Wall clock time and date at job start Sun Mar 29 2020 21:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35045 * 126.39543 * 60.02405 * 4 2 1 6 6 N 1.30496 * 108.69844 * 180.02562 * 5 4 2 7 7 C 1.34120 * 109.25917 * 359.97438 * 6 5 4 8 8 C 1.34670 * 108.01964 * 359.73081 * 7 6 5 9 9 C 1.50699 * 126.59506 * 180.28113 * 8 7 6 10 10 N 1.46900 * 109.47155 * 95.16383 * 9 8 7 11 11 C 1.46906 * 111.00018 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47272 * 325.00907 * 11 10 9 13 13 C 1.53000 * 109.46606 * 85.00639 * 11 10 9 14 14 C 1.50702 * 109.47089 * 205.00035 * 11 10 9 15 15 H 1.08000 * 119.99740 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99591 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99914 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 120.00407 * 0.02562 * 16 14 11 19 19 H 1.48505 * 109.46903 * 89.99844 * 18 16 14 20 20 H 1.48495 * 109.47112 * 209.99763 * 18 16 14 21 21 H 1.48497 * 109.47169 * 329.99979 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08007 * 125.64809 * 359.96939 * 5 4 2 30 30 H 1.08000 * 125.99367 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47662 * 215.17142 * 9 8 7 32 32 H 1.09008 * 109.46826 * 335.16770 * 9 8 7 33 33 H 1.00899 * 110.99850 * 56.05344 * 10 9 8 34 34 H 1.08993 * 109.47495 * 60.00005 * 13 11 10 35 35 H 1.09004 * 109.47233 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.47405 * 299.99516 * 13 11 10 37 37 H 0.97003 * 120.00483 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7735 -0.3435 -2.4780 6 7 2.3744 -1.1945 -3.2639 7 6 3.0183 -2.1057 -2.5197 8 6 2.8134 -1.8046 -1.2231 9 6 3.3522 -2.5527 -0.0311 10 7 4.5955 -1.9169 0.4250 11 6 5.1505 -2.6207 1.5889 12 1 4.3363 -2.9907 2.2120 13 6 6.0043 -3.7980 1.1135 14 6 6.0047 -1.6717 2.3894 15 1 6.1231 -0.6481 2.0661 16 6 6.6350 -2.1104 3.5345 17 7 7.3801 -1.2821 4.2334 18 14 6.4309 -3.8811 4.0932 19 1 7.4957 -4.7182 3.4844 20 1 6.5340 -3.9482 5.5731 21 1 5.1007 -4.3846 3.6664 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.1781 0.4983 -2.7994 30 1 3.6029 -2.9328 -2.8943 31 1 2.6172 -2.5322 0.7735 32 1 3.5545 -3.5864 -0.3120 33 1 4.4479 -0.9401 0.6301 34 1 6.8185 -3.4281 0.4903 35 1 6.4158 -4.3205 1.9771 36 1 5.3865 -4.4845 0.5344 37 1 7.8239 -1.5908 5.0388 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474250626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:41 Heat of formation + Delta-G solvation = 38.860169 kcal Electronic energy + Delta-G solvation = -17149.970515 eV Core-core repulsion = 14541.464501 eV Total energy + Delta-G solvation = -2608.506014 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.06417 -37.99745 -36.91181 -34.73754 -32.71041 -31.43846 -29.72721 -28.23084 -27.27290 -25.64568 -23.90976 -22.00376 -21.81468 -20.35977 -18.90095 -17.86334 -17.23049 -16.44758 -16.14356 -15.60300 -15.40066 -15.10772 -15.00401 -14.44449 -14.38039 -13.97469 -13.95665 -13.55011 -13.15052 -13.00278 -12.83765 -12.74274 -12.58825 -12.40959 -12.12188 -12.05774 -11.46039 -11.14303 -10.88802 -10.77806 -10.47881 -9.38456 -9.13668 -8.33296 -6.38705 1.11211 1.31611 1.34639 1.45633 1.87344 2.24387 2.29427 3.02096 3.48991 3.60094 3.79795 3.89722 3.94546 4.04232 4.13666 4.45804 4.50292 4.62117 4.63974 4.67947 4.72092 4.78187 4.83328 4.86793 4.97955 5.00080 5.11703 5.21153 5.45208 5.50444 5.60839 5.81843 5.93606 6.37255 6.42663 6.57923 6.74464 7.16837 7.28015 8.83026 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.006452 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.808523 B = 4338.565358 C = 4785.638163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.118 3.882 3 C -0.158 4.158 4 N -0.446 5.446 5 C 0.185 3.815 6 N -0.531 5.531 7 C -0.033 4.033 8 C -0.021 4.021 9 C 0.137 3.863 10 N -0.675 5.675 11 C 0.187 3.813 12 H 0.002 0.998 13 C -0.136 4.136 14 C -0.526 4.526 15 H 0.037 0.963 16 C 0.016 3.984 17 N -0.945 5.945 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.298 1.298 21 H -0.247 1.247 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.233 0.767 30 H 0.170 0.830 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.331 0.669 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 0.713 -7.747 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.215 4.215 4 N -0.130 5.130 5 C -0.097 4.097 6 N -0.250 5.250 7 C -0.181 4.181 8 C -0.137 4.137 9 C 0.007 3.993 10 N -0.306 5.306 11 C 0.078 3.922 12 H 0.020 0.980 13 C -0.194 4.194 14 C -0.564 4.564 15 H 0.056 0.944 16 C -0.182 4.182 17 N -0.585 5.585 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.171 1.171 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.249 0.751 30 H 0.187 0.813 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.210 0.487 -8.768 17.563 hybrid contribution 0.053 -0.217 2.088 2.100 sum -15.158 0.270 -6.680 16.567 Atomic orbital electron populations 1.22120 0.90921 1.03024 1.04872 1.21668 0.97025 0.94296 0.85407 1.22150 1.01056 0.93539 1.04789 1.45738 1.37278 1.21555 1.08382 1.25323 1.03495 1.02014 0.78852 1.70239 1.13964 1.06208 1.34594 1.22189 1.04698 1.01993 0.89237 1.21191 1.01467 0.93448 0.97579 1.20309 0.89761 0.97777 0.91408 1.60550 1.26994 1.06029 1.36993 1.19402 0.93081 0.92561 0.87131 0.98037 1.22002 1.00346 0.97623 0.99390 1.21346 1.29755 0.97286 1.08025 0.94442 1.25790 0.94149 1.02039 0.96227 1.70034 1.33021 1.37730 1.17704 0.85793 0.80291 0.80070 0.75879 1.19325 1.22537 1.17108 0.92713 0.90178 0.88668 0.89904 0.88757 0.93955 0.90016 0.75059 0.81257 0.94971 0.88499 0.85152 0.93200 0.94926 0.92103 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.24 71.98 0.67 -1.46 16 2 C 0.12 2.40 3.56 44.99 0.16 2.56 16 3 C -0.16 -2.87 9.24 71.98 0.67 -2.20 16 4 N -0.45 -11.35 2.62 -492.17 -1.29 -12.63 16 5 C 0.19 4.59 11.55 180.26 2.08 6.67 16 6 N -0.53 -16.64 11.25 -200.31 -2.25 -18.90 16 7 C -0.03 -1.05 11.79 83.53 0.98 -0.06 16 8 C -0.02 -0.65 6.46 40.95 0.26 -0.39 16 9 C 0.14 4.42 5.51 85.56 0.47 4.89 16 10 N -0.67 -26.87 6.29 -499.44 -3.14 -30.02 16 11 C 0.19 8.51 2.19 44.17 0.10 8.60 16 12 H 0.00 0.10 6.86 -2.39 -0.02 0.08 16 13 C -0.14 -5.70 8.89 71.98 0.64 -5.06 16 14 C -0.53 -29.39 9.17 25.60 0.23 -29.15 16 15 H 0.04 2.33 7.86 -2.91 -0.02 2.31 16 16 C 0.02 0.91 5.45 84.65 0.46 1.37 16 17 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 18 Si 0.95 43.99 24.37 68.60 1.67 45.66 16 19 H -0.27 -11.86 6.87 99.48 0.68 -11.18 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 21 H -0.25 -10.47 6.53 99.48 0.65 -9.83 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.08 0.89 7.95 -2.39 -0.02 0.87 16 24 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.99 6.94 -2.39 -0.02 1.97 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.17 7.95 -2.39 -0.02 1.15 16 29 H 0.23 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.03 1.00 7.35 -2.39 -0.02 0.98 16 32 H 0.10 2.94 7.44 -2.38 -0.02 2.92 16 33 H 0.33 13.74 8.21 -89.69 -0.74 13.00 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.03 1.39 3.27 -2.39 -0.01 1.38 16 36 H 0.06 2.13 7.45 -2.39 -0.02 2.11 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.80 298.48 2.25 -65.55 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.23 Total: 22.37 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 6.73 Total: -14.23 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -6.38 Total: -119.35 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -67.80 2.25 -65.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474250626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.409 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds