1 7.3079 -6.0583 -1.2911 39 1 8.9648 -5.4520 -1.0534 40 1 7.3766 -3.6140 -1.6263 41 1 8.0829 -3.3986 -0.0066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461428129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:44 Heat of formation + Delta-G solvation = -29.156717 kcal Electronic energy + Delta-G solvation = -17132.558816 eV Core-core repulsion = 14624.643712 eV Total energy + Delta-G solvation = -2507.915104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26410 -38.22378 -35.68783 -34.20950 -31.83928 -31.52817 -28.28375 -26.52164 -25.56415 -24.04838 -22.93612 -22.07873 -21.11164 -18.96255 -18.87157 -16.95022 -16.35780 -16.29097 -16.22743 -15.68321 -15.19368 -14.70007 -14.66200 -14.31553 -14.25869 -13.49929 -13.33869 -13.23445 -13.10811 -12.91622 -12.59383 -12.25682 -12.00107 -11.97294 -11.85727 -11.70522 -11.67753 -11.43982 -11.33381 -10.86248 -10.80571 -10.78067 -10.60095 -9.31213 -8.31278 -6.36238 1.35841 1.38634 1.52006 2.36143 3.04162 3.21238 3.67566 3.70282 3.76911 4.01419 4.06756 4.13062 4.37045 4.41311 4.45739 4.46594 4.54916 4.62687 4.76699 4.82499 4.85867 4.93028 4.94864 4.96002 4.99840 5.12878 5.13994 5.18344 5.25306 5.29795 5.34986 5.36486 5.45313 5.51228 5.62320 5.65077 5.70095 6.18773 6.25548 6.57029 6.72795 7.28778 8.85572 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.053970 B = 0.004260 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.684145 B = 6571.266370 C = 6688.979085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.089 3.911 11 N -0.691 5.691 12 C 0.087 3.913 13 C -0.102 4.102 14 C -0.089 4.089 15 C -0.081 4.081 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.130 4.130 19 C -0.096 4.096 20 C -0.111 4.111 21 H 0.267 0.733 22 H 0.022 0.978 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.051 0.949 26 H 0.342 0.658 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.046 -12.758 0.936 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.575 4.575 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.040 4.040 11 N -0.323 5.323 12 C -0.023 4.023 13 C -0.140 4.140 14 C -0.127 4.127 15 C -0.081 4.081 16 C -0.169 4.169 17 C -0.176 4.176 18 C -0.167 4.167 19 C -0.134 4.134 20 C -0.149 4.149 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.943 -12.585 1.618 25.348 hybrid contribution -0.877 0.505 -0.875 1.338 sum 21.066 -12.080 0.743 24.296 Atomic orbital electron populations 1.70065 1.08333 1.28297 1.52455 1.26025 0.95653 1.03638 0.93873 0.85572 0.79390 0.77867 0.79277 1.18941 1.20839 1.17191 1.21414 0.91994 0.93183 1.50870 0.95225 1.19429 0.93505 0.94419 0.96743 1.21629 0.86705 0.97221 0.98433 1.60552 1.07188 1.14546 1.49984 1.21560 0.95789 0.88352 0.96566 1.21453 1.00229 0.96305 0.95993 1.21262 0.95293 0.95513 1.00646 1.21565 0.94243 0.97081 0.95183 1.22948 0.98170 0.96806 0.98987 1.22831 1.01287 0.96254 0.97271 1.22940 0.99692 0.95914 0.98147 1.21432 1.01438 0.94584 0.95914 1.21635 0.94717 0.98195 1.00335 0.92380 0.95950 0.96274 0.96966 0.93037 0.83981 0.95459 0.91734 0.94075 0.92306 0.91137 0.89593 0.92355 0.90479 0.90837 0.91628 0.89288 0.92304 0.90279 0.91837 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 2 C 0.00 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.96 45.37 27.47 68.60 1.88 47.25 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.54 -32.05 9.66 25.60 0.25 -31.80 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C 0.00 -0.15 4.30 29.85 0.13 -0.03 16 10 C 0.09 3.74 5.42 86.30 0.47 4.21 16 11 N -0.69 -23.25 6.31 -491.65 -3.10 -26.35 16 12 C 0.09 2.41 2.44 44.89 0.11 2.52 16 13 C -0.10 -2.70 5.35 30.63 0.16 -2.54 16 14 C -0.09 -1.86 5.03 30.55 0.15 -1.71 16 15 C -0.08 -1.40 0.76 -52.09 -0.04 -1.44 16 16 C -0.13 -2.14 6.82 31.02 0.21 -1.92 16 17 C -0.14 -1.96 7.73 31.17 0.24 -1.72 16 18 C -0.13 -1.86 7.23 31.01 0.22 -1.64 16 19 C -0.10 -1.69 5.09 30.55 0.16 -1.53 16 20 C -0.11 -2.38 5.13 30.63 0.16 -2.22 16 21 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 22 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 23 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 24 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 25 H 0.05 2.26 7.39 -2.39 -0.02 2.24 16 26 H 0.34 10.60 8.32 -89.69 -0.75 9.85 16 27 H 0.03 0.82 7.80 -2.39 -0.02 0.80 16 28 H 0.06 1.74 7.38 -2.39 -0.02 1.72 16 29 H 0.04 1.26 7.40 -2.39 -0.02 1.24 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.37 7.31 -2.39 -0.02 1.35 16 32 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 33 H 0.06 1.07 7.36 -2.39 -0.02 1.05 16 34 H 0.08 1.11 7.61 -2.38 -0.02 1.09 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 37 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 40 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 41 H 0.07 1.52 7.97 -2.39 -0.02 1.51 16 Total: -1.00 -65.54 311.44 1.94 -63.61 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.17 Total: 15.09 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.68 Total: -39.06 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.80 Total: -86.89 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -65.54 1.94 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461428129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -65.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds