Wall clock time and date at job start Sun Mar 29 2020 21:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46731 * 2 1 4 4 C 1.46898 * 111.00395 * 297.99103 * 3 2 1 5 5 C 1.50709 * 109.47053 * 292.92952 * 4 3 2 6 6 H 1.07997 * 119.99800 * 354.96024 * 5 4 3 7 7 C 1.37871 * 119.99932 * 174.96213 * 5 4 3 8 8 N 1.31507 * 120.00306 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47639 * 119.99816 * 9 7 5 12 12 H 1.48505 * 109.47126 * 240.00113 * 9 7 5 13 13 C 1.46896 * 111.00045 * 61.94740 * 3 2 1 14 14 C 1.50704 * 109.47499 * 66.04127 * 13 3 2 15 15 C 1.39874 * 125.89588 * 95.23424 * 14 13 3 16 16 C 1.35315 * 107.91527 * 180.14481 * 15 14 13 17 17 N 1.34943 * 107.74747 * 359.64411 * 16 15 14 18 18 C 1.46506 * 126.03548 * 180.25098 * 17 16 15 19 19 C 1.52993 * 109.47228 * 124.99859 * 18 17 16 20 20 N 1.30834 * 125.89792 * 274.97982 * 14 13 3 21 21 H 1.08996 * 109.47545 * 299.65928 * 1 2 3 22 22 H 1.09003 * 109.47249 * 59.66398 * 1 2 3 23 23 H 1.09006 * 109.46886 * 179.65467 * 1 2 3 24 24 H 1.08999 * 109.47022 * 240.00323 * 2 1 3 25 25 H 1.09002 * 109.47124 * 119.99736 * 2 1 3 26 26 H 1.09003 * 109.47074 * 52.92391 * 4 3 2 27 27 H 1.08991 * 109.47719 * 172.92564 * 4 3 2 28 28 H 0.97002 * 120.00624 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.47343 * 306.04435 * 13 3 2 30 30 H 1.09000 * 109.47554 * 186.04796 * 13 3 2 31 31 H 1.07996 * 126.03767 * 0.02562 * 15 14 13 32 32 H 1.08004 * 126.12022 * 179.90350 * 16 15 14 33 33 H 1.09006 * 109.46743 * 244.99800 * 18 17 16 34 34 H 1.08994 * 109.47134 * 4.99446 * 18 17 16 35 35 H 1.09003 * 109.47438 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.47210 * 299.99655 * 19 18 17 37 37 H 1.09003 * 109.47247 * 59.99645 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5882 2.0960 -1.2109 5 6 2.2702 1.4978 -2.4145 6 1 3.0159 0.7274 -2.2851 7 6 1.9420 1.9340 -3.6805 8 7 1.0343 2.8725 -3.8379 9 14 2.7878 1.1931 -5.1722 10 1 3.7632 0.1649 -4.7283 11 1 1.7729 0.5646 -6.0554 12 1 3.5003 2.2611 -5.9186 13 6 1.5870 2.0963 1.2103 14 6 2.2482 1.4823 2.4173 15 6 3.4256 1.9311 3.0246 16 6 3.6906 1.1161 4.0718 17 7 2.7113 0.1895 4.1300 18 6 2.6018 -0.8880 5.1166 19 6 1.2370 -0.8135 5.8039 20 7 1.8175 0.4403 3.0809 21 1 -0.3634 0.5085 0.8930 22 1 -0.3634 0.5191 -0.8870 23 1 -0.3633 -1.0277 -0.0062 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5079 2.0025 -1.3217 27 1 1.8552 3.1495 -1.1284 28 1 0.8031 3.1792 -4.7287 29 1 0.5043 2.0184 1.3101 30 1 1.8702 3.1463 1.1356 31 1 4.0193 2.7772 2.7117 32 1 4.5326 1.1959 4.7434 33 1 2.7045 -1.8508 4.6160 34 1 3.3901 -0.7800 5.8616 35 1 1.1553 -1.6155 6.5376 36 1 1.1343 0.1493 6.3046 37 1 0.4486 -0.9215 5.0589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462044332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:31 Heat of formation + Delta-G solvation = 81.158949 kcal Electronic energy + Delta-G solvation = -16933.908559 eV Core-core repulsion = 14327.236757 eV Total energy + Delta-G solvation = -2606.671801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89699 -37.10851 -34.37322 -32.53084 -30.57539 -29.63112 -28.92323 -27.31257 -24.95563 -23.22204 -22.68985 -20.84231 -19.95231 -18.66562 -16.80242 -16.09007 -15.43465 -14.92047 -14.78177 -14.27207 -14.09224 -13.69171 -13.29978 -12.78337 -12.67310 -12.26639 -12.22836 -11.90359 -11.61623 -11.42757 -11.32103 -11.07691 -10.79390 -10.60706 -10.49329 -10.13576 -9.92832 -9.67745 -9.15304 -8.92096 -8.36383 -8.24704 -7.05861 -5.95659 -3.95838 2.15855 2.69844 3.15894 3.35581 3.42902 3.48616 4.46918 4.50134 4.83020 4.94217 5.03193 5.14533 5.35455 5.39984 5.40461 5.57276 5.68878 5.93305 6.00620 6.05652 6.15186 6.19212 6.26583 6.35517 6.45929 6.69424 6.82531 6.98769 7.10680 7.27296 7.40064 7.54332 7.90139 8.07277 8.18991 8.31783 8.64794 9.12842 9.67898 11.15076 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.005200 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.779515 B = 5383.430717 C = 5507.336906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 N -0.529 5.529 4 C 0.188 3.812 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.126 3.874 14 C 0.099 3.901 15 C -0.253 4.253 16 C 0.040 3.960 17 N -0.383 5.383 18 C 0.134 3.866 19 C -0.164 4.164 20 N -0.290 5.290 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.005 0.995 27 H 0.026 0.974 28 H 0.259 0.741 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -5.162 17.732 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.066 4.066 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.004 4.004 14 C -0.068 4.068 15 C -0.283 4.283 16 C -0.105 4.105 17 N -0.166 5.166 18 C 0.013 3.987 19 C -0.222 4.222 20 N -0.113 5.113 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.075 -6.076 17.802 18.925 hybrid contribution 0.272 0.290 -0.861 0.948 sum 2.347 -5.786 16.942 18.056 Atomic orbital electron populations 1.22325 0.99444 1.00769 1.01711 1.21941 0.92135 0.91211 1.01266 1.62310 1.59285 1.02116 1.01593 1.19808 0.94860 0.93698 0.85302 1.21190 1.21630 1.21079 0.90016 0.91912 1.24962 0.95352 0.95318 0.98979 1.69964 1.32205 1.29345 1.22487 0.86483 0.79383 0.79072 0.82735 1.19707 1.21207 1.21086 1.20465 0.96323 0.97229 0.86404 1.22406 0.94912 0.93284 0.96219 1.21402 1.01164 1.05720 1.00020 1.22413 0.95116 0.92144 1.00858 1.48667 1.19304 1.24454 1.24149 1.21548 0.99353 0.88832 0.88996 1.22043 0.96886 1.02319 1.00948 1.77315 1.15222 1.18682 1.00089 0.93492 0.91604 0.93748 0.90600 0.92502 0.97756 0.95601 0.93093 0.93962 0.89718 0.83745 0.81614 0.90195 0.89189 0.91114 0.92274 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.06 1.35 5.69 -3.82 -0.02 1.33 16 3 N -0.53 -12.00 4.68 -237.51 -1.11 -13.11 16 4 C 0.19 4.95 4.53 -4.97 -0.02 4.93 16 5 C -0.50 -14.26 8.40 -34.44 -0.29 -14.55 16 6 H 0.06 1.80 7.38 -52.49 -0.39 1.41 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.13 2.46 5.31 -4.98 -0.03 2.44 16 14 C 0.10 1.78 5.97 -82.40 -0.49 1.29 16 15 C -0.25 -3.94 10.74 -40.01 -0.43 -4.37 16 16 C 0.04 0.51 11.45 -17.23 -0.20 0.32 16 17 N -0.38 -5.28 3.68 -61.37 -0.23 -5.51 16 18 C 0.13 1.25 7.23 -4.04 -0.03 1.23 16 19 C -0.16 -1.44 10.10 37.15 0.38 -1.06 16 20 N -0.29 -5.05 11.33 33.67 0.38 -4.67 16 21 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 22 H 0.07 1.46 6.28 -51.93 -0.33 1.13 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.75 6.98 -51.93 -0.36 1.38 16 25 H 0.06 1.18 6.42 -51.93 -0.33 0.85 16 26 H 0.00 0.13 6.01 -51.93 -0.31 -0.18 16 27 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.04 0.83 6.07 -51.93 -0.32 0.52 16 30 H 0.08 1.58 7.92 -51.93 -0.41 1.17 16 31 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -32.15 302.49 -7.27 -39.42 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.70 Total: -1.16 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.89 Total: -10.32 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.22 Total: -49.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.15 -7.27 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462044332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.579 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds