Wall clock time and date at job start Sun Mar 29 2020 21:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35045 * 126.39543 * 60.02405 * 4 2 1 6 6 N 1.30496 * 108.69844 * 180.02562 * 5 4 2 7 7 C 1.34120 * 109.25917 * 359.97438 * 6 5 4 8 8 C 1.34670 * 108.01964 * 359.73081 * 7 6 5 9 9 C 1.50699 * 126.59506 * 180.28113 * 8 7 6 10 10 N 1.46900 * 109.47155 * 95.16383 * 9 8 7 11 11 C 1.46906 * 111.00018 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47272 * 325.00907 * 11 10 9 13 13 C 1.53000 * 109.46606 * 85.00639 * 11 10 9 14 14 C 1.50702 * 109.47089 * 205.00035 * 11 10 9 15 15 H 1.08000 * 119.99740 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99591 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99914 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 120.00407 * 0.02562 * 16 14 11 19 19 H 1.48505 * 109.46903 * 89.99844 * 18 16 14 20 20 H 1.48495 * 109.47112 * 209.99763 * 18 16 14 21 21 H 1.48497 * 109.47169 * 329.99979 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08007 * 125.64809 * 359.96939 * 5 4 2 30 30 H 1.08000 * 125.99367 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47662 * 215.17142 * 9 8 7 32 32 H 1.09008 * 109.46826 * 335.16770 * 9 8 7 33 33 H 1.00899 * 110.99850 * 56.05344 * 10 9 8 34 34 H 1.08993 * 109.47495 * 60.00005 * 13 11 10 35 35 H 1.09004 * 109.47233 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.47405 * 299.99516 * 13 11 10 37 37 H 0.97003 * 120.00483 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7735 -0.3435 -2.4780 6 7 2.3744 -1.1945 -3.2639 7 6 3.0183 -2.1057 -2.5197 8 6 2.8134 -1.8046 -1.2231 9 6 3.3522 -2.5527 -0.0311 10 7 4.5955 -1.9169 0.4250 11 6 5.1505 -2.6207 1.5889 12 1 4.3363 -2.9907 2.2120 13 6 6.0043 -3.7980 1.1135 14 6 6.0047 -1.6717 2.3894 15 1 6.1231 -0.6481 2.0661 16 6 6.6350 -2.1104 3.5345 17 7 7.3801 -1.2821 4.2334 18 14 6.4309 -3.8811 4.0932 19 1 7.4957 -4.7182 3.4844 20 1 6.5340 -3.9482 5.5731 21 1 5.1007 -4.3846 3.6664 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.1781 0.4983 -2.7994 30 1 3.6029 -2.9328 -2.8943 31 1 2.6172 -2.5322 0.7735 32 1 3.5545 -3.5864 -0.3120 33 1 4.4479 -0.9401 0.6301 34 1 6.8185 -3.4281 0.4903 35 1 6.4158 -4.3205 1.9771 36 1 5.3865 -4.4845 0.5344 37 1 7.8239 -1.5908 5.0388 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474250626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:42 Heat of formation + Delta-G solvation = 59.516042 kcal Electronic energy + Delta-G solvation = -17149.074809 eV Core-core repulsion = 14541.464501 eV Total energy + Delta-G solvation = -2607.610308 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.94959 -36.32689 -35.96506 -32.81877 -31.14033 -30.26192 -28.29333 -27.50269 -25.37689 -24.11872 -22.92933 -20.87563 -19.97820 -19.23527 -17.13183 -16.54313 -15.49770 -15.29727 -15.03335 -14.22199 -13.85689 -13.79087 -13.45794 -13.31706 -13.06854 -12.74640 -12.48806 -12.24407 -12.11225 -11.88709 -11.58933 -11.37600 -11.09258 -10.95214 -10.71401 -10.16661 -9.75141 -9.55927 -9.38401 -9.10393 -8.67005 -8.11888 -7.58645 -6.16025 -4.16697 2.25390 2.88186 3.22856 3.31437 3.34084 3.41869 4.32722 4.43366 4.72459 4.78535 4.84650 4.94729 5.14647 5.24676 5.29167 5.36254 5.42146 5.51848 5.59260 5.73762 5.77539 5.96104 5.99460 6.12588 6.33236 6.48254 6.64404 6.65424 6.74578 7.00004 7.31958 7.41294 7.49394 7.83358 8.21755 8.30623 8.52845 8.87524 9.45618 10.96779 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.006452 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.808523 B = 4338.565358 C = 4785.638163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 C -0.162 4.162 4 N -0.448 5.448 5 C 0.173 3.827 6 N -0.498 5.498 7 C -0.020 4.020 8 C -0.005 4.005 9 C 0.131 3.869 10 N -0.670 5.670 11 C 0.182 3.818 12 H 0.001 0.999 13 C -0.138 4.138 14 C -0.522 4.522 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.269 1.269 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.196 0.804 30 H 0.166 0.834 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.337 0.663 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 1.524 -7.208 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 C -0.220 4.220 4 N -0.133 5.133 5 C -0.109 4.109 6 N -0.216 5.216 7 C -0.168 4.168 8 C -0.120 4.120 9 C 0.000 4.000 10 N -0.302 5.302 11 C 0.074 3.926 12 H 0.018 0.982 13 C -0.196 4.196 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.225 1.225 21 H -0.194 1.194 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.213 0.787 30 H 0.183 0.817 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.210 1.300 -8.217 15.611 hybrid contribution -0.528 -0.615 1.981 2.140 sum -13.737 0.686 -6.236 15.102 Atomic orbital electron populations 1.22153 0.93410 1.03023 1.03164 1.21468 0.95164 0.94340 0.87056 1.22164 1.02956 0.93862 1.02974 1.45560 1.38000 1.22215 1.07490 1.24601 1.04816 1.02204 0.79280 1.70242 1.12584 1.05193 1.33610 1.21979 1.04426 1.01530 0.88853 1.21365 1.00196 0.92198 0.98233 1.20360 0.91165 0.97550 0.90925 1.60587 1.24735 1.06340 1.38550 1.19563 0.93572 0.92937 0.86575 0.98180 1.22073 1.00417 0.97729 0.99355 1.21066 1.29453 0.98037 1.07435 0.90431 1.24927 0.94484 0.97495 0.96101 1.69888 1.31375 1.35338 1.16865 0.86796 0.79086 0.85456 0.76462 1.20383 1.22514 1.19398 0.91894 0.91760 0.90485 0.88103 0.90461 0.91069 0.91892 0.78750 0.81659 0.95619 0.89340 0.84525 0.92161 0.94456 0.95409 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.24 37.16 0.34 -1.01 16 2 C 0.12 1.35 3.56 -67.93 -0.24 1.11 16 3 C -0.16 -1.60 9.24 37.16 0.34 -1.26 16 4 N -0.45 -6.06 2.62 -106.92 -0.28 -6.34 16 5 C 0.17 2.33 11.55 -90.38 -1.04 1.29 16 6 N -0.50 -8.15 11.25 -14.67 -0.16 -8.31 16 7 C -0.02 -0.32 11.79 -17.82 -0.21 -0.53 16 8 C -0.01 -0.08 6.46 -81.60 -0.53 -0.61 16 9 C 0.13 2.18 5.51 -4.98 -0.03 2.15 16 10 N -0.67 -13.45 6.29 -109.21 -0.69 -14.14 16 11 C 0.18 4.21 2.19 -68.86 -0.15 4.05 16 12 H 0.00 0.02 6.86 -51.93 -0.36 -0.34 16 13 C -0.14 -3.03 8.89 37.16 0.33 -2.70 16 14 C -0.52 -14.30 9.17 -34.44 -0.32 -14.61 16 15 H 0.08 2.30 7.86 -52.49 -0.41 1.89 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 18 Si 0.89 21.66 24.37 -169.99 -4.14 17.51 16 19 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 20 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 1.24 6.94 -51.93 -0.36 0.88 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 29 H 0.20 1.91 8.06 -52.48 -0.42 1.48 16 30 H 0.17 2.48 8.06 -52.49 -0.42 2.05 16 31 H 0.03 0.42 7.35 -51.93 -0.38 0.04 16 32 H 0.09 1.43 7.44 -51.92 -0.39 1.05 16 33 H 0.34 6.84 8.21 -39.29 -0.32 6.52 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 36 H 0.03 0.52 7.45 -51.93 -0.39 0.14 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -31.08 298.48 -7.34 -38.43 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.74 Total: 4.64 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.60 Total: -10.17 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.36 Total: -54.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.08 -7.34 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474250626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.943 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds