Wall clock time and date at job start Sun Mar 29 2020 21:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46731 * 2 1 4 4 C 1.46898 * 111.00395 * 297.99103 * 3 2 1 5 5 C 1.50709 * 109.47053 * 292.92952 * 4 3 2 6 6 H 1.07997 * 119.99800 * 354.96024 * 5 4 3 7 7 C 1.37871 * 119.99932 * 174.96213 * 5 4 3 8 8 N 1.31507 * 120.00306 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47639 * 119.99816 * 9 7 5 12 12 H 1.48505 * 109.47126 * 240.00113 * 9 7 5 13 13 C 1.46896 * 111.00045 * 61.94740 * 3 2 1 14 14 C 1.50704 * 109.47499 * 66.04127 * 13 3 2 15 15 C 1.39874 * 125.89588 * 95.23424 * 14 13 3 16 16 C 1.35315 * 107.91527 * 180.14481 * 15 14 13 17 17 N 1.34943 * 107.74747 * 359.64411 * 16 15 14 18 18 C 1.46506 * 126.03548 * 180.25098 * 17 16 15 19 19 C 1.52993 * 109.47228 * 124.99859 * 18 17 16 20 20 N 1.30834 * 125.89792 * 274.97982 * 14 13 3 21 21 H 1.08996 * 109.47545 * 299.65928 * 1 2 3 22 22 H 1.09003 * 109.47249 * 59.66398 * 1 2 3 23 23 H 1.09006 * 109.46886 * 179.65467 * 1 2 3 24 24 H 1.08999 * 109.47022 * 240.00323 * 2 1 3 25 25 H 1.09002 * 109.47124 * 119.99736 * 2 1 3 26 26 H 1.09003 * 109.47074 * 52.92391 * 4 3 2 27 27 H 1.08991 * 109.47719 * 172.92564 * 4 3 2 28 28 H 0.97002 * 120.00624 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.47343 * 306.04435 * 13 3 2 30 30 H 1.09000 * 109.47554 * 186.04796 * 13 3 2 31 31 H 1.07996 * 126.03767 * 0.02562 * 15 14 13 32 32 H 1.08004 * 126.12022 * 179.90350 * 16 15 14 33 33 H 1.09006 * 109.46743 * 244.99800 * 18 17 16 34 34 H 1.08994 * 109.47134 * 4.99446 * 18 17 16 35 35 H 1.09003 * 109.47438 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.47210 * 299.99655 * 19 18 17 37 37 H 1.09003 * 109.47247 * 59.99645 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5882 2.0960 -1.2109 5 6 2.2702 1.4978 -2.4145 6 1 3.0159 0.7274 -2.2851 7 6 1.9420 1.9340 -3.6805 8 7 1.0343 2.8725 -3.8379 9 14 2.7878 1.1931 -5.1722 10 1 3.7632 0.1649 -4.7283 11 1 1.7729 0.5646 -6.0554 12 1 3.5003 2.2611 -5.9186 13 6 1.5870 2.0963 1.2103 14 6 2.2482 1.4823 2.4173 15 6 3.4256 1.9311 3.0246 16 6 3.6906 1.1161 4.0718 17 7 2.7113 0.1895 4.1300 18 6 2.6018 -0.8880 5.1166 19 6 1.2370 -0.8135 5.8039 20 7 1.8175 0.4403 3.0809 21 1 -0.3634 0.5085 0.8930 22 1 -0.3634 0.5191 -0.8870 23 1 -0.3633 -1.0277 -0.0062 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5079 2.0025 -1.3217 27 1 1.8552 3.1495 -1.1284 28 1 0.8031 3.1792 -4.7287 29 1 0.5043 2.0184 1.3101 30 1 1.8702 3.1463 1.1356 31 1 4.0193 2.7772 2.7117 32 1 4.5326 1.1959 4.7434 33 1 2.7045 -1.8508 4.6160 34 1 3.3901 -0.7800 5.8616 35 1 1.1553 -1.6155 6.5376 36 1 1.1343 0.1493 6.3046 37 1 0.4486 -0.9215 5.0589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462044332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:31 Heat of formation + Delta-G solvation = 59.691472 kcal Electronic energy + Delta-G solvation = -16934.839458 eV Core-core repulsion = 14327.236757 eV Total energy + Delta-G solvation = -2607.602701 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04351 -38.86209 -35.39730 -34.62401 -31.81372 -31.15385 -30.33598 -28.97879 -26.62392 -25.00380 -23.88804 -21.94693 -21.52553 -20.08278 -18.34737 -17.76801 -16.90349 -16.69841 -16.17042 -15.90728 -15.17494 -15.08025 -14.71047 -14.29584 -14.10314 -13.75643 -13.33526 -13.15460 -13.11690 -12.92208 -12.79212 -12.59502 -12.53024 -12.41686 -12.17910 -11.88816 -11.52127 -11.40470 -11.21738 -10.57822 -10.12601 -9.37645 -8.91349 -8.16107 -6.25194 1.04786 1.41998 1.42512 1.56175 1.73879 1.90471 2.43775 3.16275 3.48216 3.67380 3.96342 4.10247 4.17439 4.25011 4.31696 4.41634 4.47467 4.57256 4.68230 4.75315 4.85885 4.95729 4.96700 5.00366 5.05174 5.19355 5.23991 5.29341 5.36731 5.49185 5.69327 5.77984 6.10299 6.31837 6.37243 6.65408 6.88656 6.91269 7.43749 8.94661 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.005200 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.779515 B = 5383.430717 C = 5507.336906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 N -0.535 5.535 4 C 0.204 3.796 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.130 3.870 14 C 0.074 3.926 15 C -0.283 4.283 16 C 0.063 3.937 17 N -0.378 5.378 18 C 0.123 3.877 19 C -0.159 4.159 20 N -0.320 5.320 21 H 0.052 0.948 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.067 0.933 26 H -0.017 1.017 27 H 0.004 0.996 28 H 0.264 0.736 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.217 0.783 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -6.565 19.365 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.058 4.058 3 N -0.259 5.259 4 C 0.078 3.922 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.001 3.999 14 C -0.092 4.092 15 C -0.312 4.312 16 C -0.084 4.084 17 N -0.161 5.161 18 C 0.003 3.997 19 C -0.217 4.217 20 N -0.145 5.145 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.000 1.000 27 H 0.022 0.978 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.566 -7.494 19.456 21.153 hybrid contribution -0.191 0.686 -1.210 1.404 sum 3.375 -6.808 18.246 19.765 Atomic orbital electron populations 1.22173 0.98357 1.01871 1.00532 1.21842 0.92954 0.90356 1.00652 1.62205 1.59604 1.02635 1.01490 1.19461 0.93264 0.92732 0.86745 1.21428 1.21792 1.21165 0.91211 0.92508 1.25828 0.95888 0.95582 1.02043 1.70081 1.33391 1.30467 1.23460 0.85387 0.78405 0.78412 0.78722 1.19066 1.20440 1.20273 1.20360 0.96203 0.97225 0.86142 1.22126 0.96302 0.94506 0.96257 1.21616 1.00960 1.07182 1.01476 1.23083 0.95268 0.90093 0.99915 1.49071 1.18480 1.25051 1.23498 1.22025 1.01010 0.87697 0.88919 1.22001 0.95723 1.03244 1.00696 1.77195 1.16906 1.18783 1.01578 0.92928 0.94374 0.91432 0.92549 0.91454 0.99965 0.97807 0.92744 0.94596 0.89748 0.83249 0.76662 0.89821 0.84937 0.88133 0.92711 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.07 3.07 5.69 86.30 0.49 3.56 16 3 N -0.54 -25.09 4.68 -905.34 -4.24 -29.33 16 4 C 0.20 11.22 4.53 85.56 0.39 11.60 16 5 C -0.52 -30.25 8.40 25.60 0.21 -30.03 16 6 H 0.06 3.32 7.38 -2.91 -0.02 3.30 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -56.89 13.29 21.44 0.28 -56.60 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.13 5.28 5.31 85.56 0.45 5.74 16 14 C 0.07 2.65 5.97 43.10 0.26 2.90 16 15 C -0.28 -8.46 10.74 21.99 0.24 -8.23 16 16 C 0.06 1.41 11.45 83.54 0.96 2.37 16 17 N -0.38 -9.44 3.68 -348.06 -1.28 -10.72 16 18 C 0.12 1.86 7.23 86.38 0.62 2.48 16 19 C -0.16 -2.39 10.10 71.98 0.73 -1.66 16 20 N -0.32 -10.90 11.33 -47.38 -0.54 -11.44 16 21 H 0.05 2.05 6.34 -2.39 -0.02 2.04 16 22 H 0.04 1.75 6.28 -2.39 -0.01 1.73 16 23 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.06 2.65 6.98 -2.39 -0.02 2.64 16 25 H 0.07 2.81 6.42 -2.39 -0.02 2.79 16 26 H -0.02 -1.02 6.01 -2.39 -0.01 -1.03 16 27 H 0.00 0.22 7.91 -2.39 -0.02 0.21 16 28 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.04 1.48 6.07 -2.38 -0.01 1.46 16 30 H 0.08 3.32 7.92 -2.39 -0.02 3.30 16 31 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.13 0.93 8.07 -2.39 -0.02 0.91 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.18 302.49 2.77 -68.42 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.04 Total: 9.12 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.48 Total: -16.82 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -5.77 Total: -108.09 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.18 2.77 -68.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462044332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.109 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds