Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 C 1.50699 * 109.47106 * 120.00515 * 2 1 3 5 5 H 1.08005 * 119.99965 * 117.49889 * 4 2 1 6 6 C 1.37873 * 120.00080 * 297.49738 * 4 2 1 7 7 N 1.31513 * 119.99825 * 6.28718 * 6 4 2 8 8 Si 1.86797 * 120.00223 * 186.28766 * 6 4 2 9 9 H 1.48502 * 109.47038 * 85.34871 * 8 6 4 10 10 H 1.48499 * 109.47021 * 325.34907 * 8 6 4 11 11 H 1.48499 * 109.47109 * 205.35010 * 8 6 4 12 12 C 1.53007 * 109.46696 * 240.00501 * 2 1 3 13 13 N 1.46900 * 109.47210 * 60.00064 * 12 2 1 14 14 C 1.46901 * 110.99785 * 180.02562 * 13 12 2 15 15 H 1.09002 * 112.78013 * 333.58785 * 14 13 12 16 16 C 1.53633 * 113.52374 * 104.50104 * 14 13 12 17 17 C 1.53518 * 87.58727 * 138.84230 * 16 14 13 18 18 H 1.09005 * 115.95965 * 216.55842 * 17 16 14 19 19 C 1.54690 * 113.40710 * 80.27575 * 17 16 14 20 20 C 1.54871 * 102.82403 * 228.75332 * 19 17 16 21 21 C 1.54244 * 104.20903 * 38.04442 * 20 19 17 22 22 C 1.53815 * 113.52394 * 202.57941 * 14 13 12 23 23 H 1.09004 * 115.62632 * 338.98324 * 22 14 13 24 24 H 1.09003 * 109.46621 * 299.99890 * 1 2 3 25 25 H 1.09000 * 109.47387 * 59.99349 * 1 2 3 26 26 H 1.08991 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46489 * 184.22819 * 3 2 1 28 28 H 1.08992 * 109.47480 * 304.22768 * 3 2 1 29 29 H 1.08993 * 109.46657 * 64.23304 * 3 2 1 30 30 H 0.97006 * 120.00241 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46802 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47069 * 299.99930 * 12 2 1 33 33 H 1.00894 * 110.99963 * 56.04855 * 13 12 2 34 34 H 1.08999 * 113.53570 * 253.52107 * 16 14 13 35 35 H 1.09005 * 113.53000 * 24.09866 * 16 14 13 36 36 H 1.09004 * 110.73769 * 347.08426 * 19 17 16 37 37 H 1.08995 * 110.74268 * 110.23268 * 19 17 16 38 38 H 1.09004 * 110.48532 * 156.72604 * 20 19 17 39 39 H 1.09006 * 110.48373 * 279.23292 * 20 19 17 40 40 H 1.08998 * 110.01966 * 95.66451 * 21 20 19 41 41 H 1.08996 * 110.02029 * 217.02022 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6196 -1.6116 1.1317 6 6 1.7424 -0.2103 2.4820 7 7 0.9266 0.8135 2.6081 8 14 2.5083 -0.9866 3.9986 9 1 3.8483 -0.3922 4.2358 10 1 2.6460 -2.4503 3.7895 11 1 1.6394 -0.7344 5.1762 12 6 2.0400 -0.7212 -1.2494 13 7 1.5503 -0.0286 -2.4488 14 6 2.0207 -0.6950 -3.6704 15 1 2.9530 -1.2398 -3.5217 16 6 0.9339 -1.5206 -4.3759 17 6 1.4760 -0.9775 -5.7056 18 1 0.7319 -0.7677 -6.4741 19 6 2.7384 -1.7199 -6.2037 20 6 3.7054 -0.5603 -6.5484 21 6 3.4523 0.4851 -5.4429 22 6 2.0346 0.2233 -4.9043 23 1 1.3912 1.1013 -4.8458 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1274 1.4433 -0.0758 28 1 1.6162 1.9778 -0.8496 29 1 1.7399 1.9339 0.9255 30 1 0.7222 1.1653 3.4888 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7489 -1.2494 33 1 1.8198 0.9437 -2.4402 34 1 1.0617 -2.5969 -4.2610 35 1 -0.0796 -1.1891 -4.1500 36 1 3.1537 -2.3472 -5.4149 37 1 2.5127 -2.3142 -7.0890 38 1 4.7394 -0.9042 -6.5187 39 1 3.4701 -0.1462 -7.5289 40 1 4.1832 0.3667 -4.6430 41 1 3.5144 1.4906 -5.8590 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462325727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = -12.605178 kcal Electronic energy + Delta-G solvation = -17588.771266 eV Core-core repulsion = 15081.573890 eV Total energy + Delta-G solvation = -2507.197376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33675 -38.31211 -35.21863 -33.40928 -31.76517 -29.53387 -27.51087 -27.25616 -25.94185 -25.21267 -23.14840 -21.47440 -20.31429 -19.20930 -17.98866 -17.27377 -16.58510 -16.13046 -15.69754 -15.15938 -15.07569 -14.64791 -14.39261 -14.00210 -13.81814 -13.33222 -13.10927 -12.95802 -12.64106 -12.59309 -12.43424 -12.17377 -12.10623 -11.98906 -11.83164 -11.56892 -11.41081 -11.35240 -11.23602 -10.91782 -10.66411 -10.59262 -10.32970 -9.12163 -7.97255 -6.13794 1.42000 1.43582 1.51771 2.46261 3.24036 3.41963 3.48453 3.62794 3.85463 4.02093 4.37509 4.41153 4.41891 4.55328 4.61028 4.64539 4.71512 4.78260 4.86711 4.92133 4.98158 5.01529 5.09825 5.15522 5.17884 5.19125 5.24020 5.28351 5.43169 5.46890 5.51775 5.56897 5.65868 5.69777 5.75874 6.19451 6.29559 6.38051 6.51381 6.67999 6.95347 7.53341 9.00767 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044919 B = 0.005168 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.197006 B = 5416.137426 C = 5477.051208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.059 3.941 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.284 1.284 12 C 0.093 3.907 13 N -0.675 5.675 14 C 0.060 3.940 15 H 0.055 0.945 16 C -0.121 4.121 17 C -0.104 4.104 18 H 0.099 0.901 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.007 0.993 27 H 0.017 0.983 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.258 0.742 31 H 0.004 0.996 32 H 0.042 0.958 33 H 0.338 0.662 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -1.466 -17.117 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.058 3.942 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.210 1.210 12 C -0.036 4.036 13 N -0.307 5.307 14 C -0.050 4.050 15 H 0.073 0.927 16 C -0.159 4.159 17 C -0.122 4.122 18 H 0.117 0.883 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.130 4.130 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.665 -1.675 -16.963 17.252 hybrid contribution 1.246 -0.165 1.413 1.891 sum 3.911 -1.840 -15.550 16.140 Atomic orbital electron populations 1.21479 0.97703 0.97613 0.99373 1.18158 0.92953 0.92381 0.90712 1.21638 0.97159 0.98686 1.00378 1.21414 1.33065 1.10135 0.92077 0.93965 1.25529 0.95250 0.95739 1.01073 1.69976 1.34940 1.25818 1.23345 0.85792 0.78501 0.78855 0.79764 1.20337 1.19948 1.21010 1.21813 0.94545 0.96979 0.90293 1.60678 1.62916 1.06069 1.01000 1.23165 0.96385 0.96821 0.88659 0.92733 1.22873 0.98844 0.98710 0.95460 1.23131 0.97573 0.95942 0.95589 0.88276 1.22366 0.94193 0.97310 1.00951 1.22357 0.99324 0.95064 0.98604 1.22131 0.95367 1.00001 0.98222 1.23536 0.97192 0.97423 0.94876 0.88409 0.93111 0.94821 0.97353 0.96372 0.94680 0.92674 0.93274 0.97759 0.93954 0.84278 0.92417 0.90487 0.92441 0.90085 0.91296 0.90331 0.93094 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.20 8.12 71.98 0.58 -4.62 16 2 C 0.06 2.89 0.57 -52.92 -0.03 2.86 16 3 C -0.12 -5.77 7.83 71.98 0.56 -5.20 16 4 C -0.53 -29.16 8.01 25.60 0.20 -28.96 16 5 H 0.04 2.34 7.75 -2.91 -0.02 2.32 16 6 C 0.02 1.28 5.11 84.65 0.43 1.71 16 7 N -0.90 -50.93 9.38 21.45 0.20 -50.72 16 8 Si 0.94 43.84 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.09 4.00 4.45 86.31 0.38 4.38 16 13 N -0.68 -24.22 5.75 -489.03 -2.81 -27.03 16 14 C 0.06 1.76 3.15 45.40 0.14 1.90 16 15 H 0.05 1.71 7.18 -2.39 -0.02 1.69 16 16 C -0.12 -3.21 7.35 30.98 0.23 -2.99 16 17 C -0.10 -2.17 4.96 -9.43 -0.05 -2.22 16 18 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 19 C -0.11 -2.04 6.28 31.81 0.20 -1.84 16 20 C -0.12 -1.96 6.83 31.66 0.22 -1.75 16 21 C -0.12 -2.45 6.39 31.32 0.20 -2.25 16 22 C -0.11 -2.62 4.50 -9.60 -0.04 -2.66 16 23 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 24 H 0.05 2.79 6.04 -2.39 -0.01 2.77 16 25 H 0.03 1.53 7.60 -2.39 -0.02 1.52 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.03 1.47 6.79 -2.39 -0.02 1.46 16 29 H 0.05 2.94 6.01 -2.39 -0.01 2.92 16 30 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 31 H 0.00 0.19 8.13 -2.39 -0.02 0.17 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.34 11.89 6.71 -89.70 -0.60 11.29 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.06 1.19 7.30 -2.39 -0.02 1.17 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.05 1.17 7.89 -2.39 -0.02 1.15 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -57.20 308.82 2.83 -54.37 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.38 Total: 19.14 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.04 Total: -41.62 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.61 Total: -77.76 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -57.20 2.83 -54.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462325727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.769 kcal (2) G-P(sol) polarization free energy of solvation -57.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds