Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 C 1.50699 * 109.47106 * 120.00515 * 2 1 3 5 5 H 1.08005 * 119.99965 * 117.49889 * 4 2 1 6 6 C 1.37873 * 120.00080 * 297.49738 * 4 2 1 7 7 N 1.31513 * 119.99825 * 6.28718 * 6 4 2 8 8 Si 1.86797 * 120.00223 * 186.28766 * 6 4 2 9 9 H 1.48502 * 109.47038 * 85.34871 * 8 6 4 10 10 H 1.48499 * 109.47021 * 325.34907 * 8 6 4 11 11 H 1.48499 * 109.47109 * 205.35010 * 8 6 4 12 12 C 1.53007 * 109.46696 * 240.00501 * 2 1 3 13 13 N 1.46900 * 109.47210 * 60.00064 * 12 2 1 14 14 C 1.46901 * 110.99785 * 180.02562 * 13 12 2 15 15 H 1.09002 * 112.78013 * 333.58785 * 14 13 12 16 16 C 1.53633 * 113.52374 * 104.50104 * 14 13 12 17 17 C 1.53518 * 87.58727 * 138.84230 * 16 14 13 18 18 H 1.09005 * 115.95965 * 216.55842 * 17 16 14 19 19 C 1.54690 * 113.40710 * 80.27575 * 17 16 14 20 20 C 1.54871 * 102.82403 * 228.75332 * 19 17 16 21 21 C 1.54244 * 104.20903 * 38.04442 * 20 19 17 22 22 C 1.53815 * 113.52394 * 202.57941 * 14 13 12 23 23 H 1.09004 * 115.62632 * 338.98324 * 22 14 13 24 24 H 1.09003 * 109.46621 * 299.99890 * 1 2 3 25 25 H 1.09000 * 109.47387 * 59.99349 * 1 2 3 26 26 H 1.08991 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46489 * 184.22819 * 3 2 1 28 28 H 1.08992 * 109.47480 * 304.22768 * 3 2 1 29 29 H 1.08993 * 109.46657 * 64.23304 * 3 2 1 30 30 H 0.97006 * 120.00241 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46802 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47069 * 299.99930 * 12 2 1 33 33 H 1.00894 * 110.99963 * 56.04855 * 13 12 2 34 34 H 1.08999 * 113.53570 * 253.52107 * 16 14 13 35 35 H 1.09005 * 113.53000 * 24.09866 * 16 14 13 36 36 H 1.09004 * 110.73769 * 347.08426 * 19 17 16 37 37 H 1.08995 * 110.74268 * 110.23268 * 19 17 16 38 38 H 1.09004 * 110.48532 * 156.72604 * 20 19 17 39 39 H 1.09006 * 110.48373 * 279.23292 * 20 19 17 40 40 H 1.08998 * 110.01966 * 95.66451 * 21 20 19 41 41 H 1.08996 * 110.02029 * 217.02022 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6196 -1.6116 1.1317 6 6 1.7424 -0.2103 2.4820 7 7 0.9266 0.8135 2.6081 8 14 2.5083 -0.9866 3.9986 9 1 3.8483 -0.3922 4.2358 10 1 2.6460 -2.4503 3.7895 11 1 1.6394 -0.7344 5.1762 12 6 2.0400 -0.7212 -1.2494 13 7 1.5503 -0.0286 -2.4488 14 6 2.0207 -0.6950 -3.6704 15 1 2.9530 -1.2398 -3.5217 16 6 0.9339 -1.5206 -4.3759 17 6 1.4760 -0.9775 -5.7056 18 1 0.7319 -0.7677 -6.4741 19 6 2.7384 -1.7199 -6.2037 20 6 3.7054 -0.5603 -6.5484 21 6 3.4523 0.4851 -5.4429 22 6 2.0346 0.2233 -4.9043 23 1 1.3912 1.1013 -4.8458 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1274 1.4433 -0.0758 28 1 1.6162 1.9778 -0.8496 29 1 1.7399 1.9339 0.9255 30 1 0.7222 1.1653 3.4888 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7489 -1.2494 33 1 1.8198 0.9437 -2.4402 34 1 1.0617 -2.5969 -4.2610 35 1 -0.0796 -1.1891 -4.1500 36 1 3.1537 -2.3472 -5.4149 37 1 2.5127 -2.3142 -7.0890 38 1 4.7394 -0.9042 -6.5187 39 1 3.4701 -0.1462 -7.5289 40 1 4.1832 0.3667 -4.6430 41 1 3.5144 1.4906 -5.8590 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462325727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = 1.105403 kcal Electronic energy + Delta-G solvation = -17588.176730 eV Core-core repulsion = 15081.573890 eV Total energy + Delta-G solvation = -2506.602840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29284 -36.51358 -33.72945 -31.88815 -30.18675 -28.53056 -25.52843 -25.18501 -24.51545 -23.95902 -21.89452 -20.58241 -18.51385 -18.03060 -16.40141 -15.57200 -15.11665 -14.67875 -14.42379 -13.88539 -13.70926 -13.22875 -12.74227 -12.67809 -12.04328 -11.95508 -11.65752 -11.18850 -11.10379 -11.03042 -10.94694 -10.66475 -10.62192 -10.54028 -10.45433 -10.20579 -10.04374 -9.98478 -9.82310 -9.34477 -8.93532 -8.59800 -8.24342 -7.61559 -5.88405 -3.98118 3.33394 3.39973 3.42726 4.38336 4.46055 4.57664 4.64862 5.04681 5.13109 5.25431 5.31235 5.36479 5.49453 5.54562 5.60926 5.73069 5.81322 5.90174 5.97403 6.05159 6.11464 6.26244 6.33472 6.38329 6.42282 6.62746 6.67845 6.77762 6.92741 7.12933 7.21030 7.43828 7.53977 7.79167 7.81483 7.90814 8.06237 8.24961 8.40179 8.60433 9.03193 9.66326 11.11866 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044919 B = 0.005168 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.197006 B = 5416.137426 C = 5477.051208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.288 1.288 12 C 0.076 3.924 13 N -0.675 5.675 14 C 0.070 3.930 15 H 0.062 0.938 16 C -0.118 4.118 17 C -0.117 4.117 18 H 0.083 0.917 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.013 0.987 29 H 0.081 0.919 30 H 0.258 0.742 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.337 0.663 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -1.382 -15.501 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.214 1.214 12 C -0.052 4.052 13 N -0.306 5.306 14 C -0.041 4.041 15 H 0.080 0.920 16 C -0.156 4.156 17 C -0.136 4.136 18 H 0.101 0.899 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.134 4.134 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.138 -1.588 -15.332 15.562 hybrid contribution 1.432 -0.187 0.921 1.713 sum 3.570 -1.775 -14.411 14.953 Atomic orbital electron populations 1.21653 0.97384 0.98532 1.00020 1.18099 0.93244 0.91871 0.90062 1.21808 0.97157 0.99150 1.00907 1.21110 1.32790 1.10017 0.90563 0.93076 1.24880 0.94877 0.95195 0.98609 1.69850 1.34423 1.25083 1.22894 0.86695 0.79223 0.79659 0.82883 1.20811 1.20142 1.21366 1.22175 0.95214 0.97805 0.90051 1.60723 1.62840 1.06077 1.01002 1.23017 0.96213 0.95687 0.89148 0.92007 1.22887 0.99849 0.98927 0.93978 1.23147 0.97018 0.97003 0.96386 0.89874 1.22349 0.94811 0.97086 1.00596 1.22362 0.99041 0.95905 0.98518 1.22124 0.96802 0.98733 0.98036 1.23575 0.96029 0.97447 0.96384 0.88321 0.90645 0.96234 0.96393 0.96403 0.96840 0.90006 0.93218 0.97110 0.92745 0.84360 0.92312 0.89447 0.91315 0.91867 0.91999 0.91878 0.91871 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.12 37.16 0.30 -2.64 16 2 C 0.07 1.67 0.57 -155.65 -0.09 1.58 16 3 C -0.13 -3.17 7.83 37.16 0.29 -2.88 16 4 C -0.51 -13.83 8.01 -34.44 -0.28 -14.11 16 5 H 0.05 1.40 7.75 -52.48 -0.41 0.99 16 6 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 7 N -0.88 -24.72 9.38 55.43 0.52 -24.21 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.08 1.63 4.45 -3.82 -0.02 1.61 16 13 N -0.67 -12.30 5.75 -105.92 -0.61 -12.91 16 14 C 0.07 1.06 3.15 -66.96 -0.21 0.85 16 15 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 16 C -0.12 -1.64 7.35 -26.13 -0.19 -1.83 16 17 C -0.12 -1.36 4.96 -88.52 -0.44 -1.80 16 18 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.11 -1.17 6.28 -24.86 -0.16 -1.32 16 20 C -0.12 -1.20 6.83 -25.09 -0.17 -1.37 16 21 C -0.12 -1.35 6.39 -25.61 -0.16 -1.52 16 22 C -0.12 -1.47 4.50 -88.77 -0.40 -1.87 16 23 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.07 2.05 6.04 -51.93 -0.31 1.74 16 25 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.01 0.28 6.79 -51.93 -0.35 -0.07 16 29 H 0.08 2.17 6.01 -51.93 -0.31 1.86 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.34 6.10 6.71 -39.29 -0.26 5.83 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.77 7.30 -51.93 -0.38 0.39 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -27.12 308.82 -9.48 -36.60 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.41 Total: 3.17 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -1.61 Total: -23.60 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.09 Total: -37.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.12 -9.48 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462325727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.710 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds